AMCG00012227


Basic Information

Item Value
gene id AMCG00012227
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13525684 ~ 13527970 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012227
atgttgggggtgtttttctcttctccccCCGGATATCCTGTTGATGTTGTTATATTCAGCGCTGGCGCAGTCCATCGGTGGCCGTTCGGTCTCAACGACACAGTTGCTAAAATCCACGGGAATCGCTCGGCGCCGAAGGGGAGTGTTAACGGGGACGGCCGGGCGATGGAGGCGGGGAGCAGCGGGGAGACACCGGCGAAGCAGGAGGCGGAGAGGACGACGGTAGAGGACGTCAGGGTGGACTCCAAGAAGTCCAAAGGCGaTTTCCTCTGGACGTCCGAGGCTACCTGGACACTGGTGCGGGTCCGGCTGGCGCTGGACAGCTCGTTCCGGCAGCCCGTGTGCAGGAAGGCGCGGCTGTGGGAGCGGGTGGCCGAGGCGGTGCGGGCGGGGGGGCACCGCGAGGTCAAGGGCCACGAGTGCGACTGCAAGTGGCGCAACCTGCTGGCCACCTACCGCAAGAACCGGGAGAGAGCGCGGCGTCTGGGCGGCCAGGCCGTGCACTGGGAGTTCTTCACCGCCATGGACGCTGTGCTGGGCAGAGGGGGCGACGATGGGGGTGCGGGAGAGGGGGCcaccgccgccgccgccaccCACCCCAGCCCTGGAAGCCCCAAGAAGAAATCCCCTCACTCAGCCACTGCCACGGCCCCTGCGGTCGCCACCGCTGCCGCCCGCCCCCAGCCCGGCTCGTCCCCAGGGCCGAGGGTGGGCGTTGCCGCCAGTGAGGTGGGCCCCCAAGGGACAAAGGTCAAGAGGAGGAGCCCACCCTGCTCCTCCTCCCCGTCCCCCTCCCCAGACGGGCTGCAGCTATACCTGGAGCTGCAGGAGAGGCGGCTGGCGCAGTGGGAGGAGCAGCGGGACCTGGAGGAGAGGAAGATCCAAGCCATCAACAACCTGGCCCAGGCCATCGCCAGCCTCGCCCAGAAGGACTGACTTGACCAGCTGATTGGCTGGAGGATTCTTTTTTAGGTTAAAACAGGCAAGGCTGTTTTACGGGAGTGCCACGCCCACCATGGATGCCACTTCCTCTTCTTGTTGGATGGTGTGGGCATGCTGGATAGCGTAGTACAATCACAGCTCCTGTCGGTCAGGGAAGCAGGATAGACGGCACAGTGATGCACGGatagtacagcacagacagagTACAGGACAATCCAGGCGGTACAGACAGCAGCCACTCACGGacaacagacgcacacagacaggaGACACAGAGTACAggacaatacagtacagcacagacaggCACGTGGTGTGCTGACCCCTATTTCAGAATGAATAACTGTTCCCTGcctttgttacattttttttttattaacataaaattaaaaaccaaaaagcCAAA

Function

GO: NA

KEGG:

id description
ko00860 Porphyrin and chlorophyll metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012227 True 1348 mRNA 0.62 3 13525684 13527970

Neighbor

gene id symbol gene type direction distance location
AMCG00012224 mylpf,LOC108249004,LOC108443170 coding upstream 202295 13317915 ~ 13323389 (+)
AMCG00012223 NA coding upstream 218161 13303056 ~ 13307523 (+)
AMCG00012218 NA coding upstream 323292 13187382 ~ 13202392 (+)
AMCG00012212 NA coding upstream 342854 13166600 ~ 13182830 (+)
AMCG00012213 NA coding upstream 377110 13144427 ~ 13148574 (+)
AMCG00012236 NA coding downstream 13183 13541153 ~ 13543947 (+)
AMCG00012229 pelo,LOC107674509 coding downstream 22084 13550054 ~ 13556902 (+)
AMCG00012242 NA coding downstream 168120 13696090 ~ 13700551 (+)
AMCG00012241 NA coding downstream 213269 13741239 ~ 13743991 (+)
AMCG00012243 NA coding downstream 259410 13787380 ~ 13788233 (+)
G135226 NA non-coding upstream 41206 13477562 ~ 13484478 (+)
G135138 NA non-coding upstream 97685 13427351 ~ 13427999 (+)
G135137 NA non-coding upstream 104633 13417405 ~ 13421051 (+)
G135131 NA non-coding upstream 128048 13372603 ~ 13397636 (+)
G135117 NA non-coding upstream 227484 13287666 ~ 13298200 (+)
G135250 NA non-coding downstream 2802 13530772 ~ 13531293 (+)
G135255 NA non-coding downstream 4728 13532698 ~ 13625360 (+)
G135257 NA non-coding downstream 9276 13537246 ~ 13541117 (+)
G135280 NA non-coding downstream 137664 13665634 ~ 13665881 (+)
G135282 NA non-coding downstream 144144 13672114 ~ 13673799 (+)
G135240 NA other upstream 5190 13519421 ~ 13520494 (+)
AMCG00012228 NA other upstream 16885 13471101 ~ 13508799 (+)
G135058 NA other upstream 100325 13422435 ~ 13425359 (+)
AMCG00012217 NA other upstream 248713 13269196 ~ 13276971 (+)
G135070 NA other upstream 551631 12968377 ~ 12974053 (+)
G135264 NA other downstream 56300 13584270 ~ 13585916 (+)
AMCG00012245 NA other downstream 279243 13807213 ~ 13817545 (+)
AMCG00012247 NA other downstream 322408 13850378 ~ 13855055 (+)
AMCG00012253 NA other downstream 534267 14062237 ~ 14095797 (+)
AMCG00012262 LOC104967735 other downstream 645943 14173913 ~ 14183167 (+)

Expression


Co-expression Network