AMCG00012285 (LOC106579440,LOC106676660,LOC101486406,LOC100704476,LOC105890664,LOC108425940,LOC107578711)


Basic Information

Item Value
gene id AMCG00012285
gene name LOC106579440,LOC106676660,LOC101486406,LOC100704476,LOC105890664,LOC108425940,LOC107578711
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14637970 ~ 14638967 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012285
GAGCGGGAGCTGGCTGACGATGAGATTGAAGtGGGTGGCAGGGTGGACTTTGATGATTTTGTGGAGCTCATGGCCCCCAAACTGCTGGCAGAGACGGCGGGAATGATTGGAATGAAGGAGCTGAGGGACGCCTTCaaagagttTGATGCAAACGGCGACGGCGAGATCACCATCGAGGAGCTGCGCCAGGCCATGGTGAAGCTGCTGGGCGAGCAGATGAGCTGCCGCGAGATCGAGGCCGTGGTGCGGGAGGCCGACCGCAATGGAGACGGCACGGTGGACTTCGAgggtgagggggagagagagagagacgctgCTGATCAATAG

Function

NR:

description
PREDICTED: calcium-binding protein 5-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23531 CABP1_2_4_5; calcium-binding protein 1/2/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012285 True 327 mRNA 0.60 3 14637970 14638967

Neighbor

gene id symbol gene type direction distance location
AMCG00012284 asphd2,LOC105891569,LOC107687974,LOC106585499 coding upstream 10005 14624519 ~ 14627965 (+)
AMCG00012279 NA coding upstream 67778 14567367 ~ 14570192 (+)
AMCG00012275 NA coding upstream 185741 14445064 ~ 14452229 (+)
AMCG00012278 NA coding upstream 194876 14438708 ~ 14443094 (+)
AMCG00012277 NA coding upstream 203084 14427959 ~ 14434886 (+)
AMCG00012293 NA coding downstream 14472 14653439 ~ 14655115 (+)
AMCG00012298 NA coding downstream 275617 14914584 ~ 14915573 (+)
AMCG00012305 NA coding downstream 757385 15396352 ~ 15397381 (+)
AMCG00012303 NA coding downstream 760466 15399433 ~ 15400438 (+)
AMCG00012306 NA coding downstream 791321 15430288 ~ 15430887 (+)
G135595 NA non-coding upstream 27233 14570375 ~ 14610737 (+)
G135606 NA non-coding upstream 36387 14597130 ~ 14601583 (+)
G135594 NA non-coding upstream 60972 14563576 ~ 14576998 (+)
G135582 NA non-coding upstream 99106 14535524 ~ 14538864 (+)
G135575 NA non-coding upstream 116365 14518216 ~ 14521605 (+)
G135625 NA non-coding downstream 24785 14663752 ~ 14707073 (+)
G135634 NA non-coding downstream 36885 14675852 ~ 14677500 (+)
G135656 NA non-coding downstream 165513 14804480 ~ 14804953 (+)
G135657 NA non-coding downstream 172771 14811738 ~ 14818725 (+)
G135721 NA non-coding downstream 712918 15351885 ~ 15357725 (+)
G135573 NA other upstream 52200 14584124 ~ 14585770 (+)
G135566 NA other upstream 202242 14434965 ~ 14435728 (+)
AMCG00012267 NA other upstream 248285 14388038 ~ 14389685 (+)
G135544 NA other upstream 259275 14377672 ~ 14378695 (+)
G135541 adprh,LOC107387950,LOC101076629,LOC105024377,LOC103481379,LOC103381590,LOC107094293 other upstream 260319 14375633 ~ 14377651 (+)
AMCG00012294 NA other downstream 71277 14710244 ~ 14726783 (+)
AMCG00012300 NA other downstream 325077 14964044 ~ 15245994 (+)
G135649 NA other downstream 349331 14988298 ~ 15009803 (+)
G135670 NA other downstream 480758 15119725 ~ 15623881 (+)
AMCG00012309 NA other downstream 527577 15166544 ~ 15808521 (+)

Expression


Co-expression Network