AMCG00012225


Basic Information

Item Value
gene id AMCG00012225
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13281096 ~ 13291869 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012225
ATGGGTAGAGTCAGCCTGGCCGCTTTTAGGCGTTGTTCTCAGGATTTCCACGGGTGTGAGGTGATGgtgGGCATCTGTGTGACTCGTGCAACCAAGTTGAGGAGAGTGGCCCCTCCCTCCCCTGGGCCCCACCGCAGAGTCCAGCCTGTTAGCAAACACACAaaaaatgCTAGAAGGACGGCAGCTTGCGATGCTCCCAGACACAAACCAGCAGCCGTCACGCACCAATCAGAGGAGAGTCAGAGACTGGGGGTGGGGCTTGAGCATTCTGACCTGGGGAGTGACCAATCAGAAATTAAACCGGAGCGGCAACCTGAGGGCCAATCAGATCTTAGTCCAGCCGTGATTGGAGGCTGCGACCCCGAGAGCCCGCCCCCGGCTGCCCTGAGGCGCTGGGTGATTGGCCCACTCTTCCAGTCCCTCAAGTCGAAAGTGGCCAGCTTCACGGAGATCGTCATGTCGCCCGTGCGCATGTTCAAGCCCATCGAAGGGGCGGCCAGGGGGGTGGTCCCAGAGGAACAGCCCTCCGACTCTCCGACCCCTGCCGATGGCGTGCCAGAACCCAACGCGCCCCCACACCAGGGACAGGGCAGGGTGGGCGTGGAGGGTGCTGAGACCGCCCAGGGTCACAGACGCACAGCGGGGGACACCCCAGGCTCCAGGGTCAGAATCCGTCTCCAGCTTGACCCTCTTCCGGTCACCTCCCAGggcctctccccctcctccttggACTCGGGCACAGGAGAGGAGCACGGGCCTCCCTTGACCAGAATCCTGGGCTCCAGGGGTAGTGCTGCGGCTGTGGAGGAGCAGTCACCCCTGGCCACGCCCATCCCAGAGCTGGGCCTCCTTCTCCCAGACTTTAGGGAGGCGATGCAGTCCCTTGCCAGCCCCCTTCGCACCACCTCTGTCCTGGACCACCCCTCCGAAACCCAGCCCCAGTGGTCCAGTCTGTCCTGGTGGAAACACCCGTCCATGTCCCCCCAAAAGGACTCCACAGCCCCTTGCCCGTCCATCCTGGAGAAGAGGGCTGATGCCTCCGCCAGCTCGCAGACCCCCACTGCACTTTCGCCGCTGGCTTTTAAGACGCCTCCAGAGACTCACTGCCCGGGTCAGACTGGGCATGCTGGGACAGCTGGTGAGGAGGGGCGGACTCTGCCCTCTCCAGGACCTTGGGCTTGTGCTGAGGACCACTACACCACCCCGGCCAGCTCTCCTGCACAGTGCAGCGGGGCTGGCGTCCTGACCAGCTGTGGCCCAGAGAAGCAGGAGACGCCCCTTGGCCCACCCTGGTCTGCTGCTGTGGCCGCTGCTTGGTCCGGGTCGATCCCTTTCCCAGATGCAGACAGGCCTTTGCGGTCCCCAGAGGCCTGTGCCCCCATGTCTCTGGACCATGTCTCTGAAGAACTGCCAGGGGAGGTGGGGAAGGGACGAGAGCAAAGAGGAATCACCTCCTGGGACTTGCCAGATGCTGCTTTGAGAAGCCAGGAGCTGGGAGAGATGCTGGGTGTGGAGTTGCAGCCCGACACGGATTCACCCCCTCTCTCCAAGAGGACAACTGTCAAAGGTGTTGATGTGGTGGGAGAGGAGGTCAGGGGATCTGTACATCAGAGAAGTTCCCCAGGACCGGCTAGACTGTGCcagaaaaaggaagagaaggAAAGCCCTCTATCAGTTACGGCCCAGTCACAAAGCAGCAGTATTAATAGCAGCAGCGCCAGTGCTGGAATAGAGGCCAGGCCAGTGGTGTCGCCAAGATCATGCCCTAGGCCTCGACGAGAGCGGTGTTTGTACACGGAGACGCCCACTTCCGGCAGGCTTAGCAGGAGGCTGTCGGAGCCAGGGCCCAGACTGACAAGGTCGTCAGTGGGCAACAGGCGAGGGAGCAGCCCACTTCAGCCGTGGAGGGACCCCCATTGGTTGCTGAAGCCAGCCTTCGTCAGAATGGGCTCCAGGAAGGTCATGGCAGGCCTGGGGACAATCCCGAGACGGAGGGAGCGCAGCAGGTCGCACTCCCGATCGCACTCCCGATCGCCCCCACAGGCGAGGCACCCACCCCCACCTGCGGGGTCCCCAGCCAGGGccagggcagcaggggtggagGTTGTAGGAGCAGGGAGATGTTCCACAGAGCCCCCAGTGACTGCAAGGTCTATGCGATTCGGGAGGCGTCTGGCCAGAGCTGAATCAAATTGGAGCCCAGAATCAAGTTCAAGCTCCTATTCTGCTTCCAGTTCCACGGTATCCAGTTTTCAAACCGTTCCATGCAGCCACCCTTCCCCCCAGCCATCGCAGGACGGAAATGGACGCTCTCCTGCTGGGGAGGATGGAGGCGCCGCGACACTGGGTCCTGCTGCCGCCTCACTGGAAGATTCTGGCAGTTCTCCCAGTCCTGGGTCAACTGTGCTTGGGTTACCCATAAGCCAGCCTGGATCACCTGAGTTCTCTGTGTCTGCCGGTGAGGACTTTGGTTCTTCGTCCTTGCTCTCGTGCACACCTCCTTCAGAAACCAACACCTCCTCCACCTCTTCCTCTGTTGTTGGCTCTGCCTTAATGGATTGTAGCACAGAGGCCAAGCCCCACCACACCCTGACCCCACCCACAGAGGACGCAGACTTGGTTCACCCTTTGGAGAGCTTGAAACTGGGGCAGGCCGTCCCTCCTGCTGCCAGGGCTGCCCTGATTAGAAATGGCGACCCCAAAGTGATCCCTGTCCGCCACAGGAAGAGGAAGCGTCCCACAGACGGCCCCACTCCAGACCCCAGTGTCTCCCCAGAATGTCCAGTGCCGCAGATGGCAACCGGGAAGGCATCTGGAGAACAGCTCCCTTCTGAGGAGAGCAGGGGAGCTGTAGGGGTGTCTGGGAAACCTCTGGAAGACTGGATGGCTGTCTGTCCcacagcagagagacagacgaAGAGGAGGGCTTTGAAGGGCAAGGGGCCCAGAGAACACAGGCACCCAAATGCCGATGGAGATGGGACATGCAGATGTTTGTCTTCGGCTTCTATTGGGACTGGCCCTGAGTACGAGAGCCGTTTGCTCCgagtggacagacagacagcacctCAGAGGCTTTGTCCATCTGAGGTGTGTCAAACAGGGGCCCTATCCAATGTGGGCAAGGGGAAGCGCAGCCCCAAATCCCCCTGTGGGCAATCCGGCAGCTTCCCTAGTCTGTATGTGTCACTGAAGCGGTTTGATCGCAGGCGGGTGTCCCCAGCGCAAATGGGCATTGCTAGTGCCAGGGCGGAGAGGCTGCGCCAGAGAAGCCTGGGGAAAGCGCTGGGAGAAGAGTCTTGGCAAAGCAGTCGTCTCCAGAGTACAGGCTCTTCTGCTCACCCCACTGCTTCAGGCTGTGCCCCCATGGCTGCCCAACCCCAGCTCTCCCACCTCCCCAGCCAGTCAGACTTCACCCACATCACCATGCGCCGGGTCTCCAGCAGGGCCAGGAAGGAGACGCCTGCTCCCACGCACCCCGCCCTCTCGAACCCAGACAGCTTGACTTACAACAGGACGGCCGGACTCCCACTCTCCCCGCTCCGTGCTTCCCCGCGTGTTGCCCATCAGCCAAAGGGAGTAGCAGCACCTTCGGCCGCCAAGGATGAAGAGAAACCGGTCGTGGGAAGGGTGAGCCAAGCCGAGCCCCTGCTGCCCATGAGGTCCATGAGGAGGGCAGTTGTAAGGATGGGGTCCCGCTGCACTGAGCTGCGCCGGAGCCCTGGGGGAGAGAAGGGGGATGGAAAGAAGTCGCCTATTGGCTCCGGGGAGACTGGGGGCGTTCAGTCCTTACGCAGGCCCAGAGGGAGGCCGAAAGGGAGCAGGAAGAGTGGGCCGAGGGAGAGGAGGCGAGAGGGAGACGAGGGGGAAGCCGACATGAAGGCCCAGAGGCCACAGAGGCCACAGAGGCCACAGAGGAAGAACTGGAGATGCAAACGAGGAGGTGAGGAGGGAGATCCCCTGAAAAACAGGACCCCTCCCCCCAGAGAAGAGCGCAGGCCCCCAGCTGTCCACAGCCAAGGTAGCACCCCCCCGAGACTCTTGCGAAGCTACTCCTGCCCTGAGATCCCTTCTTCACTCCCTGACCGCCCCTGGCCCGGCTCCCTGCCAGCCCCATTTACCCTGGTCAGACCCCCCTCTTCCCTGCCCTGCCGCCACTATAGCCCCCCCTCTGTCAAGCGCCTCCGCCGCCACACTGTATGCAGTGTGGAAATTGAGAGGGAGATTGCCCCCTTGTGTCTGCGCAAGGAAGTGTACCCCGGCTGTAATAGTGGGAGAACCAGTCTTTACGGCACCCCCTCCCGTCATCTCGCCTCCTcagcctcctcctcttcctcctccaccaccacctcctcatcctcctcctcctcctcctcttcgtcCTCTCTCTCCGCCCTGGCTTCCAGTTTCCTGTCCAGCCCCTTGGCATTCCTGTCCCGGCGCCACAGCAACCAGGAGGGCAGCAGTAGCTCCAAATCCGGTGGCGATCTGGTTTCCTGTTCCTCTGCCAGTGCCGCCGtcacctcttcctcctcctcctccgccacGTCCCTGCACTTCTTGTTCCCTGGATCCTCTTCCTGTGtcctgcccgattccagccaaTCACTGGCCTCCACCTCCTCCTTCTGCAGTGCCCCATCTCAGGGTTCTGGGGATTCGTGCAGGGGCGAGAGGTCGGGGGTCGTGACCCTGCAGGAAGAGGAAGCTGGTGATTTCTCCCTGGAGCTGGAAGTGCGGGAGACCAGAGATGAGAGGTCTCTGTCGGACTCAGAGATGAAGATGAACTGTCCCAAGCAGGGAGTGACAGGGAAGGTGTCCAGGATCCGAATCCGTAAAACTGCCCCAAAACCCCCCACCAACCTCACGCCAATGGGACTGCCCAGACCTGTCAGgcTGAATAAGAAGGAGTTCAGTCTGGAGGAGATCTACACCAACCAGAACTTCCGCAAACCACCAGAAGGGCGCCTGGAGACGATCTTTGAGGTGCCAGTCAGTGGACGGGACGGCTCCCTGTCTCTGATTGGCCAGCGCCGTCTCAAGCGATTGGTGGACTTCCCGGAGGCAGGCGTGGCCCGCAAGCCCAGGAAATTCCTCGGGGGCGGGCCCTCCAGGAAGGCCGGGGGCGGCGGCTTGGCCCGGACTCGGCGaggagggggtggtggtggcAAGGGCCCGTCCCCCCTCTCCCTGGAGGAGCTGGATGCGCTGCTCTGCGCCAAGCTGGATGAGCTGGAGGCCTGGATCGCCCTGGACCAGGGGGAGGGGCCTTCTTAAGAACCAGTGGGACTGCGTGAGAAGAGGGGTGCGGAGAGGCCCAGCCAATCCCATCGCCTGTCGTCCAGTCCATTGCGCTTTGGCAGCCAATCGGAAGCCTTGTACTGCACTCGGTGGGGTGTAAAAGCACAAGAGGGTGAAGAGTGATTCTCTTCTGAACAACCTGCCGTGTCCAACTCTCCCTCCCCTGTAGACTGGAAAGGGAGAGCTGTCAGTACTGTTTCCCTTGCAGTCTTCACTGTAATGTCACACAAAGGCACATATGAAATCATGTCACTGTctaaaatcaaaactaaaacaaaatgaccTTTCACTTTAAGAGCACTTACTGTTTTGGGGGAGGGGTGCGGGGGGGAGAGAGCCCAAGTTTGAATGTTTACAGCGAGGTCTGGCTTCAATCCGAAAGTCCACTGTAACTGTCGCAGCCTCTTCGGTACCGGGACGGAATTCGTATCGCCATATACGtctgttcttttcctttttattgtcCTATCAAACAGGGCTCAAAGTGTGCTTGAAGTTGGCCCCACTCGGGGCAGAGGTAAACAGGGTGGTAGATTCCCAGCCCCAGCAATCTCCTCTTCCCTGAGCCCCTGTTCTTTcacttgtatttcatttttgttctgtatatatacatatatatatatatatagttttttttttttttcttttatacgAGCACATATGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012225 True 5966 mRNA 0.60 9 13281096 13291869

Neighbor

gene id symbol gene type direction distance location
AMCG00012220 NA coding downstream 14249 13259410 ~ 13266847 (-)
AMCG00012219 NA coding downstream 58540 13208091 ~ 13222556 (-)
AMCG00012221 NA coding downstream 118833 13155697 ~ 13162263 (-)
AMCG00012214 NA coding downstream 137616 13135743 ~ 13143480 (-)
AMCG00012216 NA coding downstream 179722 13087973 ~ 13101374 (-)
AMCG00012232 NA coding upstream 173603 13465472 ~ 13486579 (-)
AMCG00012230 NA coding upstream 204618 13496487 ~ 13506591 (-)
AMCG00012234 NA coding upstream 218346 13510215 ~ 13518859 (-)
AMCG00012235 LOC102795145,LOC101068670 coding upstream 244326 13536195 ~ 13539367 (-)
AMCG00012237 NA coding upstream 255215 13547084 ~ 13552454 (-)
G135193 NA non-coding downstream 1802 13270812 ~ 13279294 (-)
G135184 NA non-coding downstream 66554 13150515 ~ 13214542 (-)
G135161 NA non-coding downstream 328971 12863860 ~ 12952125 (-)
G135160 NA non-coding downstream 440783 12792948 ~ 12840313 (-)
G135151 NA non-coding downstream 649037 12578865 ~ 12632059 (-)
G135202 NA non-coding upstream 29862 13321731 ~ 13329044 (-)
G135217 NA non-coding upstream 125536 13417405 ~ 13418804 (-)
G135333 NA non-coding upstream 460041 13751910 ~ 13818084 (-)
G135405 NA non-coding upstream 562689 13854558 ~ 13856288 (-)
G135416 NA non-coding upstream 591933 13883802 ~ 13884899 (-)
AMCG00012222 NA other downstream 48707 13231622 ~ 13232389 (-)
G135172 NA other downstream 179616 13082221 ~ 13101480 (-)
G135164 NA other downstream 369209 12895168 ~ 12911887 (-)
AMCG00012197 znf646,LOC107563786,LOC107727719,LOC107665149,LOC107549872,LOC102077593 other downstream 479028 12764572 ~ 12802068 (-)
G135152 NA other downstream 577611 12702450 ~ 12703485 (-)
AMCG00012226 cd2bp2 other upstream 4550 13296419 ~ 13300421 (-)
AMCG00012233 NA other upstream 227797 13519666 ~ 13524815 (-)
AMCG00012238 NA other upstream 318617 13610486 ~ 13667607 (-)
G135318 LOC100846954 other upstream 412977 13704846 ~ 13705612 (-)
AMCG00012261 NA other upstream 798199 14090068 ~ 14094688 (-)

Expression


Co-expression Network