AMCG00012296 (LOC107582906)


Basic Information

Item Value
gene id AMCG00012296
gene name LOC107582906
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14691414 ~ 14694151 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012296
ATGTTCATGTGCTACTGGCACAAGCTGCAGGTCAAAGGCCACGGCTCGGGCCCCGGCGCGCTCGCGGCCGCCCTGCGGAGCTACCTGCGCCGGGAGTTCCTCATGGTGCTGCACCACGTCGTCATGGTGACCGTCTGCTTCCCCGTCTCCGTGtACAAGCAGCAGCACACTCTCCTGCACAAGGTGAACGGAGCCCTGATGCTGGTGACTTTCTTCACCTGCCGCATCCTGCTCTTCCCCTACCTGTACTGGGCTTACGGGCGGTACGCCGGGCTGCCCCTGCACCGGGTGCCCCTGGCCGTCCCCTGGCACTGCAACCTTGGGGCCGCCCTCCTCATGGCCCCCCAGGTGTACTGGTTCACCCTCATCTGCCGGGGCGCCTTGCGCTTGTtcctctcccactcccactcccattCCCACGGCCACTCCCATGCCCACCCACACTGCCGCCACTCTCCCTCGcctccccccagccccccagccctCTCCTCACCGGCCaatccttcctcctcctcttcctcttcctcctcctcctcctctcccacctCCCCACACTGTCCGCACAGCGTCTGGGGCAAGGGGTGCGACCACATCAACGCCAACGGATATGGTGCTCTGGACAGAGACGCCCCCTcgcactga

Function

NR:

description
PREDICTED: protein FAM57B-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012296 True 642 mRNA 0.66 2 14691414 14694151

Neighbor

gene id symbol gene type direction distance location
AMCG00012287 LOC106942595,LOC107568190 coding downstream 7614 14673333 ~ 14683800 (-)
AMCG00012286 NA coding downstream 22727 14666123 ~ 14668687 (-)
AMCG00012289 kctd13 coding downstream 84355 14604865 ~ 14607059 (-)
AMCG00012288 NA coding downstream 97671 14585099 ~ 14593743 (-)
AMCG00012290 NA coding downstream 107391 14572012 ~ 14584023 (-)
AMCG00012297 NA coding upstream 4380 14698531 ~ 14700135 (-)
AMCG00012295 NA coding upstream 50164 14744315 ~ 14754009 (-)
AMCG00012299 NA coding upstream 269874 14964025 ~ 15050603 (-)
AMCG00012301 NA coding upstream 369978 15064129 ~ 15105136 (-)
AMCG00012304 NA coding upstream 680198 15374349 ~ 15378863 (-)
G135802 NA non-coding downstream 249312 14440765 ~ 14442102 (-)
G135799 NA non-coding downstream 255686 14434975 ~ 14435728 (-)
G135551 NA non-coding downstream 323017 14368035 ~ 14368397 (-)
G135525 NA non-coding downstream 389045 14297735 ~ 14302369 (-)
G135481 NA non-coding downstream 489528 14200261 ~ 14201886 (-)
G135859 NA non-coding upstream 62371 14756522 ~ 14757029 (-)
G135864 NA non-coding upstream 124704 14818855 ~ 14819936 (-)
G135913 NA non-coding upstream 810266 15504417 ~ 15507652 (-)
G135973 NA non-coding upstream 1116645 15810796 ~ 15811753 (-)
G135975 NA non-coding upstream 1118969 15813120 ~ 15816171 (-)
AMCG00012291 NA other downstream 41087 14608810 ~ 14650327 (-)
AMCG00012292 NA other downstream 88573 14596158 ~ 14602841 (-)
AMCG00012281 NA other downstream 156974 14531455 ~ 14534440 (-)
G135814 NA other downstream 168351 14519830 ~ 14523063 (-)
AMCG00012261 NA other downstream 596726 14090068 ~ 14094688 (-)
G135856 NA other upstream 23321 14717472 ~ 14721170 (-)
G135857 NA other upstream 31359 14725510 ~ 14794158 (-)
G135957 NA other upstream 1012783 15706934 ~ 15732134 (-)
G135988 NA other upstream 1227453 15921604 ~ 15925153 (-)
G136070 NA other upstream 1525975 16220126 ~ 16227243 (-)

Expression


Co-expression Network