AMCG00012275


Basic Information

Item Value
gene id AMCG00012275
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14445064 ~ 14452229 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012275
CCCCGAGCAACACGTAGCCGTCGCGCAGCCAGAGACTACATTTCCCGAAAGCCTCCGCGGCACCAGCACTTGAGGCGCCGGCGGGGTGGTGGGTTGACGTGGCCGGTGTGGTGGACTCGACCGGGGTGATTTAAACTCACACGCAGGAGCCGGCAGCAGAGACGGGGGGCTGCTCTTCCACTGCAATTTTTCTCCAACAGCTTTTCGGTCCTTTATTAGTTTTCGCTCACGCTGCTGCCTTTTTGAAACGAATATGTCGGGGAAGATTAAGTCTCGAAGTGCCGCCAACGCCGACTCCATGAGCGGCAGTGTGTCCTGCAACGAGCGCATCCTGCGGGACTGCCACCAACTCTACACCGACTGCGACAGCGAGGAGCACATCCAGCGCACTGGTGTGGCCATCGAGACTCAGGGTTTCAGCATCGTCACCAGTGGCCGCAAGAGGGAGTCCCTCACTGGCAACGCGACCCTTCACCTTTACCCCCACTTCAAGTCCCTGCAGCAGTTCAAAGGGGTGTCGGAGTACATGGGCACAGAGATCTCCACGTCCCGCCAGAAGCGTTTCAGTTTGGTGACGTTTGTGGACACGCCCGGCCTGGTGGACGGGGACATGAAGTACCCCTTCGACGTGGACCAGGCGCTGTTGTGGCTCGGCGAGCTGTGTGACCTGGTGCTGGTGTTCTTCGACCCGATGGGCCAGGCGCTGTGCAAGCGCACCCTAAACATCGTGGAGCGGCTCAACGAGGCGCAGGGAGACAAGCTCCGCTTCTACCTGAGTAAGGCTGACGAGGCCGGCACCGAGAGCGACAGACAGagGGTGATGATGCAGATCGTACAGGAGCTGTGCAAGAGACCCGGATTGAACAAGTGCGGCTTCGACATGCCCACCATCTACATCCCCAACCCCAACAAGCCGAGCCGCTGTGTGAACCAGGTGGAGGAGGTGTGCAAGACCATCGAGAAGACCATCAACCAGACAGTGCAGAACACCCTGAACTCGCTGGAGAAGGACTGCGAGCTCATCGGCACGGCCATCACCGACACACTGAGCGCTGACCGGCAGGCCGCAGTGAGTAACCGCTCCGCCCGCTGTAAGGGCTGTGTGCTGGGGCTGCTGGGTGCCgtgctgccgctgctgctgctgagtGGCCCAGTGGACAAGGTGGTGAACTCCCTGTCCGTGCAGTCCCAGCTGTACTGCTGCGGGGGGCTGGTGCTGCTGTccttcctgctgctgctcctggcCAGACTGTCCTTCCGCACTCGCCCCACGCTCTCGGGGAAGCAGAAGAGGCAGCTGCAGGACAGGCTGGAGTACGTGCAGGAGGTGGTCAAGGAGAAGAAGaAGAAGTTGTATGCAGAATACCTCCGGCAGAGCGTGGGAGATCACGACATGGACTGAAGTGTGGGGGGGACCCCGAAAAACAGCACTAACATGACTCCCCATCACTGCCCACCCCCCTACAGCCACAGCTGAACACTGCCGCCACTACAGCCTGTGACACAATAAGATTGATTCTGGGGGGTGGGTGTAGTCCCGTGCTGACAGGTGACAATGCTCTACTCTCAGATGTCTATTGCTCTACAAACATTTCCCATGATTCCCAGCTCACAACGACGAGGTCACCGCCAAATTCCAAGATTCTAAATGGGAGTCGAGTCACTGCACTATATCCCCCACGAGGCCTTGCTTTTTGCCCCAGCTATGGTAGCAGGGACCCCGGGGAAATGTAGTTTAGCTCCCAGTCCTGCCTGTGAATGTTACTTGAGCTCTGGGAATGAACTAAAAGACTATAGTGTCCACCATAGCAAGCCCACTTTCTCACTATTCACACTAGAACACTATGGGGTTGTAGTCCTTgtcattgtattacatttttattatgcatttcattagTCACTCTCTCCCACAATGCCTTAGTCTTCAGTGTCCGATCATGGCTTCTGGCTGATGCTAGCAAAGCATCATGGTCTTTGTAGTTGTCCGCACCCTAATGATGTCTTCAATGCGATCCCTCTGTACTGTTACACTGTAAGTCTATTTTATATCTTTTGTAATAAGATTTTATAAGTGAAGTCAAGACTACACTACTACCATAATGCTTTTCTCACTGGTTTGCCAGTCTGAGTGTTTACTTGAGCATCATGGGAGCCTGTAGTCCATGTGTCAGTGGGGGGGGAGGTGTTGACTGTAGGATTTAACTAACACTGTGGAAAGATTGTCGTCTTTATACTGggaataaatgcataaaaatacagaacagtTGAATGATTTGTAGTATCTTCATTTACCGCAAGGTGGCACCATTACTCCACAATCGCTCCTGATTCCACAGCTCCACTCACTTTACGTGTATTTACAGTGTAGCTAGTGTGTAATAAGTGTAGTTGGGGAATTTTGCAACTAGATGTATCAATTCAGCTGCTTTTCTTTCACTGTAACTGTGAACCAAAATACACTTGGGCTTCTTTCTCAGTACTGGCAGTCAGATACTGCCCATGTGTGTCATAGTTGCCAACAACTGTTCcaatattacaatacaaacaCCTGAGGTtgatttttattacaatttgtttttattataaagtgcTGCAAAATGACAGCCCTGAAACACAGCTGTGCTGTtaacacattacacaaaatacaaaccataGC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012275 True 2656 mRNA 0.53 11 14445064 14452229

Neighbor

gene id symbol gene type direction distance location
AMCG00012278 NA coding upstream 1970 14438708 ~ 14443094 (+)
AMCG00012277 NA coding upstream 10178 14427959 ~ 14434886 (+)
AMCG00012274 NA coding upstream 21424 14416007 ~ 14423640 (+)
AMCG00012276 NA coding upstream 34624 14399113 ~ 14410440 (+)
AMCG00012266 NA coding upstream 72468 14337873 ~ 14372596 (+)
AMCG00012279 NA coding downstream 115138 14567367 ~ 14570192 (+)
AMCG00012284 asphd2,LOC105891569,LOC107687974,LOC106585499 coding downstream 172290 14624519 ~ 14627965 (+)
AMCG00012285 LOC106579440,LOC106676660,LOC101486406,LOC100704476,LOC105890664,LOC108425940,LOC107578711 coding downstream 185741 14637970 ~ 14638967 (+)
AMCG00012293 NA coding downstream 201210 14653439 ~ 14655115 (+)
AMCG00012298 NA coding downstream 462355 14914584 ~ 14915573 (+)
G135542 NA non-coding upstream 71119 14373040 ~ 14373945 (+)
G135540 NA non-coding upstream 76727 14368049 ~ 14368337 (+)
G135506 NA non-coding upstream 212801 14226990 ~ 14232263 (+)
G135366 NA non-coding upstream 488759 13927988 ~ 13956305 (+)
G135575 NA non-coding downstream 65987 14518216 ~ 14521605 (+)
G135582 NA non-coding downstream 83295 14535524 ~ 14538864 (+)
G135594 NA non-coding downstream 111347 14563576 ~ 14576998 (+)
G135595 NA non-coding downstream 118146 14570375 ~ 14610737 (+)
G135606 NA non-coding downstream 144901 14597130 ~ 14601583 (+)
G135566 NA other upstream 9336 14434965 ~ 14435728 (+)
AMCG00012267 NA other upstream 55379 14388038 ~ 14389685 (+)
G135544 NA other upstream 66369 14377672 ~ 14378695 (+)
G135541 adprh,LOC107387950,LOC101076629,LOC105024377,LOC103481379,LOC103381590,LOC107094293 other upstream 67413 14375633 ~ 14377651 (+)
AMCG00012268 NA other upstream 148405 14246763 ~ 14296659 (+)
G135573 NA other downstream 131895 14584124 ~ 14585770 (+)
AMCG00012294 NA other downstream 258015 14710244 ~ 14726783 (+)
AMCG00012300 NA other downstream 511815 14964044 ~ 15245994 (+)
G135649 NA other downstream 536069 14988298 ~ 15009803 (+)
G135670 NA other downstream 667496 15119725 ~ 15623881 (+)

Expression


Co-expression Network