AMCG00012226 (cd2bp2)


Basic Information

Item Value
gene id AMCG00012226
gene name cd2bp2
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13296419 ~ 13300421 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012226
CGCCCCAGCTCCGGCTCTCTTTCTTTACGTCACTTCCTCAACTTGGCTTGTGTGTATATGGCGCCAGAGTAGAGCACGTCGCAAACTCTACCAAAGATGTCAAAGAGGAAGGTGACATttgaggagggggtgggggagtatGATCTGGCTGATCTGGAGGAGGAGATCCCCAAGAAAAAGCTGTGTGAGAGTGCGGGGGTCAGTGGTCCGGGCTCCAGGTTCAAAGGGAAGCACTCTCTGGACAGCGACGAAGAGGATGAGGGGGACGAGGGAGACGCACAGAAGTACGACATGCTGGCCAGCGACGACGTGGAAGGTCAGGAGTCTGCCACGATTGACTTTGACGAGGGGGTGCGCATCACGCCCTTCAACCTGGATGAGGAAATGCAGGAAGGCCACTTTGACTCTGAGGGCAACTACTTCTTGAAAAAAGAGGAACAGATCAGAGACAACTGGCTTGACAACATTGACTGGgtgaAGATCAGAGAGCGCCCcgtgaaaaaaaagaaaggactGTCGGCCAAGCGCACAAGGAGAGCAGGGGATGAGGACGAGgcggaggaggagaagaagagagaggagagagacgggcagcagcaggaggaggagatggaggagggagggagcgacGGAGAGGATGAAGGGGGTGGAGGGGCCGGGACAGACCCCCTGGCTTCCATGGATCGCAAACAGCTGACGGAGGCCGTGATCGAGATGCTTTTGCCAGGGGAGACGGTCGCCAAGGCCCTGCGGAGGCTGGGGGGGCTGGGCAAGGGCAGGGGGCAAGGGCGAGGCagagggagggggcaggagGCGGGTGGGGGGGATGCAGTGGGGCAGACGGACAGGGACACGGAGAAACTGGACAGACTGACCGCCCTGGCTGACCGACTGGTGGCGTCTGGGGAGTTTGAGATCTACCAGAAGACCTATGAAACCCTGGCCTACAGGTTAAAGGCCAAAGCCTCCAAGGTCCCCAAGAAAAAGAAGatgggaggagagggggaggaagaggaggaggaggatgaactGGATATGTTCGCTGAGGAGATCGACGGGAAGGAGCTTGCGAGGAAAAGACAggaggagagtgagggagaggacGAGGAGGCAGAAGACAGTGGCATAGCGAGTGAGGAGGTCATGTGGGAGTATAAGTGGGAGAGTGGAGAGCAGTCAGAGCTGTATGGGCCCTTCACCAGTCAACAGATGCAGGTGGGCCCCTCACCACAGAGTCTCAGTGCTCAAGGACGACAAGGGCCGGGGAGCCAGCCGAGCATTGCTAAAGTCACTGCAGTCGGCACATCAGTTAGAGTCCGAGCCAGGGCCAGTTAA
>TU169801
GCTGTGTGAGAGTGCGGGGGTCAGTGGTCCGGGCTCCAGGTTCAAAGGGAAGCACTCTCTGGACAGCGACGAAGAGGATGAGGGGGACGAGGGAGACGCACAGAAGTACGACATGCTGGCCAGCGACGACGTGGAAGGTCAGGAGTCTGCCACGATTGACTTTGACGAGGGGGTGCGCATCACGCCCTTCAACCTGGATGAGGAAATGCAGGAAGGCCACTTTGACTCTGAGGGCAACTACTTCTTGAAAAAAGAGGAACAGATCAGAGACAACTGGCTTGACAACATTGACTGGgtgaAGATCAGAGAGCGCCCcgtgaaaaaaaagaaaggactGTCGGCCAAGCGCACAAGGAGAGCAGGGGATGAGGACGAGgcggaggaggagaagaagagagaggagagagacgggcagcagca

Function

symbol description
cd2bp2 Predicted to be part of U5 snRNP. Orthologous to human CD2BP2 (CD2 cytoplasmic tail binding protein 2).

GO: NA

KEGG:

id description
K13099 CD2BP2, PPP1R59; CD2 antigen cytoplasmic tail-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012226 True 1335 mRNA 0.58 6 13296419 13300421
TU169801 False 420 TUCP 0.56 3 13298444 13299436

Neighbor

gene id symbol gene type direction distance location
AMCG00012225 NA coding downstream 4550 13281096 ~ 13291869 (-)
AMCG00012220 NA coding downstream 29572 13259410 ~ 13266847 (-)
AMCG00012219 NA coding downstream 73863 13208091 ~ 13222556 (-)
AMCG00012221 NA coding downstream 134156 13155697 ~ 13162263 (-)
AMCG00012214 NA coding downstream 152939 13135743 ~ 13143480 (-)
AMCG00012232 NA coding upstream 165051 13465472 ~ 13486579 (-)
AMCG00012230 NA coding upstream 196066 13496487 ~ 13506591 (-)
AMCG00012234 NA coding upstream 209794 13510215 ~ 13518859 (-)
AMCG00012235 LOC102795145,LOC101068670 coding upstream 235774 13536195 ~ 13539367 (-)
AMCG00012237 NA coding upstream 246663 13547084 ~ 13552454 (-)
G135193 NA non-coding downstream 17125 13270812 ~ 13279294 (-)
G135184 NA non-coding downstream 81877 13150515 ~ 13214542 (-)
G135161 NA non-coding downstream 344294 12863860 ~ 12952125 (-)
G135160 NA non-coding downstream 456106 12792948 ~ 12840313 (-)
G135151 NA non-coding downstream 664360 12578865 ~ 12632059 (-)
G135202 NA non-coding upstream 21310 13321731 ~ 13329044 (-)
G135217 NA non-coding upstream 116984 13417405 ~ 13418804 (-)
G135333 NA non-coding upstream 451489 13751910 ~ 13818084 (-)
G135405 NA non-coding upstream 554137 13854558 ~ 13856288 (-)
G135416 NA non-coding upstream 583381 13883802 ~ 13884899 (-)
AMCG00012222 NA other downstream 64030 13231622 ~ 13232389 (-)
G135172 NA other downstream 194939 13082221 ~ 13101480 (-)
G135164 NA other downstream 384532 12895168 ~ 12911887 (-)
AMCG00012197 znf646,LOC107563786,LOC107727719,LOC107665149,LOC107549872,LOC102077593 other downstream 494351 12764572 ~ 12802068 (-)
G135152 NA other downstream 592934 12702450 ~ 12703485 (-)
AMCG00012233 NA other upstream 219245 13519666 ~ 13524815 (-)
AMCG00012238 NA other upstream 310065 13610486 ~ 13667607 (-)
G135318 LOC100846954 other upstream 404425 13704846 ~ 13705612 (-)
AMCG00012261 NA other upstream 789647 14090068 ~ 14094688 (-)
G135814 NA other upstream 1219409 14519830 ~ 14523063 (-)

Expression


Co-expression Network