AMCG00012229 (pelo,LOC107674509)


Basic Information

Item Value
gene id AMCG00012229
gene name pelo,LOC107674509
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13550054 ~ 13556902 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012229
CCATCCGACGTCATCAGACCGCGACGTGATTCGTGGGGTTGTTGTGGACTTTTTATTAATTCTCGGCGAGAAGACGTCTATGGGTTCGCTGACTATGACTTTCTTGTGTATCTATACGTCTTGTCGGATGTAAAGCAACAATATTCTCATATTACTAGTTCTAAAAATCGGTGGGAAATGAAGTTATTACATAAAGACATCGAGAAAGATAATGCCGGTGGAAACCATCGACTTCGACACCCAGGCCTGCCAACTGAGGGTCAAGGGAACCAACATCCAGGAGAATGAGTATGTCaagatgggGGCGTACCACACTATAGAGCTGGAGCTCAACAGGAAGTTTACTCTGGCAAAGAAGGTGTGGGACAGTGTGGTGCTGGACAGGATCGagCAGGCGTGTGATGCGGCCCAGAAGGCCGATGTGGCTGCGGTGGTGATGCAAGAGGGACTGGCCAACATCGTGCTGGTGACCCCTGCCATGACGCTGCTGAGGGCAAAGGTCGAGGCCGTCCGCAGCGACAACAAACTGCTGCTGGAGAACCGGCCCAAGTTCATGCAGGTCCACTCCTCCTCCGGACACAAGTACTCCCTGAAGGAAATCCTCTCTGACCCCACCGTCACAAGCAGACTGTCTGAGACCAAGAACTCTGTACCCACAATCCTTTGCTCTGTGCCCCATTGA

Function

symbol description
pelo Predicted to enable endonuclease activity and metal ion binding activity. Predicted to be involved in nonfunctional rRNA decay; nuclear-transcribed mRNA catabolic process, no-go decay; and ribosome disassembly. Predicted to act upstream of or within RNA surveillance; cell division; and nuclear-transcribed mRNA catabolic process, non-stop decay. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Orthologous to human PELO (pelota mRNA surveillance and ribosome rescue factor).

NR:

description
PREDICTED: protein pelota homolog

GO: NA

KEGG:

id description
K06965 PELO, DOM34, pelA; protein pelota

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012229 True 682 mRNA 0.52 7 13550054 13556902

Neighbor

gene id symbol gene type direction distance location
AMCG00012236 NA coding upstream 6107 13541153 ~ 13543947 (+)
AMCG00012227 NA coding upstream 22084 13525684 ~ 13527970 (+)
AMCG00012224 mylpf,LOC108249004,LOC108443170 coding upstream 226665 13317915 ~ 13323389 (+)
AMCG00012223 NA coding upstream 242531 13303056 ~ 13307523 (+)
AMCG00012218 NA coding upstream 347662 13187382 ~ 13202392 (+)
AMCG00012242 NA coding downstream 139188 13696090 ~ 13700551 (+)
AMCG00012241 NA coding downstream 184337 13741239 ~ 13743991 (+)
AMCG00012243 NA coding downstream 230478 13787380 ~ 13788233 (+)
AMCG00012249 NA coding downstream 274679 13831581 ~ 13836820 (+)
AMCG00012248 coro1c,LOC106937262,LOC105025598 coding downstream 281553 13838455 ~ 13841993 (+)
G135257 NA non-coding upstream 8937 13537246 ~ 13541117 (+)
G135250 NA non-coding upstream 18761 13530772 ~ 13531293 (+)
G135226 NA non-coding upstream 65576 13477562 ~ 13484478 (+)
G135138 NA non-coding upstream 122055 13427351 ~ 13427999 (+)
G135137 NA non-coding upstream 129003 13417405 ~ 13421051 (+)
G135280 NA non-coding downstream 108732 13665634 ~ 13665881 (+)
G135282 NA non-coding downstream 115212 13672114 ~ 13673799 (+)
G135358 NA non-coding downstream 345405 13902307 ~ 13904536 (+)
G135359 NA non-coding downstream 347814 13904716 ~ 13905291 (+)
G135355 NA non-coding downstream 348573 13905475 ~ 13906347 (+)
G135240 NA other upstream 29560 13519421 ~ 13520494 (+)
AMCG00012228 NA other upstream 41255 13471101 ~ 13508799 (+)
G135058 NA other upstream 124695 13422435 ~ 13425359 (+)
AMCG00012217 NA other upstream 273083 13269196 ~ 13276971 (+)
G135070 NA other upstream 576001 12968377 ~ 12974053 (+)
G135264 NA other downstream 27368 13584270 ~ 13585916 (+)
AMCG00012245 NA other downstream 250311 13807213 ~ 13817545 (+)
AMCG00012247 NA other downstream 293476 13850378 ~ 13855055 (+)
AMCG00012253 NA other downstream 505335 14062237 ~ 14095797 (+)
AMCG00012262 LOC104967735 other downstream 617011 14173913 ~ 14183167 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005226 pelo coding NC_007123.7 CM002896.2 13188616 ~ 13205854 (-)