AMCG00012230


Basic Information

Item Value
gene id AMCG00012230
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13496487 ~ 13506591 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012230
TACTGATACAAGTATATAGTCACCATCAACTATATCAAGTCTAATCTTTGACTATCTTTGTTCTTGTGCTCAGTGTTATGCTTTGCCGTACCGGCCTGGGACCATGGAAACTTGGCTACCATCGCCGTCATCTTTGCCGTACAGGACCGGTTGTGCGCAGGCGCAGTCAGACGTTAAAGGGGCTGCCGGGAGCGCCTCCGCTTGACCAGAAGAGTGAGGAGACGAGTGTCGATCAGGCGTGACGCGACTcgcaaaatcacaaaaataaaaacacgaaGCTGTTCCTCAGCACAGCGAGTGATGAGCCTCCAGTTAGCCGACTCCACGGACATGTGCAGTCCTGCTCCTCTGTCCCTGTGGCCGGAGGAAGCGTCTCctgaggaggatgaggaggagggcACAGCTCTCTTGCAGCAAATGGCAGAGGAGGACGAGGAGATAGACTTGTATAATGAAGAGACCTTCGGACTGGATCTGGAGTCtggcggggaggaggaggacCCGACTGACCTCCTGCTGTTCTGTGGTGACCTGGATACCTCGGTGCCCAGCTTGCCTCCACAGCCCCCGCCACAGACTCCCCCTCCGCCCCCCCGGCCCCCTACCATGGCCAGGCCAGCCGTGATACTACAGCGCCAGCCCTCTGCTGGCCTACGGTGGCTCAGGCAGGGGCGTAGGGATGGGGGCCGCAGGGTGGTGTTTGAGGACCCGGCTGTGGTGCGCACTGTGGAGGGACGACCCAGCCTGCAGAGTCTGGACAGTGCCATCGTGGACAGTGGCGTGAGCTCGTCCTGGGAGGATGACGAGACTTCAGAAGCTGCGCTGCGTCTGCTGTCCCCCTACGGCTCCCGGGCCCCTGCCTCCATCCTACAGGACAAAGCCATCGTGAGTGTGATTGACAGGCCAAACCACCCCAGGATCCCACCCACTACGCTGAACTTCCTGTCGCCCATGTCAGGCCGTTTCTCTGCGTACTCTCCTGGGGCCAAGAGGTCCAGGGGCTTCCCGTCTCCCTCCTCTCCCAACATACGCACCCCCCCGCGCCCTTTCAACCCCAAGATGATGCTGCGGTTTGGAGCACTGTCACCCGGCCCAGGCCCCGCTCCTTTCTTCAGCCCCCCAGCCAAACCCCCCCAGAGGTTCAGGATCCCAGGTCACGTGACTCAGCTCCACCCCCAGCACAGGAGGATCCTCAGCCAACGGCAGCAGAGGTCCCAGAGGAGGGCAACGGACTCCCGCTGGGACCCCTACTCCCATATCATGACTCTGAAGGAGAAGGAGTGGGTGATCAGGCTGCAGATGATCCAGCTACAGAGCGAGAACCCGCACCTCGATGACTACTACTACCAGGAGTATTACCAGCGCCTGGAAAACAAGCTGGCGGAGGAGGAGCTGCTGGGAGACCGTGGCAAGAGAGAGCCGCCCAAGCTGACCACCCCTTACGTCACCAAGACCGACTCCTACCAGCCAGTGGTGCACATCGAGGGCTCTCTGGGCCAGGTGGCCGTGTCCACCTGCTTCTCCCCACGCCGTGCCATCGATGCCGTCCATGCGCACACCCACGAGGAGGAGCTGAAGGACACACGACAACAGAGACTGTCCATCCTTCATGACATCGAGAAGATGTACATGGTGAtgctggagctggaggagggGCAGAGGAAGGCGTCCCTGCTGCCCGAGGATGAGAGACTGCGGCTGCGGGAGCAGAGGGAACGCCGAGTCCACCGCATCTACACACAGCTGCGCCAGCCGGGGGCACACGAATTGAGTGAGGAGTTCCTGCCCTACCTGCTGGTGGCCAAGGGCAAGCGTCTGGTGTCCAGGCTCCTCCCCTACCTGTCCCACGACTCCGCGCTGCAGGTCCTGCGAGCCGTCACCACCCACCTGCCCGTGCTGATGGCAAGAGACTCCACGGGGCCCGACGAGGTGAGGGCGCATTCCCGTCCTGTAGGGTGCAGTCGGTCGGTCGGCGCGTTGGTGCGAACTAACCTTCTGTCCCAGTCTCTCCCGGTGCTGTACCCCTCTCTCTGCCAGGTGATCGGAGGGCTGTCCTTCACTCAGCTGATCAGGGTCCTGAAGGAGTTCACCGCTGCGCTGCCCGACTCCAAAGAGACGCGGCTCTACCTGGCCTGCAAGAACAAGTTTGGGATCTCCCTGCTGTACGCCCTGCTGTCTCAGGGCGAGAGGCTGCTGTCTTCAGACACCCCCATGGAGCCTAGTATTGGGGACTTTGAGAGCTGGTGAGGAGCCTGCTGCCAAATACACTTACTGCACTGatgcacatttatataaatagttaTCACTTATCAAGACCAGAGTGTTgcacaatcaataaaaaacaagttaaagCAGTtctaggaaataaaaaggtgcaGTTGAGAAGTACATATAAAATGAACATGCAGTTGATAAAATTCATGCTATAAAAGGAAGCTGTTATATGCATATGGAAAAGCaagtgtataaaaatgtatggttttaaaaatggaGGATCTAATGTTAAAAGGTGGCCTTTACAGCACAAGCACGATATCCCCTAGATTTCAGCCTAGACTTAGGAGTGCCTAAAAAAAGTCCCTGCTCTGACGATCTGAGTGGTCTTGTAATCTGAAAGACTTCGCGAGCGTCTCTGTAATGTTGGAAGGCCCCAAACCATGACGTTTgtgatttaatacaattttaaaataaaaaatctaccTGCAACCAGTGTAGAGAGGCTAGTACTGGGGTAATGTGTGTGCGGACATTTTGGTCCTAGTGCGTAGTCTAGCAGCAGAATGTTGACCAATCTGGATCTGGGCCGGTGTATGATTTAGGCCTGAAAATAAGGCATTGCAGTGGTCGAGATGTGAAGAAATGAAAGCATGCATAATTGCTCCCCTCCTCCAGGACAGACATCGTGTTCCAGGTGGCCCGGCAGCTGTCCCAGTGCTCCCTGGTGgagccgctgctgctgccctccaACCTGCTGTCCCTGTTCTGCCGATACCTGGACAAGCAGACGGTGCACCAGCTGGAGGAGAGTGTCGAGAGATCTACGGCAGGCTGCCCTGCTATTCCCTCCTAATCTGGATGCTTCATCGTGGGGGTGGGACTTATTTATtcaagctttttctttttgggggtGGGTAGGACTCCTATAGCATGTTGGGAAGATGTCTGGCGGTTTTGATAGTGAGTTCACATCTCGGAAGTCTGTGGGCTCTCCAGTCCGTCTGCACACTCCAGCAGTGTTTAGGGGAAACAGACACGGGCGTTAAACTAGACCTCTGGGTGGGGCTGTCTGGCCTCAATGCATTGTGTGCATTGGGGGTGGGGCAGTGATGGAGTTGGGGGTGTACAATGTATTTCCAATTGGACATGTTGTATAGTAGCACCGTGGgtgtttcagtctttttttttatatatatatacatgtataaatatataatagatttattttcttaaattctctatgatttatttaattttattcccttAACAAAAAATGATTTCTTGGGTTCCCTTCGAGGGGACGGCTTCTGTGAACAGACTTGATGAAACTGTAGCTACAGTTTGGTATATTTCTTCTATTggtggattttcttttctctgctgCGACGCTGCAGTATTCCTGTGTCGTTCAGTTCTGGTGTGGCCAGTGTGGGGCCTTTACGGTGCTGCCATAACCATGCATGATCTGTGTACAtctacatttctctttttttttttttttttttgtatctcggAAGTGGTTTCTAAGAGATCgtgcttttcagttttatttaatttacaactcTGTTGCCCAGtgtgacttattttattttctggagaAGTTTAGTTGACATTTGtgcacacattcacaaactGTACAGCAcctgcaaacaaataataaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K24823 PATL2; protein PAT1 homolog 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012230 True 3887 mRNA 0.53 16 13496487 13506591

Neighbor

gene id symbol gene type direction distance location
AMCG00012232 NA coding downstream 9908 13465472 ~ 13486579 (-)
AMCG00012225 NA coding downstream 204618 13281096 ~ 13291869 (-)
AMCG00012220 NA coding downstream 229640 13259410 ~ 13266847 (-)
AMCG00012219 NA coding downstream 273931 13208091 ~ 13222556 (-)
AMCG00012221 NA coding downstream 334224 13155697 ~ 13162263 (-)
AMCG00012234 NA coding upstream 3624 13510215 ~ 13518859 (-)
AMCG00012235 LOC102795145,LOC101068670 coding upstream 29604 13536195 ~ 13539367 (-)
AMCG00012237 NA coding upstream 40493 13547084 ~ 13552454 (-)
AMCG00012231 paqr4,LOC105012954,LOC106601588 coding upstream 55720 13562311 ~ 13568775 (-)
AMCG00012239 NA coding upstream 74061 13580652 ~ 13598237 (-)
G135217 NA non-coding downstream 77683 13417405 ~ 13418804 (-)
G135202 NA non-coding downstream 167443 13321731 ~ 13329044 (-)
G135193 NA non-coding downstream 217193 13270812 ~ 13279294 (-)
G135184 NA non-coding downstream 281945 13150515 ~ 13214542 (-)
G135161 NA non-coding downstream 544362 12863860 ~ 12952125 (-)
G135333 NA non-coding upstream 245319 13751910 ~ 13818084 (-)
G135405 NA non-coding upstream 347967 13854558 ~ 13856288 (-)
G135416 NA non-coding upstream 377211 13883802 ~ 13884899 (-)
G135417 NA non-coding upstream 378338 13884929 ~ 13886535 (-)
G135420 NA non-coding upstream 399211 13905802 ~ 13908557 (-)
G135146 NA other downstream 70422 12568251 ~ 13426065 (-)
AMCG00012226 cd2bp2 other downstream 196066 13296419 ~ 13300421 (-)
AMCG00012222 NA other downstream 264098 13231622 ~ 13232389 (-)
G135172 NA other downstream 395007 13082221 ~ 13101480 (-)
G135164 NA other downstream 584600 12895168 ~ 12911887 (-)
AMCG00012233 NA other upstream 13075 13519666 ~ 13524815 (-)
AMCG00012238 NA other upstream 103895 13610486 ~ 13667607 (-)
G135318 LOC100846954 other upstream 198255 13704846 ~ 13705612 (-)
AMCG00012261 NA other upstream 583477 14090068 ~ 14094688 (-)
G135814 NA other upstream 1013239 14519830 ~ 14523063 (-)

Expression


Co-expression Network