Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00012252 |
| gene name | LOC107755578,LOC107690283,LOC107729173,LOC107590562,LOC107567734 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030138.1 |
| NCBI id | CM030138.1 |
| chromosome length | 24262032 |
| location | 13984464 ~ 13989166 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| description |
|---|
| PREDICTED: sarcoplasmic/endoplasmic reticulum calcium ATPase 1-like isoform X3 |
| id | name | namespace |
|---|---|---|
| GO:0009612 | response to mechanical stimulus | biological_process |
| GO:0070588 | calcium ion transmembrane transport | biological_process |
| GO:0006200 | obsolete ATP catabolic process | biological_process |
| GO:0031448 | positive regulation of fast-twitch skeletal muscle fiber contraction | biological_process |
| GO:0006874 | cellular calcium ion homeostasis | biological_process |
| GO:0045988 | negative regulation of striated muscle contraction | biological_process |
| GO:0048471 | perinuclear region of cytoplasm | cellular_component |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| GO:0005793 | endoplasmic reticulum-Golgi intermediate compartment | cellular_component |
| GO:0016529 | sarcoplasmic reticulum | cellular_component |
| GO:0031673 | H zone | cellular_component |
| GO:0031674 | I band | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005388 | calcium transmembrane transporter activity, phosphorylative mechanism | molecular_function |
| GO:0005509 | calcium ion binding | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00012252 | True | 2291 | mRNA | 0.49 | 8 | 13984464 | 13989166 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00012254 | NA | coding | upstream | 1695 | 13979470 ~ 13982769 (+) |
| AMCG00012255 | NA | coding | upstream | 7240 | 13968531 ~ 13977224 (+) |
| AMCG00012246 | LOC106606385,LOC102779737,LOC106597183,LOC107550235,LOC107550268 | coding | upstream | 99334 | 13882244 ~ 13885130 (+) |
| AMCG00012244 | LOC105897688,LOC103034594,LOC101477563,LOC103367324,LOC108280818,LOC105894037 | coding | upstream | 107322 | 13860050 ~ 13877142 (+) |
| AMCG00012248 | coro1c,LOC106937262,LOC105025598 | coding | upstream | 142471 | 13838455 ~ 13841993 (+) |
| AMCG00012251 | NA | coding | downstream | 59786 | 14048952 ~ 14057554 (+) |
| AMCG00012260 | NA | coding | downstream | 110934 | 14100100 ~ 14117969 (+) |
| AMCG00012263 | NA | coding | downstream | 197561 | 14186727 ~ 14199995 (+) |
| AMCG00012273 | NA | coding | downstream | 323121 | 14312287 ~ 14314436 (+) |
| AMCG00012266 | NA | coding | downstream | 348707 | 14337873 ~ 14372596 (+) |
| G135366 | NA | non-coding | upstream | 28159 | 13927988 ~ 13956305 (+) |
| G135356 | NA | non-coding | upstream | 35637 | 13946316 ~ 13948827 (+) |
| G135355 | NA | non-coding | upstream | 78117 | 13905475 ~ 13906347 (+) |
| G135359 | NA | non-coding | upstream | 79173 | 13904716 ~ 13905291 (+) |
| G135358 | NA | non-coding | upstream | 79928 | 13902307 ~ 13904536 (+) |
| G135506 | NA | non-coding | downstream | 237824 | 14226990 ~ 14232263 (+) |
| G135540 | NA | non-coding | downstream | 378883 | 14368049 ~ 14368337 (+) |
| G135542 | NA | non-coding | downstream | 383874 | 14373040 ~ 14373945 (+) |
| G135575 | NA | non-coding | downstream | 529050 | 14518216 ~ 14521605 (+) |
| G135582 | NA | non-coding | downstream | 546358 | 14535524 ~ 14538864 (+) |
| AMCG00012247 | NA | other | upstream | 129409 | 13850378 ~ 13855055 (+) |
| AMCG00012245 | NA | other | upstream | 166919 | 13807213 ~ 13817545 (+) |
| G135264 | NA | other | upstream | 398548 | 13584270 ~ 13585916 (+) |
| G135240 | NA | other | upstream | 463970 | 13519421 ~ 13520494 (+) |
| AMCG00012228 | NA | other | upstream | 475665 | 13471101 ~ 13508799 (+) |
| AMCG00012253 | NA | other | downstream | 73071 | 14062237 ~ 14095797 (+) |
| AMCG00012262 | LOC104967735 | other | downstream | 184747 | 14173913 ~ 14183167 (+) |
| AMCG00012268 | NA | other | downstream | 257597 | 14246763 ~ 14296659 (+) |
| G135541 | adprh,LOC107387950,LOC101076629,LOC105024377,LOC103481379,LOC103381590,LOC107094293 | other | downstream | 386467 | 14375633 ~ 14377651 (+) |
| G135544 | NA | other | downstream | 388506 | 14377672 ~ 14378695 (+) |
