AMCG00012284 (asphd2,LOC105891569,LOC107687974,LOC106585499)


Basic Information

Item Value
gene id AMCG00012284
gene name asphd2,LOC105891569,LOC107687974,LOC106585499
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14624519 ~ 14627965 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012284
tcagtgATGATGCAGTGGGATCTGGAGTCTCTGGTGTCGGTGGTCCTGTCCCGCGCTCCCTCTCCGGGGCTGGGTGGGCGGCCGCTGACCGGGCTGCTGTGGGCCCTGCTGGTCCTGTTCCTGTGGTACTGCTACCGGGTCGGGGTGGAGAGCGCCGGCCCGGCCCGAGCCCAGTGCTCCCGCCACCGGCGCCGCCGCCCCCCCCGCCTCCAGTCTGCCTCCGGGCCCGTCTCCCTGGGCGACGCGGGGCTGCCCTTCATCGCCATGGAGACGgcgggggaggaggaggaggacgaggaagaggaggaggaggagctgggggGGGCGGGGCGGTGCCGGGGTTACCTGACCCCGGTGCTAGGCCACGCACTATTCCCAGGCCAGGCCCCGCCCCCCAGCCGGCGGCTCTATGGTGCCCTACAGGAGTACGCCAAGAGGTACTCCTGGGCTGGCATGGGCCGCATACACAAGGGGCTGCGGGAGCAGGGTCGTCTCCTCTCAGAGAGGCACTCTATCCAGAGGCCCCAGGTGTTCTTCCTGCCCGACGTTCCCAGCATCCCCTTCTTCCCCCGGGACGCCCAGCGCCATGACATCGAGGTCCTGGAAGCCAGCTATCCCATCATCCTCTCTGAGTTCCAGGCTGTGTACCAGAGGGGCGTGGACCCCAAGCTGGGCTGGACTGTGGGGGGCCCTGGTCAGCCCAAGggttaCTCAGTGTTCTCTCTGTACAggcTGCAGACACCTCCTAACTGTGagctggtggtggggggggagccTCAGTGCTGGTCAGAGGGACACTGCCTCCTAGTGGACGACTCCTTCCTGCACAGCGTCTCCCACAACGGCACTGTGGAGGACGGCCCGCGCGTGGTCTTCACTGTGGACCTCTGGCACCCCAATGTGGCCGCGGCCGAGAGACAAGCCCTGGACTACATCTTCGCCCCTGAGCAatagactgacacactgaaaatactgacacactgatcaTTCTGACATACTGAaaatactgacacactgacatcaCTGAAACACTGCCACACTGATTGACAAACTGATACACTGATATGTGCTGACTAACTGACcgactgtgtctctgtctgtctggctgTATACAGCTGTCAGccgctctgtctgtctgtgtgtctgtgttactgtcagcgtgtctgtctgtccgtctctgtgtctctgtccctctgactTTTCGAAGCCGCCCACTGTTTTTTACCCATGATACCCCGCTTCCTGCCTGGGACACCAATCAGAGGAGCTGAAGCAGAGGGAGCAGCCACAGCGGGGTGCTGCACCACAGAGAGTTGAGTTGAGGCCTTCACCCCACCTCCACCCCGTCTCTTGGGGGCGCTGGTCTTGTACGCCTCACCTAGTTACTGTTGCTAGGTCTGACACGCAAAGGAGAAAGTGCCATAGGGAAACACAGAGATCCCAGTTAGCCCGTGCGTGACATCTGTGTCCTTTCACACTGAGCGCGtgcagattatttattattatgattaatttcGTAGCacacgcccttatccagagcgacttacagtttacataagaAACACTTGAAACACTTTTTGTCTGTCTTAATATTGACCTccatctctgtctttctctctgtctttgtctctgttTAATTACCTCtaacagtctgtctgtctgtctgcctgtctgcttgtttacctttctctctctatctgtcttgtctgtctgtctgtgcctctCTGGCTCTCTTTGATTGTCAACCCCAAACTAGTGTGTTGctctccgtgtgtgtgtgtcaccgTCAGCTtacctgtctgtctgactgCTCTCTTACTATTCCCGCTGTCTTGTGTATCTGTAAAGCAAACGtatcaagaaaaatatatattattattattatcctgaTACTGTTGTGAAGAG

Function

symbol description
asphd2 Predicted to enable 2-oxoglutarate-dependent dioxygenase activity. Predicted to act upstream of or within peptidyl-amino acid modification. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ASPHD2 (aspartate beta-hydroxylase domain containing 2).

NR:

description
PREDICTED: aspartate beta-hydroxylase domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012284 True 1905 mRNA 0.57 5 14624519 14627965

Neighbor

gene id symbol gene type direction distance location
AMCG00012279 NA coding upstream 54327 14567367 ~ 14570192 (+)
AMCG00012275 NA coding upstream 172290 14445064 ~ 14452229 (+)
AMCG00012278 NA coding upstream 181425 14438708 ~ 14443094 (+)
AMCG00012277 NA coding upstream 189633 14427959 ~ 14434886 (+)
AMCG00012274 NA coding upstream 200879 14416007 ~ 14423640 (+)
AMCG00012285 LOC106579440,LOC106676660,LOC101486406,LOC100704476,LOC105890664,LOC108425940,LOC107578711 coding downstream 10005 14637970 ~ 14638967 (+)
AMCG00012293 NA coding downstream 25474 14653439 ~ 14655115 (+)
AMCG00012298 NA coding downstream 286619 14914584 ~ 14915573 (+)
AMCG00012305 NA coding downstream 768387 15396352 ~ 15397381 (+)
AMCG00012303 NA coding downstream 771468 15399433 ~ 15400438 (+)
G135595 NA non-coding upstream 13782 14570375 ~ 14610737 (+)
G135606 NA non-coding upstream 22936 14597130 ~ 14601583 (+)
G135594 NA non-coding upstream 47521 14563576 ~ 14576998 (+)
G135582 NA non-coding upstream 85655 14535524 ~ 14538864 (+)
G135575 NA non-coding upstream 102914 14518216 ~ 14521605 (+)
G135625 NA non-coding downstream 35787 14663752 ~ 14707073 (+)
G135634 NA non-coding downstream 47887 14675852 ~ 14677500 (+)
G135656 NA non-coding downstream 176515 14804480 ~ 14804953 (+)
G135657 NA non-coding downstream 183773 14811738 ~ 14818725 (+)
G135721 NA non-coding downstream 723920 15351885 ~ 15357725 (+)
G135573 NA other upstream 38749 14584124 ~ 14585770 (+)
G135566 NA other upstream 188791 14434965 ~ 14435728 (+)
AMCG00012267 NA other upstream 234834 14388038 ~ 14389685 (+)
G135544 NA other upstream 245824 14377672 ~ 14378695 (+)
G135541 adprh,LOC107387950,LOC101076629,LOC105024377,LOC103481379,LOC103381590,LOC107094293 other upstream 246868 14375633 ~ 14377651 (+)
AMCG00012294 NA other downstream 82279 14710244 ~ 14726783 (+)
AMCG00012300 NA other downstream 336079 14964044 ~ 15245994 (+)
G135649 NA other downstream 360333 14988298 ~ 15009803 (+)
G135670 NA other downstream 491760 15119725 ~ 15623881 (+)
AMCG00012309 NA other downstream 538579 15166544 ~ 15808521 (+)

Expression


Co-expression Network