AMCG00012302


Basic Information

Item Value
gene id AMCG00012302
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 15452069 ~ 15479549 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012302
aTGGAGTCGTGTCGTCCAGAGATGTTTGATTTCCGGGGGGTGTCCATGACTCCCTATTTCACTGACAACTATGACAATGTAGAGAAATTCTCAGCCAGACCAGACGACATTCTCATCGCCACCTACCCTAAAGCTGGCACTACCTGGGTGTCCCACTTGCTGGATCAGATCTATTTTGGAGACGACCCCAAGAGCCTGGCATCTCGCCCCGTCTATGAGAGGGAACCATTCCTGGAGATCTggatGGTGGGGGACTGGCAGAATCACTTCACTGTCTCACAGAGTGAGGAGTTTGATGAAGACTACCAGAGGAAGATGAAGGACACCACACTGACCTTCAGGATGGAGCTATAg
>TU170537
CCCAGACCCTCCAGCTCCTGCACTCCCCCCTCACAACAAACTGGGAAACATCAGGGCAGTCATTACTGCAGCCAGTGTGGGAAGACTTTCAGTAACTCTACAAACTTTAAAATTCACCAGCGtgttcacacaggagagaaacctttctgctgctcccagtgtgggaagagtttcaatAACCCAAATTGTCTTAAAATTCACGAGCGAATtcatacaggagagagaccgttcTGCTGCTCTGAGTGTGGGAAGTGCTTCATACATTCAGGAAACCTTAAAACTCACCAAAGggttcacacaggagagaaaccgttctgctgctcccagtgtgggaagggtttCACTCAGGCAGTTTCCTTGAGAAGACACGATGAGAGGAAGCACAAATGAGTAACGCACAGTTGACCActtcactgacacactgagaaacTAGCGTGATCCCTCCTCCCTATGgaTGGAGTCGTGTCGTCCAGAGATGTTTGATTTCCGGGGGGTGTCCATGACTCCCTATTTCACTGACAACTATGACAATGTAGAGAAATTCTCAGCCAGACCAGACGACATTCTCATCGCCACCTACCCTAAAGCTGGCACTACCTGGGTGTCCCACTTGCTGGATCAGATCTATTTTGGAGACGACCCCAAGAGCCTGGCATCTCGCCCCGTCTATGAGAGGGAACCATTCCTGGAGATCTGTGCCCACAATTTCATATCTGGTCAATGTGGGACACACAGTGGAGCTGTGGGAGGGTGCATAGTCTCTCTCTGAAGTATGTACAGCGGGTGGggcaaccctgttcctggagatcCGCAATGCTGCAGGTTTTACAGTTatctctaaatcaccaatccCTGATCATCTGCGCCAGCGTCGCGAACCAAAGTTGTCTCGGCCACAGGGGGCGATCAGGAGAACTTGGCAGGTGTATCACCCGTATGGAGCGGAGATTGTCTTGCGCccacacgatgtagtctgggggagtgtagtCCTCCCTGGttgttgatgtaggccaccactgacgtgttgtccgtccgaaccaggACGTGCCTGTCTGCCAGACCGTGGCGACAGTGGTGCAGCACCAGTCGCAcagcttgcagctcctgtacgttGATGTGTGTGGCTgctccacactccttggactcCCACCCCATTCCAGCGCCCCAGCCTGTTCCGGAggcatctgtggtgatgacttcccatcTGTGCGGGCATCCGAGGGGGGAGCCGAGGTGCAGCTTGTTCcgatttctccaccaggacagtgcctgccagcatgttgaggtcacggtcagtgggtggtgtttgtgtctcgctgggtgCATCATGTGGGTGTTTACTCAGCGTTGTAACGAGCGCATGTGCATAAGGCCCAGGGGGAGAATATTCGAGGTGGCcaccatcagccccaacagtttaTGGAATTTGACCAGTTGGAGAGTCGATGCTCTTCTAAATGATGCCAGGCATTTCTCCAACAACTCGATTCTGTCTCTGAacaggtaggcaagcatgtTCAGAGAGTCTAGCCTCATCCCCAAGAAGTCCACAGTCTGTGCGAGTTCGAGGAAGCTTTTCTCTATGAGAACTGCGAGACACAGTGCAGTCACATGCCGTATGACCTTCCTCCGCCTGAAGACTGGAGTCTgtgcacaccagccagtcatccaggtagttcatgatccttatcccctttgtcctgaggggggggccaaggctgcgtccatgcacttcgAAAATGTGTGGGGAGCCAGAGAAAGGCCGAACGGCAGCACAACTTGTACGCCTGGCGCTGGAAGGTGAAGTGCAGGTATTTCCTGTGTGCcgggaggatggggacgtggaagtaggtgtccctgaggtctattgacgTGAACCAGTCGCCTGGCCAGACAGACTGAAGGATACACTGCACCGTCAACATGCGGAACGgtgttttcttcagaaacatgttgaggcccctcagattGAGAATGGTCCTGAAGCctccgtccttctttggcaccaggaagtaccccgagTAGAAGCCTGCTCGAGCCTgcttgccattggtcgagtTCAGTCGGTCGGGCACCATGGAATATCCACCAACTCAGCTGCACGTCTCATCAGAGCCCTGAATTCTATGCTTGGGGCTGGGAAGTGCTCCAACACCGAACTCGCCACCTCGGTCACCTCAATAAAAGATGGAGGGTCTGATATGTCTGAGCGCGATGCCACATGGGACACAGCGTTTCTTccggtggtggtggtagtggtagCTGTAgctgaggagggaggggggcgCCCTCTTCTGGTGCGAGATGCGCCCACATGGTGTTTAGCATACACTGCTTGGAGGCCAGCGTATTCTTAAACAGTAAAGCAGCAGCAATGTCGTCCCCTTCCTGTCTCCTGCGGCATGGAGGAGTCCGCGGAGTGGAGCGTCTGGACGATCGAGAGCAGGATCGTCTGGCTCTTGGGGACCTCCATCTGGGGGAGCGTGCTCTCCTCCCCGGAAGTGCGTCTGCGAGGAAGCGGAGAGGGGGAAACAGACTGCACCCTCGCTGGTGAAGTCCTGGGGGAAGAGGACCGCTGTCCGTTTTGCCGTCGCGAGGGGACCCTCGTGTTGCTGGGCACTGAGAGGGTATGGACAGGCAGTCTCCAGTACCTGTCATTGTCTGTGTTAAaactctctccgtctctctttctcactgcCTCTCAGGGGTGGAGCTGATAGACAACATGACCTCGTCTCCTCGCCTGATCAAGACTCACCTACCGTACCAGTTGGTGCCAAAGGGCTTCTATTAACAAAACTGCAAGggatGGTGGGGGACTGGCAGAATCACTTCACTGTCTCACAGAGTGAGGAGTTTGATGAAGACTACCAGAGGAAGATGAAGGACACCACACTGACCTTCAGGATGGAGCTATAgatagagattgtgtgtgtacagaactgtactgcattatattatccctgagagagagactgtcTATATCaagggttcccaaagtgcggcccaggggccaaatgcggcccttgAGAATGTTTGGTGCacccccccaaagccaaccttcaaccaccccttttctgaattgttactatatttttacactttcatgcaatttgtaacagaaaatattcTATGTAACTTGGgggataataaataataaaacaattaaagttagggaacatttatgaactgacatgtataggaaataaaaaagtatgatttgggacatattttgttttcatcggtGGTTCATTATCTACTGtagcccccccatcccatgcaacctctggaaattggccctccatcaccagacactGGGAACACCTGGTCTATATGTACTCTGCTGAAGTATAATAAAGAGGTTGGGGGGGAACAACAGGAGAGAGTGGAACACTCTGTCTGTTGTATGTGGGTTTTGAGAGTTTTCCACTGTCCACGTTAAGGTGCACCTCTGCCTGTCCATTAGCGTAATTTCCATGGTTGCTCAGGTGCACCTGCACCTGTGcccaaactagtttcaggaggtACAGTTTCATATATCGCACCGGCCGAGTCCCAAACTGCTCTAGTGTCAATTACGTAGCCAGATGCAACatcactgcattttgaaattgtaactacaataaTGGCAGCCATTATtgatgtgtgtttaccttgggaagacTATGAAATTAGAGCACTTATTAATGTATGGTCTGGATTTGGTGTTTCACATTCACTTCCTGGGGCAGTTGTACCTAacgaaaatacaatataaatgtggGCATCCATGTTTAGGTGTACAGGTACGGCTTGGAGATACCGAGGTACACCGATGGGTGGACAGTAGATCATTTCTATGTTTAGTATCACAATACTCAATACTGAAATGATACTCTATACTGGAAACAATACTCTAACAAAACgaggacaaaaatatataccgtaaaacttccaatactcgcTGGGTCTATcgaatatatatactgtacatccAGTACATGgaatcttagactgctaacagaattaccagtatcttgttttcaatccagtgtatagttcaccatacattgaatgtaatttgtttgcatcctttgaaagcaatttaataacaaataataatacatacattaaaataaaagcctggcctattagtacttctacaatgaagccaTGTTTCCAGGCtattcttaccctgcatgagtctgcgatgtctttttatttatgaatgtttaatacaaatgctggtctccaattgacgccagggcttcttgcagttatttggaataaatgccaggggcgtttaattgaagttttacggtatggttgggagggttacttttaaaaagtattccgttacagaatattgattaccttgttttgaaaataatctgtaacctaatccaatacattactccaagtcagtaacgtaatcagaatagttgtagaatactttttttcttaaaaaacgAAGGCAGctgagttcaagaagtgaaacaaaatgtactacacatatctaatatggatgacggatttaaattgtttatttgaatccacagtacaaacaattaaaatggtaagatttgcatcagtttaattatttatttatactttgcattttgtagtagtggatgcatttttaaacaagtgaaactgcattttgatacccTTTAAATTTTTAGAAActgacataaatcagacatcaaTAATGAGTTCTTGTCAAGGTGTATTCTGTTCACCGTCATTTGTGATGCAGGCGTTGTTTTAATAGGTACTTAAATAGGTACCTTGTCTGTAAGTTGTAAGTACgtttaatgcttataaagactacagtttattttgttctgtctgtgaagatacactgatcaagcaacttgctataataaaggggATATAAATGCCGTATATTGTTCTATCCATGAGAAACGCAGTCAACGGTTTCAATGCACCAGCACCGGAAACACagattgaaatcaatgcaattagggcattatttttaagtatcaatgAGCtaggaatgttatgcatcttgtttcccTAACACATCCTGTTAAAGAGCATGCCATGCCACGTAGGACTAGTTCATTCAGTCTGTGcgatttgtttggttttagactataaacatgttttatgttgttattttggtattatattaagtcttTAATTGTTAAtgtcacagaaccagctaggattcacaggaactatttgtaatgtacgtGGATGTATCTTAAATTGAGATAACTTGAATAACTtattacttaaaatacaaactatcgATAACGTGTTTGGTTATACTATGCCTGTGCtgccgttttgcttattattatgcttttatacaaatatgtaattattaaatcgtaattattattattttttattttttatgctaaGCACAATTGTATATTGGCTgcacaaattataaaaaaaacagacagtaCATTGTCCTATAGGCACATCGtgtattgtactttaatatactttaacaattgcctgtacttccaCAAGTGAAATCCCTGCtaaaacacaatgttgccacaatgttgtaggACTGTGTAGGTCTGTTGTAGGACTACTAGCTGGGATGCTGACTGCAGCTCCATTCTGCCTGCCTGTAGAATGGCGCTGAATCAGCCGCTCTTTGGCTAgatcattaataaaaacaattttgcaAAAATACTATATGTGGGCCCCTTCAGAttcccttacacttgtacaaTTTTGTGTATATGatgtataagtaatcagtaatgTCCTACTCTTTAAAAAAGAGTAATCAGAATACTCAGTCTGACAGGAGTAACTGTAACCGGAATTCAAGTATCAAAATTCCGTAATCTGATTACATAACGCCACTACTTGTATTCtgttaccccccccccccaaacactgAACAATATGCCGATAACTGGGTAGAAAAATCGAActataaaactgtattaaatcTAGATCTAGAAGAATTAAATAGCCACAAACATAattcaaacaatatttttttacgAAGACCTAGCGAGAGAAGAACCAGATTATGAATATCTTCACTGAGGTTTACAtcgacacacacactatatatacagtgggtaCCCCTGACTCCAAAATATAAGCATCTGTTTTACAAGAAAttaagttaaaagaaaaacaggtttcAAAATTCTGTTTTTTATCATGCCCCAGGTCATAAGGGTCAACCTCCAGTTACTATCTACATTATACATACTTTTTTGTTGTATCCCACAGAAGACATGAGTCAGCCTTTATCTGGCACCTTCTGCTCAATAATACATTCAGTTTAGATACATTTCTGTTGATTCCTACATTAATGGTACTGCAGTTTAATGTGATGAACTTATTGTATCATTTATTAGAATTACTATTTAACACCCCTGCCCCATCTCGGCTTAATCAGCTGGAAGATGTACAGTTGTCTCTATACTAGGGGTTCTTAACCAGGGGGGTGAGAGacggcttatttatttataaacggGTCCAGTCTGCTGCCCACTACAATGAAAAGCTACTTAGAGCACATATCTTCAGCCTTTAACGtatctgtgtgttatttaatgaGAGTGAAGAGAATGTATTAActttataatttcattttcttctgtaattCCTCTATTATATGAACCCTCTCGTGAGATTTAAGGTTTCCTGCATGACCGAATCTCTTGCCACAGTGGGAACAGCTGTGTGGTTTCTCTCCAGTATGAGTGCGCTTGTGATAAATAAGGCTGGTTGCCtgactgaagctcttcccacactgggagcaggcGTACggcttctctcctgtgtgaatgcgctggtgagatttaaggTGGCCCGCACGcctgaagctcttcccacactgggcgcagctgtgctgtctctctcctgtgtgaatgcgctcgTGTGATCTTAGGTGGCCTGCATGAATGAAGCTCTTTCCACACTGGGAGCAACAGAATGGCTTCTCTCCGGTGTGAATGCGCTCATGATAATTAAGGCTTGCTGACtgactgaagctcttcccacactggttgcagcagtatggtttctctcctgtatgAACGCGCTCATGTGATTTAAGGCTTACTGCATGACTGAAGCGCTTTTCACAGTGGGAGCAAGAGAATggcttctctcctgtgtgaatacGCTGGTGAGATTTAAGATTTGTTGCCTGACTGAAGGTCTTTCCACACTGGGTGCAACTGTATGGCTTCTCTCCGGTGTGTACACGCTGGTGAGACTTAAGGCTTACTCCATTACTGAAACGCTTCCCACACTGTGAGCAGGagtacggtttctctcctgtgtgaaccCGCTGGTGAGACTTAAGGTTTACTCCATTcttgaagctcttcccacactgggagcagcaaTACGTTTTCTTTCCTCTGCGAGTGCATGAGCGAGAGGGTCTGGGGGACAGCGGTCTGCTCTCAGTCCTCTTTGAACTGTCACTCCCTCCACTGAGACCCATTGTCTGGTTCACCTCTTCTGTTCCACATAGTTGATTTACAGGGAGGTCAGGTTCCAGTTTGCAAAGGCTTGTAATATTCTCCAGTCTAAGATTACCAAGTCCATCTTTCAAAGCAGTATGCATTCCTGACTCCAGTTCAACGTCCTCTGTTTTAATCTGATCCGGCAACATATTGTGTTCACACTGTGTTCCAGTAGAGCCTAGTTCAAcaccagctgcactgggtccacactcagatCCCAGTCCTCCAAGTCCCAGTGTTGACCCCTTAGTCTGTGGCTCTGCCCTGTGGCCAGACTCCAGTCCCCtgagctcctcctcactctgtctgctcctgtgctgctcagTTAGGCCCCGTTCGTCTTCAGTAGCTGTGGGCTCTGTATCCCGCCTCAGACTGAAACCCCACTCCTGCTGCTCAATGGGGGCCCTTTCCTCAGAGACTTGGAGAGCGCTGGCCTCTATTGCTCCTGTGGGAGAGACAAGAAATAAGAAcagcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012302 False 354 mRNA 0.51 3 15471051 15474526
TU170537 True 7942 TUCP 0.45 5 15452069 15479549

Neighbor

gene id symbol gene type direction distance location
AMCG00012306 NA coding upstream 21182 15430288 ~ 15430887 (+)
AMCG00012303 NA coding upstream 51631 15399433 ~ 15400438 (+)
AMCG00012305 NA coding upstream 54688 15396352 ~ 15397381 (+)
AMCG00012298 NA coding upstream 536496 14914584 ~ 14915573 (+)
AMCG00012293 NA coding upstream 796954 14653439 ~ 14655115 (+)
AMCG00012307 NA coding downstream 43963 15523512 ~ 15530379 (+)
AMCG00012310 NA coding downstream 284480 15764029 ~ 15815714 (+)
AMCG00012313 NA coding downstream 409149 15888698 ~ 15896509 (+)
AMCG00012316 NA coding downstream 462083 15941632 ~ 15984389 (+)
AMCG00012317 NA coding downstream 507510 15987059 ~ 16057103 (+)
G135721 NA non-coding upstream 94344 15351885 ~ 15357725 (+)
G135657 NA non-coding upstream 633344 14811738 ~ 14818725 (+)
G135656 NA non-coding upstream 647116 14804480 ~ 14804953 (+)
G135625 NA non-coding upstream 744996 14663752 ~ 14707073 (+)
G135634 NA non-coding upstream 774569 14675852 ~ 14677500 (+)
G135666 NA non-coding downstream 322880 15802429 ~ 15806653 (+)
G135768 NA non-coding downstream 332364 15811913 ~ 15812121 (+)
G135779 NA non-coding downstream 399585 15879134 ~ 15900621 (+)
G136025 NA non-coding downstream 623345 16102894 ~ 16103304 (+)
G136040 NA non-coding downstream 692190 16171739 ~ 16172095 (+)
AMCG00012300 NA other upstream 206075 14964044 ~ 15245994 (+)
G135649 NA other upstream 442266 14988298 ~ 15009803 (+)
AMCG00012294 NA other upstream 725286 14710244 ~ 14726783 (+)
G135573 NA other upstream 866299 14584124 ~ 14585770 (+)
G135566 NA other upstream 1016341 14434965 ~ 14435728 (+)
G135744 NA other downstream 80355 15559904 ~ 15563836 (+)
AMCG00012308 NA other downstream 204929 15684478 ~ 15689338 (+)
G135781 NA other downstream 431699 15911248 ~ 15930848 (+)
AMCG00012324 NA other downstream 625356 16104905 ~ 16142641 (+)
AMCG00012318 ypela,ypel3,LOC103040367,LOC108411043,LOC103393221,LOC106600728,LOC105012807,LOC104942727 other downstream 696847 16176396 ~ 16183090 (+)

Expression


Co-expression Network