AMCG00012253


Basic Information

Item Value
gene id AMCG00012253
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14062237 ~ 14095797 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012253
ATGGTGGCGGGGGAGGCGGCTGTGTGTCACTGGAGCTCCGGAGCGGACGGGCCGCCTGTGCAGAGCCGAGGAGCCGGGAGGAGAGAGTGGAGCTGCGGCCGGACGGAGGGGGAGGCCCGGGGAGCTTTCGTTGTACCCGGACCCAGACCAGAGCTAGAGACGGATGGAGCTGTGCACCAGATCCAGTTGTGCTGTTGTAACGACCCCCCATTCTTCTGCTATTCTCTTTCCCTCCTGCACAGACAGGCGAACACACAACTTGACAGCATGAACACACGGAGCAGGAATGTGAGCACAGTGTCCAACAGGGAGAAACTGCAAAAGAGGAAGCCTGTGGTGACCAGGCGGCCAGACAGCCATTACAGGGAGTTCAGTGAGCAGCACAAGACTGGAAAAGAGCTGAAGATCAGCGCTGTGTTCTCTGTGGGAGGTCACACAGCTGGGGGGAACAGGACATTGGGGGTGACTGTCCGGCCCAGGCTTCTGACGGTGCCTGCCGACCCCCAGGCCACTCCGCCCTCCTcgctgcccccccgccccgctACCTCGGCCCCCCCAGCCAGCCGGCTGATGTGCTCCACCTGTAAGGTGCTGCTGCAGAAAGGCCAGATGGCCTACCAGCGCAAGGACTCCACACAGCTGTTCTGCTCCACGCGGTGTCTGACTGGCAACACGGTGCCCGCCGTGCCCACCGTGCTGAGGAAGACCTGCCACTTCTGCCTCAAGGAGATTGGTATCCCCAAGGATGTGATCTCGGCCCCTGTGGACACTGTGGGGACGGTGAAGGATTTCTGCAGCacgccctgtctgtctgcattcAACAGTGAGCGCAAGACCACGGCGTCCACTGAGGGCGAAAAGTGCAGCATGTGCCGGAGGACAGCCATAATAAGTCATGAGGTGACCCGCCAGGGTGCGCTTTACAAGCTGTGCAGCGACTCCTGCTTCTCCCACTTCCGCTCTGTCAAAAACCTCGCTATGAACTGCTGTGAGAACTGCAGGCGCCACAGCGGGGGGCGGCAGTGCCACGTGCTGCAGATCGAGGGCACCACAAAGAAGTTCTGCAGTCCCGCCTGCATCACCGCGTACAAGCTGagtgGGAAGGTGATGCCCTGCACAGTGTGTCAGTCGCTGCGCTCCTCTGCCAAGATGTTGGAGAACACCAGTCCCGAGGGCGTCACCGAGCTCTTCTGCTCCATCAGCTGCCAGTCTGCCTACAGGTTGCAGGACTTCACTACATCA
>TU170041
GTTCGATGTCATTGCATGTATTACTGTACTTCATTAATCAAAAAGGGAGTTTAAAAATACGCATGCTCAGCATTGCGTAGAAATCTAAGAGACGTAACCGGAGAGGCAGCCGGGAACTGTTGTATCCTACAGCGGTGTCGGAGTCCCGGGTGGAAATAACccgcagacagagagaaaacgAGGCGCTGAGGCGGAGGCTGCAGGAGCTCATGGTGGCGGGGGAGGCGGCTGTGTGTCACTGGAGCTCCGGAGCGGACGGGCCGCCTGTGCAGAGCCGAGGAGCCGGGAGGAGAGAGTGGAGCTGCGGCCGGACGGAGGGGGAGGCCCGGGGAGCTTTCACAGGCGAACACACAACTTGACAGCATGAACACACGGAGCAGGAATGTGAGCACAGTGTCCAACAGGGAGAAACTGCAAAAGAGGAAGCCTGTGGTGACCAGGCGGCCAGACAGCCATTACAGGGAGTTCAGTGAGCAGCACAAGACTGGAAAAGAGCTGAAGATCAGCGCTGTGTTCTCTGTGGGAGGTCACACAGCTGGGGGGAACAGGACATTGGGGGTGACTGTCCGGCCCAGGCTTCTGACGGTGCCTGCCGACCCCCAGGCCACTCCGCCCTCCTcgctgcccccccgccccgctACCTCGGCCCCCCCAGCCAGCCGGCTGATGTGCTCCACCTGTAAGGTGCTGCTGCAGAAAGGCCAGATGGCCTACCAGCGCAAGGACTCCACACAGCTGTTCTGCTCCACGCGGTGTCTGACTGGCAACACGGTGCCCGCCGTGCCCACCGTGCTGAGGAAGACCTGCCACTTCTGCCTCAAGGAGATTGGTATCCCCAAGGATGTGATCTCGGCCCCTGTGGACACTGTGGGGACGGTGAAGGATTTCTGCAGCacgccctgtctgtctgcattcAACAGTGAGCGCAAGACCACGGCGTCCACTGAGGGCGAAAAGTGCAGCATGTGCCGGAGGACAGCCATAATAAGTCATGAGGTGACCCGCCAGGGTGCGCTTTACAAGCTGTGCAGCGACTCCTGCTTCTCCCACTTCCGCTCTGTCAAAAACCTCGCTATGAACTGCTGTGAGAACTGCAGGCGCCACAGCGGGGGGCGGCAGTGCCACGTGCTGCAGATCGAGGGCACCACAAAGAAGTTCTGCAGTCCCGCCTGCATCACCGCGTACAAGCTGagtgGGAAAGCGATGCCCTGCACAGTGTGTCAGTCGCTGCGCTCCTCTGCCAAGATGTTGGAGAAN

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012253 False 1242 mRNA 0.61 8 14062446 14069189
TU170041 True 1257 TUCP 0.60 8 14062237 14095797

Neighbor

gene id symbol gene type direction distance location
AMCG00012251 NA coding upstream 4683 14048952 ~ 14057554 (+)
AMCG00012252 LOC107755578,LOC107690283,LOC107729173,LOC107590562,LOC107567734 coding upstream 73071 13984464 ~ 13989166 (+)
AMCG00012254 NA coding upstream 79468 13979470 ~ 13982769 (+)
AMCG00012255 NA coding upstream 85013 13968531 ~ 13977224 (+)
AMCG00012246 LOC106606385,LOC102779737,LOC106597183,LOC107550235,LOC107550268 coding upstream 177107 13882244 ~ 13885130 (+)
AMCG00012260 NA coding downstream 4303 14100100 ~ 14117969 (+)
AMCG00012263 NA coding downstream 90930 14186727 ~ 14199995 (+)
AMCG00012273 NA coding downstream 216490 14312287 ~ 14314436 (+)
AMCG00012266 NA coding downstream 242076 14337873 ~ 14372596 (+)
AMCG00012276 NA coding downstream 303316 14399113 ~ 14410440 (+)
G135366 NA non-coding upstream 105932 13927988 ~ 13956305 (+)
G135356 NA non-coding upstream 113410 13946316 ~ 13948827 (+)
G135355 NA non-coding upstream 155890 13905475 ~ 13906347 (+)
G135359 NA non-coding upstream 156946 13904716 ~ 13905291 (+)
G135358 NA non-coding upstream 157701 13902307 ~ 13904536 (+)
G135506 NA non-coding downstream 131193 14226990 ~ 14232263 (+)
G135540 NA non-coding downstream 272252 14368049 ~ 14368337 (+)
G135542 NA non-coding downstream 277243 14373040 ~ 14373945 (+)
G135575 NA non-coding downstream 422419 14518216 ~ 14521605 (+)
G135582 NA non-coding downstream 439727 14535524 ~ 14538864 (+)
AMCG00012247 NA other upstream 207182 13850378 ~ 13855055 (+)
AMCG00012245 NA other upstream 244692 13807213 ~ 13817545 (+)
G135264 NA other upstream 476321 13584270 ~ 13585916 (+)
G135240 NA other upstream 541743 13519421 ~ 13520494 (+)
AMCG00012228 NA other upstream 553438 13471101 ~ 13508799 (+)
AMCG00012262 LOC104967735 other downstream 78116 14173913 ~ 14183167 (+)
AMCG00012268 NA other downstream 150966 14246763 ~ 14296659 (+)
G135541 adprh,LOC107387950,LOC101076629,LOC105024377,LOC103481379,LOC103381590,LOC107094293 other downstream 279836 14375633 ~ 14377651 (+)
G135544 NA other downstream 281875 14377672 ~ 14378695 (+)
AMCG00012267 NA other downstream 292241 14388038 ~ 14389685 (+)

Expression


Co-expression Network