AMCG00012267


Basic Information

Item Value
gene id AMCG00012267
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14388038 ~ 14389685 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012267
aCAGCAGCTATAAAAAgggaaggaggagaggaaaaacaaaaacaaagccagcGTGAGAGAGAAACCGACTTTTTGGCCGCAAACGATAAAACCGTATTTTCCTTTTGCATACGTTTCCGATCGAAACCGCCGCCACATAATTTTGTAAGAAATCGTATTTTAATTCTTGTTCCGATTTCAAAAGTGACCGCTAAGCGTCGTTTTATTGTCCGGtacataaaaccaaaaatgtcCAGTTTCGTAGACGTGAAGAACTTGGAGCCCACCGAGTTTGAGGGCGTTTATTATGACCAATACGACTACTACAACCTGACGGACAAATACTGCGTGAGCTCCAGCAGGAAGGGGCGCTCCAAGCGGGAGGCCAGCTGTAACACCAACAGACCCATCCCCGCCGGGCACGAGCGCAAAATCGTGGAGAAACTGCAGAACAGTCAACGCAGGGCCCGGGAGTGAGCCGCTGAGAGCCACTGACacaggtgagtgtgtgtgagacccTGGCACGGGTGAGAGTTGGAGAGATTGGGTGGGCAACAGCAGAGAGATGGGGAGTGAGGGAATGGGTGTCTAATGGGAAGTGCAAGGGATGAGACGGATTAGAGACTAGTGCTCCATTAACCGCCacctctcctccccctccagTGTCTCCCGGACAGCCCATCCCGGCAATGGACCACAGCAGCCTGAGTGATTGAGCCAGGAAACGACAGAACCACGGACGGGTGGATGGACAGATGGACTGACTGATAAGGGGAGCGGGGGAGTCCAGTCTGCCGAGACTGCACAAGAGACCCCATCCAGACTGAATGAGCAAGACTAGGTgtgggagggagtgagggacTCATCCTGCAGCAGGAATGGAAGAGTGGGAAAGGAGGGGATGAAGAGATGTAAAGTAAGGAAAGGAAGGAGGGAAGGTCTAtattaaatatcagttttaatatttagtttcCAGTTTTAAAATCTATTCTGTATGTAATCTACTTCAGTGGGGTTTACTGATGGTTGTTGCAGGTGCCTTCAGTGTAGGACGGTTTTGTATTTGAGTTGATTGGAAACTGTACTCCCCTCTCACGTGTGTGTAGCTGATGTAACTGAGCTAGTCGGAGGTCTAGACtttagacctttttttttttttttttt
>TU170281
aaaaacaaagccagcGTGAGAGAGAAACCGACTTTTTGGCCGCAAACGATAAAACCGTATTTTCCTTTTGCATACGTTTCCGATCGAAACCGCCGCCACATAATTTTGTAAGAAATCGTATTTTAATTCTTGTTCCGATTTCAAAAGTGACCGCTAAGCGTCGTTTTATTGTCCGGtacataaaaccaaaaatgtcCAGTTTCGTAGACGTGAAGAACTTGGAGCCCACCGAGTTTGAGGGCGTTTATTATGACCAATACGACTACTACAACCTGACGGACAAATACTGCGTGAGCTCCAGCAGGAAGGGGCGCTCCAAGCGGGAGGCCAGCTGTAACACCAACAGACCCATCCCCGCCGGGCACGAGCGCAAAATCGTGGAGAAACTGCAGAACAGTCAACGCAGGGCCCGGGAGTGAGCCGCTGAGAGCCACTGACacagTGTCTCCCGGACAGCCCATCCCGGCAATGGACCACAGCAGCCTGAGTGATTGAGCCAGGAAACGACAGAACCACGGACGGGTGGATGGACAGATGGACTGACTGATAAGGGGAGCGGGGGAGTCCAGTCTGCCGAGACTGCACAAGAGACCCCATCCAGACTGAATGAGCAAGACTAGGTgtgggagggagtgagggacTCATCCTGCAGCAGGAATGGAAGAGTGGGAAAGGAGGGGATGAAGAGATGTAAAGTAAGGAAAGGAAGGAGGGAAGGTCTAtattaaatatcagttttaatatttagtttcCAGTTTTAAAATCTATTCTGTATGTAATCTACTTCAGTGGGGTTTACTGATGGTTGTTGCAGGTGCCTTCAGTGTAGGACGGTTTTGTATTTGAGTTGATTGGAAACTGTACTCCCCTCTCACGTGTGTGTAGCTGATGTAACTGAGCTAGTCGGAGGTCTAGACtttagaccttttttttttttttttttaaaatgttctctgaCTTTCAGGGGGATTTTAAACTTCAGTAACAACCTGTaaccatgtattttatttttttaatttct

Function

GO:

id name namespace
GO:0009267 cellular response to starvation biological_process
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0071467 cellular response to pH biological_process
GO:0071470 cellular response to osmotic stress biological_process
GO:0071502 cellular response to temperature stimulus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012267 True 1143 mRNA 0.49 2 14388038 14389607
TU170281 False 1021 TUCP 0.47 3 14388075 14389685

Neighbor

gene id symbol gene type direction distance location
AMCG00012266 NA coding upstream 15442 14337873 ~ 14372596 (+)
AMCG00012273 NA coding upstream 73602 14312287 ~ 14314436 (+)
AMCG00012263 NA coding upstream 188043 14186727 ~ 14199995 (+)
AMCG00012260 NA coding upstream 270069 14100100 ~ 14117969 (+)
AMCG00012251 NA coding upstream 330484 14048952 ~ 14057554 (+)
AMCG00012276 NA coding downstream 9428 14399113 ~ 14410440 (+)
AMCG00012274 NA coding downstream 26322 14416007 ~ 14423640 (+)
AMCG00012277 NA coding downstream 38274 14427959 ~ 14434886 (+)
AMCG00012278 NA coding downstream 49023 14438708 ~ 14443094 (+)
AMCG00012275 NA coding downstream 55379 14445064 ~ 14452229 (+)
G135542 NA non-coding upstream 14093 14373040 ~ 14373945 (+)
G135540 NA non-coding upstream 19701 14368049 ~ 14368337 (+)
G135506 NA non-coding upstream 155775 14226990 ~ 14232263 (+)
G135366 NA non-coding upstream 431733 13927988 ~ 13956305 (+)
G135575 NA non-coding downstream 128531 14518216 ~ 14521605 (+)
G135582 NA non-coding downstream 145839 14535524 ~ 14538864 (+)
G135594 NA non-coding downstream 173891 14563576 ~ 14576998 (+)
G135595 NA non-coding downstream 180690 14570375 ~ 14610737 (+)
G135606 NA non-coding downstream 207445 14597130 ~ 14601583 (+)
G135544 NA other upstream 9343 14377672 ~ 14378695 (+)
G135541 adprh,LOC107387950,LOC101076629,LOC105024377,LOC103481379,LOC103381590,LOC107094293 other upstream 10387 14375633 ~ 14377651 (+)
AMCG00012268 NA other upstream 91379 14246763 ~ 14296659 (+)
AMCG00012262 LOC104967735 other upstream 204871 14173913 ~ 14183167 (+)
AMCG00012253 NA other upstream 292241 14062237 ~ 14095797 (+)
G135566 NA other downstream 45280 14434965 ~ 14435728 (+)
G135573 NA other downstream 194439 14584124 ~ 14585770 (+)
AMCG00012294 NA other downstream 320559 14710244 ~ 14726783 (+)
AMCG00012300 NA other downstream 574359 14964044 ~ 15245994 (+)
G135649 NA other downstream 598613 14988298 ~ 15009803 (+)

Expression


Co-expression Network