AMCG00012232


Basic Information

Item Value
gene id AMCG00012232
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13465472 ~ 13486579 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012232
ATGATGATTCAGGCTGGGGGAGAAGGAGGCCTAACTCTGAGGATGAAGCCTGGGCCTCGTGTAGAGTGTGTGCCCAGTGGAGTGAAGCCCCAGCAGGCAGGGGGAGCTCTGGGACGGATGTTTCAACCCTCAATGAGAGGGGGACAGGCTCTCGGGATGCAGAATGGGCGTGGCTACGGAGGCAAGAATCTCAAGGCGGGGGgtCGTTATCCTGGCCAGCTGGGGCCCTATGGAGCTGGAGGAAAGCCAATGAAGCCGGGATATGGAGTTCAGCCAGGATATGGAGTTCAGCCAGCCTATGGAGCCGGAAACGGCCAGGTGATGGGGCTGCCTCAGGCTGGAAAACAGAaagcagGTTACAGAGGCAATGGCTACCCATACGCTGGACAGCCTATGACAGgagCTGGAGTCACTGCAGGAACGGGGGGCAAAGGGCCCAAACCAGGCTATGGTGCAGGGATGGGTGGTCTGCAGCCTGGCTATGGCACTGGTGCTGGACTGGGACCCAAGGCAGGAAAGCAAGGCTATAGGAATGGTGCCGGGGCATTCCTGGGAAACGGCTACGGAGCAGGTCAGGCTGGGCTCCCTCAGGCTGGCAAAGTCAAGCAGGCTGGTCAGGCTGGGCTCCCTCAGGCTGGCAAAGTCAAGCAGGCTGGGTACGGTAACGGTGCGGGCGGATACCCCACAGCAGCACTTGGCAACGGCTATGGTAACGGTCAGGCTGGGCTCCCTCAGGCTGGCAAAGCCAAGCAGGCTGGGTATGGTAACGGTGCGGGCGGATACCCCACAGCAGCGCTTGGCAATGGCAATGGCAACGGCAACAGCAACGGCTATGGCAACGgtTATGGTAACGGCTACGGCAATGGCTATGCTGCCGGTCTGCAGCCAGGATATGGCGCAGGTGGCGCCGGGCCCTATGGAGCCCAGCCCGTGGTGCCAGCTGGCTTGCCTCTTGGAGCTAACGGCAAGGCAGGGAAATACGGGGGTGCTGGTGGGCTGCCCTATGGTGCTCACCCTGCTCTGCCCACTGGCATCGTCGATGATCGCAAGGCTGGGAAGTACGCCAATGGACAGCTGCCCTATGGAGGACAGGCTGTGGTGCCCGCCGGACTGGGGCCCGAAACTGGACTGGGCAAAtatgGTGGAGCTCAGCCTCCTTTTGCTGCTGCTGGCTTGGGGGACCCTTCTGCTGCCAAATATGGGGGTGCTGGTCAGCTTCCCTACAATGGAGCACCAGTGATTCCTGCTGGACTGGATGGTCCTGGGGGCGGAGCTGGGTACATGAACGGAGGACTGCAGCCAGCAGGTTACCAGGGGCAGTTGGGAGCAGGACAGGGACCCTACGGTGGGAAGGAGGGCAAATACGGGCTGAACGGATTCTTCGGCAATGGATACAGAGgctGATTCTGGGATATGGCTCGTTTGacttcagtttaatattttatcacttttatatgtttttttgtatatttgttttcttactcCTCTGTTGTTTTCACCTTTTtccctgttgtgtgtgtgtgagtgagaatCTGTACATTGTAAACTTTTTCCCATTGATCACAGAAGCAGTTATGAtctccccccccgcccccaattAATAAACAACCTagtctccccctcctcccccccagacacacacagacacacacacagacaggcttcCCTCCCTCTTTGATCATTGGACACCCTCCCCTACAACAGAATGTCCACAGAGAAGAGGCCTAAGACTAATAAAACACATGACTCCCAATGCAAGTGGTCATGATGTGTTATTTGTGAAGCTATGCAAGAGAGAGGGACTCTGTCTGGTGTTGCGGGACCCTGGTGTGTGTCTGGGACAGCTGCGGTCAAGGAAGCCCCTCCCCGCCTCTTCCTTAAAATGGCTGTATAAGCAGCGTGTGGCTGTGCTAGTATCTTTGCACACTAGGGAATAGTGTATCGAACCCAGGCAAAGATCTCGCTTCACTGGGGGTGTGGAAGTGGAGGTCAGTATGAGAGTCAGGGGGTTGGATGGGTGTGGGGTATTAACAGGGAGTGAGGGGGTGTCCCAGTCCAGTTTCAAGCAGGACAGTGTGGGGAGATTGAGGAGTGGCAAGACAGTGTAACTCAATCAGGACAGTTGGATTATTATCctatttatattgctttttttttttttgaaaagcGATTTTTAGTTATTACTTTCACCtaaaccccaaccccaaccccctACTCTGCTCTAGTCCTGGGCCTGGAGTAGATGGCATGGCCACAGATTGGGAGGGGGAGCAAGGGATTGTGGGTGTAGTAGTACACTCTTGCACTCAAGCACAGAAGGGGACAGGGAACGGCAGGACTGTTTGTTGCCAATGATGCTCACTGGTcttctagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcctcTGCCTGTGTTCAGCATCACAACCCACTGTCTCAGTTGGTAGTGCTGGAAAAAGGCTGTTTGTCTACAGTGCATTACAGCCTGACCCCTGCTTcccactctcactcacacacactctctctctctctctctctctctcacacacacacacacacacacactctcacacaatgCCTCAGAGGGGCTTTTGATGGTCTGAATAATGGGGCCAGAGTTTAAACATCAGTCCAAAGCAATTAACCCAAGCTCTATGATATcattagtgtttttaataagTTCCCTATTAAAGATATTGGTGCTAGTGCTGTATACAATAGTGTCTTTACCAGGGTCCCCTCACGTTCCCAGTGGGCAACAATGTAGGCATTCGGAGTCTGTTGCCATGGTGCTTGTCTGTTGCAAATTACTTTCTCATTTTTAACTTTTGCTGGAAAGTTTTATAAATCAACTATTTCCCTGTTTGTGTTGCAACATCTGTCCTGTCCATAGAGACCACTGACAATAAAATCTGTTCACATTGTAA

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012232 True 2952 mRNA 0.53 26 13465472 13486579

Neighbor

gene id symbol gene type direction distance location
AMCG00012225 NA coding downstream 173603 13281096 ~ 13291869 (-)
AMCG00012220 NA coding downstream 198625 13259410 ~ 13266847 (-)
AMCG00012219 NA coding downstream 242916 13208091 ~ 13222556 (-)
AMCG00012221 NA coding downstream 303209 13155697 ~ 13162263 (-)
AMCG00012214 NA coding downstream 321992 13135743 ~ 13143480 (-)
AMCG00012230 NA coding upstream 9908 13496487 ~ 13506591 (-)
AMCG00012234 NA coding upstream 23636 13510215 ~ 13518859 (-)
AMCG00012235 LOC102795145,LOC101068670 coding upstream 49616 13536195 ~ 13539367 (-)
AMCG00012237 NA coding upstream 60505 13547084 ~ 13552454 (-)
AMCG00012231 paqr4,LOC105012954,LOC106601588 coding upstream 75732 13562311 ~ 13568775 (-)
G135217 NA non-coding downstream 46668 13417405 ~ 13418804 (-)
G135202 NA non-coding downstream 136428 13321731 ~ 13329044 (-)
G135193 NA non-coding downstream 186178 13270812 ~ 13279294 (-)
G135184 NA non-coding downstream 250930 13150515 ~ 13214542 (-)
G135161 NA non-coding downstream 513347 12863860 ~ 12952125 (-)
G135333 NA non-coding upstream 265331 13751910 ~ 13818084 (-)
G135405 NA non-coding upstream 367979 13854558 ~ 13856288 (-)
G135416 NA non-coding upstream 397223 13883802 ~ 13884899 (-)
G135417 NA non-coding upstream 398350 13884929 ~ 13886535 (-)
G135420 NA non-coding upstream 419223 13905802 ~ 13908557 (-)
G135146 NA other downstream 39407 12568251 ~ 13426065 (-)
AMCG00012226 cd2bp2 other downstream 165051 13296419 ~ 13300421 (-)
AMCG00012222 NA other downstream 233083 13231622 ~ 13232389 (-)
G135172 NA other downstream 363992 13082221 ~ 13101480 (-)
G135164 NA other downstream 553585 12895168 ~ 12911887 (-)
AMCG00012233 NA other upstream 33087 13519666 ~ 13524815 (-)
AMCG00012238 NA other upstream 123907 13610486 ~ 13667607 (-)
G135318 LOC100846954 other upstream 218267 13704846 ~ 13705612 (-)
AMCG00012261 NA other upstream 603489 14090068 ~ 14094688 (-)
G135814 NA other upstream 1033251 14519830 ~ 14523063 (-)

Expression


Co-expression Network