AMCG00012249


Basic Information

Item Value
gene id AMCG00012249
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13831581 ~ 13836820 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012249
ATGGGCCAACTTGAAGGCATTGCTGAAGTTGAACCCCTGAGCCTGGCGTCCCTGTGCCCATGCATGCGATTGCCAGCCCCAGGTGCGTCTCCTGTGTCCCCTGTCAGCAGTGTAAAGACCCCACCCCCTTTAATGGTTGTGCGCAGCAGTAAGTTCCGGCACGTGTTCGGCCAGCCGGTCAAGGCTGACCAGTGCTACGATGACATGCGCATCTCCCAGATGACCTGGGACAGCACCTTCTGCTCCGTCAACCCCAAATTCCTCGCCATGATCGTGGATGCCAGCGGAGGCGGGGCCTTCATGGTGCTGCCACTCAGCAAGGTAGGACAGGGctggaagagagagggaggagagaggaagagggaagagggaagaggagggaaGGGTGTGGGTAGAGGAGGTGAGGGTGAAAAGAGcgggagaggggaggagaggcaacagggagagggaggagagaaaggCATTGAGAGGGAGGGGGAACATGGAGCATAG

Function

GO:

id name namespace
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0001654 eye development biological_process
GO:0007420 brain development biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0051015 actin filament binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012249 True 492 mRNA 0.60 3 13831581 13836820

Neighbor

gene id symbol gene type direction distance location
AMCG00012243 NA coding upstream 43348 13787380 ~ 13788233 (+)
AMCG00012241 NA coding upstream 87590 13741239 ~ 13743991 (+)
AMCG00012242 NA coding upstream 131030 13696090 ~ 13700551 (+)
AMCG00012229 pelo,LOC107674509 coding upstream 274679 13550054 ~ 13556902 (+)
AMCG00012236 NA coding upstream 287634 13541153 ~ 13543947 (+)
AMCG00012248 coro1c,LOC106937262,LOC105025598 coding downstream 1635 13838455 ~ 13841993 (+)
AMCG00012244 LOC105897688,LOC103034594,LOC101477563,LOC103367324,LOC108280818,LOC105894037 coding downstream 23230 13860050 ~ 13877142 (+)
AMCG00012246 LOC106606385,LOC102779737,LOC106597183,LOC107550235,LOC107550268 coding downstream 45424 13882244 ~ 13885130 (+)
AMCG00012255 NA coding downstream 131711 13968531 ~ 13977224 (+)
AMCG00012254 NA coding downstream 142650 13979470 ~ 13982769 (+)
G135282 NA non-coding upstream 157782 13672114 ~ 13673799 (+)
G135280 NA non-coding upstream 165700 13665634 ~ 13665881 (+)
G135255 NA non-coding upstream 206221 13532698 ~ 13625360 (+)
G135257 NA non-coding upstream 290464 13537246 ~ 13541117 (+)
G135250 NA non-coding upstream 300288 13530772 ~ 13531293 (+)
G135358 NA non-coding downstream 65487 13902307 ~ 13904536 (+)
G135359 NA non-coding downstream 67896 13904716 ~ 13905291 (+)
G135355 NA non-coding downstream 68655 13905475 ~ 13906347 (+)
G135366 NA non-coding downstream 91168 13927988 ~ 13956305 (+)
G135356 NA non-coding downstream 109496 13946316 ~ 13948827 (+)
AMCG00012245 NA other upstream 14036 13807213 ~ 13817545 (+)
G135264 NA other upstream 245665 13584270 ~ 13585916 (+)
G135240 NA other upstream 311087 13519421 ~ 13520494 (+)
AMCG00012228 NA other upstream 322782 13471101 ~ 13508799 (+)
G135058 NA other upstream 406222 13422435 ~ 13425359 (+)
AMCG00012247 NA other downstream 13558 13850378 ~ 13855055 (+)
AMCG00012253 NA other downstream 225417 14062237 ~ 14095797 (+)
AMCG00012262 LOC104967735 other downstream 337093 14173913 ~ 14183167 (+)
AMCG00012268 NA other downstream 409943 14246763 ~ 14296659 (+)
G135541 adprh,LOC107387950,LOC101076629,LOC105024377,LOC103481379,LOC103381590,LOC107094293 other downstream 538813 14375633 ~ 14377651 (+)

Expression


Co-expression Network