AMCG00012294


Basic Information

Item Value
gene id AMCG00012294
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14710244 ~ 14726783 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012294
CCAAGCCCGATGACATTCTCATTGCCACCTACCCAAAAGCAGgcactACCTGGATGTCACACATGCTGGATCAGATCTATTTTGGGGAGAACCCTGAGACCCTGGCGTCCGAGCCTGTCTTTCACAGGGTGCCCTTCATGGAGATCTGTGCCCCTGGTATCATGACAGGTTGGTGCAGGTTGTGCaatgtgttgtgctgtgtcAGTCAATCTGTGTCTGTACTGCATAGCATGAGGGAAAACAACATGACCAACAGCTCCTCTGTGGACCCCAGAGTGCTGGACCAGAAGATCTCTCCATTCCTGAGGAAAGATGGTCTCCTGGTTTCTCGCTCCCTGCTCCACATCCTCCCTGGCCCCTGTGGCGTCCATCTCAATGCAGCTGTGTGCTTGGATGGCCCTTTGGTGTGGGGCGCCTCTGCCAATCACAGCTCTTCGCTGAAGTCCACAGCCACAGAAACAGGAAGTCATCATGCGCCAGACCCCCCTCCGTGGAGAGTGGGCTCGGCCCGGCTACAAAAAGCAGCGCGCGCACGCATTCGCTCTTTTCTGCTCGCGGAGACGGTGGGGCGCATGCGCAGGGGCCACAGCGTTGAGGCGCACTGCACGGCTGCACTCTTGTCCCGCCACCATGAGATTCTGCAGCCTGTGTCGGCGCCTTGGATTTCATGGTTCCTCTGTACTATGCCGGCCTCCGGGACTAATGAGGAGCAGCAGCCCAGGAAAACTAAACTTAAAGAGATGCGGAAAGGAACCTCCGTCAACCAGAGCTGCTCT
>TU170303
atactacctctctctctctgcctgtgtctgtgttagGACACTGATAGAGAGCTGGGCCGGCTGTGTGAGTTCCTGGGCGTGTCTCTGAGTGAGGAGTCCCGGCAGAGAGTGCTGAGAGCCGTCGGTTTCCAGAGCATGAGGGAAAACAACATGACCAACAGCTCCTCTGTGGACCCCAGAGTGCTGGACCAGAAGATCTCTCCATTCCTGAGGAAAGggatGGTTGCAGACTGGAAGAATCAATTCAGTGTTTCACAGAGTGAGGAGTTTGATGAAGACTACCAGAGGAAGATGAAGGACACCACACTGACCTTCAGGATGGAGATATAGACtttgtgtactgtactgtactgcattataccactatactgtactataaaCTGCATTGTACTACAGctgagataaagagagagagagagagagggtgtctCTGTGCTGTAATGTACTGCATTATAGTAATATACCGTACTAAAGTGCATTCACatagatttaatatttattttgaatatatggTATTATATCAACACTCATGTTTTTACAGCACATTACTGCACTTTCTAAGAAACCCATCACCTGATAAGGAAGCAGCATTTTGCAGCCTAATTCAAATTTTAtatcacagacagacagtagtTCTCCACTTTATATAGCTGTGGGCAACATCAAAAGTCAGCAAAGTATTGTGCTGAAATGAATACTGTCTGGCTGACTGTCAATTTAGGAATTGTTTGCACGATTAGAGAGTTTCCACATCAAAGTCGAGTTTGATAGCTTTGGAGTGAGACATATCGACGGCAGCTTGGTGGCCTTAGTGGGAATTGTTCAGACTTGTCTGCTGGTTTAAGATTGTTTTGAATTTGCCGCCTGGGTGTAGTTGCGTGGGACGGAAATGGCTTTTCACAGTTTGTGAAAATGGCTAAATCCCAATGCTAGTGTCATTCGCTAGTACCACAGGGTGGAATGGTGTCTCAGTGGATATGACACTTGTTTCTGCTCTGTCGGATAGTAGATTGGAGTCCTGGCCAGCCCTCGCTGTGTTGACCAATAGATACTCCATGCTGAACTAGGGCACGGTCATTGCTGCCGAGGGGAGTGGGTGTCAGATGTGTGTCAGATTCACAAAGCACTCTAATAGCTCTAAGAAAACAGTAGCTTATCAGATTTAAAACTAGTGTACAGGAATAaagagggatttttttttacagtcatGTAATAGTTACAGTAACTTAGTGGCCACTCAgctgcagatttattttatattcattatttacagAGTAGTTACACGTCCACTGACAGGTCCCCTGTATGCTCTgtaattttctctttcttgaTTTCATTCTTCCCTTTTTTGCCTGGCTTCCTTCCTCTCTTGTTGTCTTGCCAACTCTCTGTCTCCAGGAGTACTTGCGGAAATTAGAGAAAATGTTAAGAATGCATCCCATGGGGATGGGGGTGGGTAGTGGCTTAACTCGACTAAAACTGTACTTTTTATGGCACTTAGGAATcttagaaagagagagagagattgttctTGCCCTAGATTTCacaatcagtcaatc
>TU170413
agagagagtatagtAAGTTTTGCTCTGTTTGCTATTTCGTGTGGGACCAGCTATAACGCGCAggatggAGTTGGTTCGTCCAGAGCTGTTTGATTTTCGGGGGGTGGCCATGACTAACTATTTCACTGACAACTTTGACAATGTGGAGAAATTCTCAGCCAAGCCCGATGACATTCTCATTGCCACCTACCCAAAAGCAGgcactACCTGGATGTCACACATGCTGGATCAGATCTATTTTGGGGAGAACCCTGAGACCCTGGCGTCCGAGCCTGTCTTTCACAGGGTGCCCTTCATGGAGATCTGTGCCCCTGGTATCATGACAGgtgtggAGCTGATAGAGAACATGACCTCATCTCCTCGCCTGATNNNN

Function

GO:

id name namespace
GO:0008210 estrogen metabolic process biological_process
GO:0006805 xenobiotic metabolic process biological_process
GO:0006584 catecholamine metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004304 estrone sulfotransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012294 False 776 mRNA 0.57 7 14712176 14726783
TU170303 True 1559 lncRNA 0.43 2 14713780 14715881
TU170413 False 373 TUCP 0.49 4 14710244 14712641

Neighbor

gene id symbol gene type direction distance location
AMCG00012293 NA coding upstream 55129 14653439 ~ 14655115 (+)
AMCG00012285 LOC106579440,LOC106676660,LOC101486406,LOC100704476,LOC105890664,LOC108425940,LOC107578711 coding upstream 71277 14637970 ~ 14638967 (+)
AMCG00012284 asphd2,LOC105891569,LOC107687974,LOC106585499 coding upstream 82279 14624519 ~ 14627965 (+)
AMCG00012279 NA coding upstream 140052 14567367 ~ 14570192 (+)
AMCG00012275 NA coding upstream 258015 14445064 ~ 14452229 (+)
AMCG00012298 NA coding downstream 187801 14914584 ~ 14915573 (+)
AMCG00012305 NA coding downstream 669569 15396352 ~ 15397381 (+)
AMCG00012303 NA coding downstream 672650 15399433 ~ 15400438 (+)
AMCG00012306 NA coding downstream 703505 15430288 ~ 15430887 (+)
AMCG00012307 NA coding downstream 796729 15523512 ~ 15530379 (+)
G135625 NA non-coding upstream 3171 14663752 ~ 14707073 (+)
G135634 NA non-coding upstream 32744 14675852 ~ 14677500 (+)
G135595 NA non-coding upstream 99507 14570375 ~ 14610737 (+)
G135606 NA non-coding upstream 108661 14597130 ~ 14601583 (+)
G135594 NA non-coding upstream 133246 14563576 ~ 14576998 (+)
G135656 NA non-coding downstream 77697 14804480 ~ 14804953 (+)
G135657 NA non-coding downstream 84955 14811738 ~ 14818725 (+)
G135721 NA non-coding downstream 625102 15351885 ~ 15357725 (+)
G135666 NA non-coding downstream 1075646 15802429 ~ 15806653 (+)
G135768 NA non-coding downstream 1085130 15811913 ~ 15812121 (+)
G135573 NA other upstream 124474 14584124 ~ 14585770 (+)
G135566 NA other upstream 274516 14434965 ~ 14435728 (+)
AMCG00012267 NA other upstream 320559 14388038 ~ 14389685 (+)
G135544 NA other upstream 331549 14377672 ~ 14378695 (+)
G135541 adprh,LOC107387950,LOC101076629,LOC105024377,LOC103481379,LOC103381590,LOC107094293 other upstream 332593 14375633 ~ 14377651 (+)
AMCG00012300 NA other downstream 237261 14964044 ~ 15245994 (+)
G135649 NA other downstream 261515 14988298 ~ 15009803 (+)
G135670 NA other downstream 392942 15119725 ~ 15623881 (+)
AMCG00012309 NA other downstream 439761 15166544 ~ 15808521 (+)
AMCG00012302 NA other downstream 725286 15452069 ~ 15479549 (+)

Expression


Co-expression Network