AMCG00012289 (kctd13)


Basic Information

Item Value
gene id AMCG00012289
gene name kctd13
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14604865 ~ 14607059 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012289
CCTATTTGAGCCTTGCGCCCTGATGTCGGCCGAGGCTTCCTGCTGCCCGGGCCAGGGCGGGGGGGCGGCGTTGGCGTCAGACCTGCTTCCGGCGTcagccgggccgggccgggagGAGAAGGGGACGGGCCTGGCGGGCAGCAAGTACGTGAAGCTGAACGTGGGGGGCTCTCTGCACTACACCACCGTCCAGACCCTGAGCAAGAGCGACAGCCTGCTGAGGAGCATGTGCACTGGACACACCGAGGTCACCATCGACTCGGAGGgGTGGCTGGTGTTGGACCGCAGCGGACGGCACTTCGGCTCGGTTCTGAACTTTCTGCGGGACGGAGCGGTGCCACTTCCCGACTGCCCCCGAGAGCTGGAGGAGATCCTGAGCGAGGCGCGATACTACAGGCTGCAGGGCCTAGTGTCTCACTGCCTCACTGCCCTGCAgCCTGTGGTGAAGCTGCAACACAACCGAGGCAACAACAAATACTCCTACACCAGtaacTCGGACGACAACCTGCTGAAGAACATCGAGCTGTTCGACAAGCTGGGCCTGCGCTTCAACGGGCGGGTGCTGTTCGCGCGTGACGTCCTGGGGGACGAGATCTGCTGCTGGTCCTTCTACGGGGAGGGGCGCAAGATTGCCGAGGTGTGCTGCACCTCCATCGTCTACGCCACCGAGAAGAAGCAGACCAAGgtggagTTCCCGGAGGCTCGTATCTTCGAGGAGACCCTGAACATCCTGATCTACGAGAGCGGGCGTGGCCCCGGGGGCGTGTCCTCGGCCATGCTGGACTCGGGCGCCGGCTCGTCGCCGGGCGGCCTGCAGTCGGAGGAGGAAGGGGGCGGGGCCGGGGGCGGGGACCGGCGGGTGCGGCGGATCCACGTCCGCAGACACATCATGACGGACGAGAGAGGACACGGGCAGCAGACTGTGTATAAggac

Function

symbol description
kctd13 Predicted to contribute to ubiquitin-protein transferase activity. Involved in negative regulation of Rho protein signal transduction. Acts upstream of or within central nervous system development; neural precursor cell proliferation; and positive regulation of apoptotic process. Predicted to be located in nucleus. Predicted to be part of Cul3-RING ubiquitin ligase complex. Is expressed in brain; forebrain; hindbrain; midbrain; and retina. Orthologous to human KCTD13 (potassium channel tetramerization domain containing 13).

NR:

description
PREDICTED: BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 1

GO:

id name namespace
GO:0043065 positive regulation of apoptotic process biological_process
GO:0051260 protein homooligomerization biological_process
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0006811 ion transport biological_process
GO:0007420 brain development biological_process
GO:0061351 neural precursor cell proliferation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012289 True 934 mRNA 0.66 5 14604865 14607059

Neighbor

gene id symbol gene type direction distance location
AMCG00012288 NA coding downstream 11122 14585099 ~ 14593743 (-)
AMCG00012290 NA coding downstream 20842 14572012 ~ 14584023 (-)
AMCG00012280 taok2,LOC108278428,LOC106600755,LOC106583946 coding downstream 40960 14538791 ~ 14563905 (-)
AMCG00012282 NA coding downstream 77443 14523821 ~ 14527422 (-)
AMCG00012283 NA coding downstream 81407 14523105 ~ 14523458 (-)
AMCG00012286 NA coding upstream 59064 14666123 ~ 14668687 (-)
AMCG00012287 LOC106942595,LOC107568190 coding upstream 66274 14673333 ~ 14683800 (-)
AMCG00012296 LOC107582906 coding upstream 84355 14691414 ~ 14694151 (-)
AMCG00012297 NA coding upstream 91472 14698531 ~ 14700135 (-)
AMCG00012295 NA coding upstream 137256 14744315 ~ 14754009 (-)
G135802 NA non-coding downstream 162763 14440765 ~ 14442102 (-)
G135799 NA non-coding downstream 169137 14434975 ~ 14435728 (-)
G135551 NA non-coding downstream 236468 14368035 ~ 14368397 (-)
G135525 NA non-coding downstream 302496 14297735 ~ 14302369 (-)
G135481 NA non-coding downstream 402979 14200261 ~ 14201886 (-)
G135851 NA non-coding upstream 65952 14673011 ~ 14691919 (-)
G135859 NA non-coding upstream 149463 14756522 ~ 14757029 (-)
G135864 NA non-coding upstream 211796 14818855 ~ 14819936 (-)
G135913 NA non-coding upstream 897358 15504417 ~ 15507652 (-)
G135973 NA non-coding upstream 1203737 15810796 ~ 15811753 (-)
AMCG00012292 NA other downstream 2024 14596158 ~ 14602841 (-)
AMCG00012281 NA other downstream 70425 14531455 ~ 14534440 (-)
G135814 NA other downstream 81802 14519830 ~ 14523063 (-)
AMCG00012261 NA other downstream 510177 14090068 ~ 14094688 (-)
G135318 LOC100846954 other downstream 899253 13704846 ~ 13705612 (-)
AMCG00012291 NA other upstream 1751 14608810 ~ 14650327 (-)
G135856 NA other upstream 110413 14717472 ~ 14721170 (-)
G135857 NA other upstream 118451 14725510 ~ 14794158 (-)
G135957 NA other upstream 1099875 15706934 ~ 15732134 (-)
G135988 NA other upstream 1314545 15921604 ~ 15925153 (-)

Expression


Co-expression Network