AMCG00012308


Basic Information

Item Value
gene id AMCG00012308
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 15684478 ~ 15689338 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012308
CAGGAAGTGAGGCAGACAGAAAAGAAGCTGCCCTGCACAGATCTCCCTTATGAAAAAGAAGTTTAGTGATTGGAAACCAAGATTTGAAATGGCCACAATTGCAAGAACATTTGCAGTCCCTTTCACAATGGCTGGGGACACGCTGAGaaacaggcacacagacagaccgaGACTCAAGCGGAGAGGCAGTCTGTATTGGTCACGACCCGATTTCTTGCAGTGCACCTGCCAAAGCTCAGATGAGATCAGCgggttctCTGTGGGCCAGAAGGATCCCAGTGAGACTGTTCTGTAGCTGACTCCTGTGTTATGCATGGTGTGGGACTAAGCTTTCATTTAGCTCAGTTGTGTTCCACACTGAAGGAGGTTGAGATCCTGATAAAGCAGAGACCAGTGAGACCAATGCTGCTTTAGCTAATGTATTTATAGCCCTTGTGGATTCAATGTTATAAAATCACGTAATTTTAAAGTCCTTGTAGTACAGTACGCTCACACAGCCTAGTAAATCTAATCCCTGTGCAGTAGAATCCAGTATAGTACACTCATACAGCCCAGTCAGTATAGTCCCTTTGCTGTACATTAACAAGACACTCTCATAATCTACCCCAAATAATCCCTGTGCAGTAGAATACTTAATTAGTAGAATAGTTGGAAATTCGAATTTTTAAAAGGATCACAGGAAATACTAGGCCAGTAGTCCACACGGATCTTTAGCAGCAATGGTGTCTTAAGTTTCTGTCTTTATCAGGCTCTGATGGcaaatgttttgacatttcaCATGTGTGAGAGTCAATGTGCTCTACACTAGAACTAACACTAGTCTCTTTTAGAGTATGTTAACTGTTAGAGACTAACAGTAGGCAATGACTATCAGAATACCAGAACAGTTAAAAGGTACACTATAATaccaaaagtattgggacaTTCCTCACTCCTCCATTAATTGTTTGTGGTAAACTGTGTTGTGTACAGGGGGACCATGAGCAGCCAGTGAAGACTGGACATATTCAAGTTTCCAGTTGGCTTTAATTGATGAGGGCCCCCTATACATCTACCAACACAGCATAACACAACacactatattaacacaataCAATAGAGAACCCTTTCACAAATATGGTAGCAAACACAGTAGTTATCTTTCGAGTCGAGAATGCTACCCAATGGGGAGGGTCTTAAACCTGTTACCATGGAACCTCacattgtctaacaaagctggGTATTGGCCGCAGTACTTGCAGCTCCATACAAGCACCCCCCTCCTGTTTcctgcatatatatttaaggtaCTTTTTCAGATAAGTTgcattcactttcattttcaagaGAATAGGATCTGAGCCATACCACCGACCTGTTATCATTGATATATGGCTAAACCAGCTGCAGTCCAGAATTCCTTTTTTGTCCCTAAACTTTTGGTATTGTAGTGTGAATATGTACATaagttgaatgtatttatgactgttcaaattggtttctgttttatgttCGTACTATGATACTGGTCACACTGTGTGGCATTTTCAATTATACAGTCTGTCATAACAGTTAATCCACTTTGCTGCTTCCAAGAGTACAATGCACATAATTAATATGGTATCATTTAGATAAATCGTACTAGTAGCTGTCTATTTACACAGtaactcataagaacagtgtaattatgcattattacaatgtaggCCTACTTAACgtgtaataatgattaacagtatatgCAAGTACACAATTATCTGTTAAGGATGCCCATCAGGAGTCTAACAATGGCTATAGCTATACCTTTGCAGTAGCTTTGGAGTAGCTATACCGGGCATgacccagtttttttttttacactttttgtaataaagcataattacactgcttatgagtaactacaaatgtagtATATACTGCAAATACACTAAGTAGGGAGACACATTGCAAAGTGTTACCAGTAATGATGTCACTTCTTGTAGAAGTttcac
>TU170557
CTGCCCAGCGAGAGCAAAAAGGAGAAAACCAGGAAGTGAGGCAGACAGAAAAGAAGCTGCCCTGCACAGATCTCCCTTATGAAAAAGAAGTTTAGTGATTGGAAACCAAGATTTGAAATGGCCACAATTGCAAGAACATTTGCAGTCCCTTTCACAATGGCTGGGGACACGCTGAGaaacaggcacacagacagaccgaGACTCAAGCGGAGAGGCAGTCTGTATTGGTCACGACCCGATTTCTTGCAGTGCACCTGCCAAAGCTCAGATGAGATCAGCgggttctCTGTGGGCCAGAAGGATCCCAGTGAGACTGTTCTGTAGCTGACTCCTGTGTTATGCATGGTGTGGGACTAAGCTTTCATTTAGCTCAGTTGTGTTCCACACTGAAGGAGGTTGAGATCCTGATAAAGCAGAGACCAGTGAGACCAATGCTGCTTTAGCTAATGTATTTATAGCCCTTGTGGATTCAATGTTATAAAATCACGTAATTTTAAAGTCCTTGTAGTACAGTACGCTCACACAGCCTAGTAAATCTAATCCCTGTGCAGTAGAATCCAGTATAGTACACTCATACAGCCCAGTCAGTATAGTCCCTTTGCTGTACATTAACAAGACACTCTCATAATCTACCCCAAATAATCCCTGTGCAGTAGAATACTTAATTAGTAGAATAGTTGGAAATTCGAATTTTTAAAAGGATCACAGGAAATACTAGGCCAGTAGTCCACACGGATCTTTAGCAGCAATGGTGTCTTAAGTTTCTGTCTTTATCAGGCTCTGATGGcaaatgttttgacatttcaCATGTGTGAGAGTCAATGTGCTCTACACTAGAACTAACACTAGTCTCTTTTAGAGTATGTTAACTGTTAGAGACTAACAGTAGGCAATGACTATCAGAATACCAGAACAGTTAAAAGGTACACTATAATaccaaaagtattgggacaTTCCTCACTCCTCCATTAATTGTTTGTGGTAAACTGTGTTGTGTACAGGGGGACCATGAGCAGCCAGTGAAGACTGGACATATTCAAGTTTCCAGTTGGCTTTAATTGATGAGGGCCCCCTATACATCTACCAACACAGCATAACACAACacactatattaacacaataCAATAGAGAACCCTTTCACAAATATGGTAGCAAACACAGTAGTTATCTTTCGAGTCGAGAATGCTACCCAATGGGGAGGGTCTTAAACCTGTTACCATGGAACCTCacattgtctaacaaagctggGTATTGGCCGCAGTACTTGCAGCTCCATACAAGCACCCCCCTCCTGTTTcctgcatatatatttaaggtaCTTTTTCAGATAAGTTgcattcactttcattttcaagaGAATAGGATCTGAGCCATACCACCGACCTGTTATCATTGATATATGGCTAAACCAGCTGCAGTCCAGAATTCCTTTTTTGTCCCTAAACTTTTGGTATTGTAGTGTGAATATGTACATaagttgaatgtatttatgactgttcaaattggtttctgttttatgttCGTACTATGATACTGGTCACACTGTGTGGCATTTTCAATTATACAGTCTGTCATAACAGTTAATCCACTTTGCTGCTTCCAAGAGTACAATGCACATAATTAATATGGTATCATTTAGATAAATCGTACTAGTAGCTGTCTATTTACACAGtaactcataagaacagtgtaattatgcattattacaatgtaggCCTACTTAACgtgtaataatgattaacagtatatgCAAGTACACAATTATCTGTTAAGGATGCCCATCAGGAGTCTAACAATGGCTATAGCTATACCTTTGCAGTAGCTTTGGAGTAGCTATACCGGGCATgacccagtttttttttttacactttttgtaataaagcataattacactgcttatgagtaactacaaatgtagtATATACTGCAAATACACTAAGTAGGGAGACACATTGCAAAGTGTTACCAGTAATGATGTCACTTCTTGTAGAAGTttcaccaaacgagcatgatgggtttatttatataaactttcttaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012308 False 1970 mRNA 0.40 5 15684507 15689290
TU170557 True 2047 lncRNA 0.39 5 15684478 15689338

Neighbor

gene id symbol gene type direction distance location
AMCG00012307 NA coding upstream 154099 15523512 ~ 15530379 (+)
AMCG00012306 NA coding upstream 253591 15430288 ~ 15430887 (+)
AMCG00012303 NA coding upstream 284040 15399433 ~ 15400438 (+)
AMCG00012305 NA coding upstream 287097 15396352 ~ 15397381 (+)
AMCG00012298 NA coding upstream 768905 14914584 ~ 14915573 (+)
AMCG00012310 NA coding downstream 74691 15764029 ~ 15815714 (+)
AMCG00012313 NA coding downstream 199360 15888698 ~ 15896509 (+)
AMCG00012316 NA coding downstream 252294 15941632 ~ 15984389 (+)
AMCG00012317 NA coding downstream 297721 15987059 ~ 16057103 (+)
AMCG00012321 NA coding downstream 368515 16057853 ~ 16100861 (+)
G135721 NA non-coding upstream 326753 15351885 ~ 15357725 (+)
G135657 NA non-coding upstream 865753 14811738 ~ 14818725 (+)
G135656 NA non-coding upstream 879525 14804480 ~ 14804953 (+)
G135625 NA non-coding upstream 977405 14663752 ~ 14707073 (+)
G135666 NA non-coding downstream 113091 15802429 ~ 15806653 (+)
G135768 NA non-coding downstream 122575 15811913 ~ 15812121 (+)
G135779 NA non-coding downstream 189796 15879134 ~ 15900621 (+)
G136025 NA non-coding downstream 413556 16102894 ~ 16103304 (+)
G136040 NA non-coding downstream 482401 16171739 ~ 16172095 (+)
G135670 NA other upstream 60597 15119725 ~ 15623881 (+)
G135744 NA other upstream 120642 15559904 ~ 15563836 (+)
AMCG00012302 NA other upstream 204929 15452069 ~ 15479549 (+)
AMCG00012300 NA other upstream 438484 14964044 ~ 15245994 (+)
G135649 NA other upstream 674675 14988298 ~ 15009803 (+)
G135781 NA other downstream 221910 15911248 ~ 15930848 (+)
AMCG00012324 NA other downstream 415567 16104905 ~ 16142641 (+)
AMCG00012318 ypela,ypel3,LOC103040367,LOC108411043,LOC103393221,LOC106600728,LOC105012807,LOC104942727 other downstream 487058 16176396 ~ 16183090 (+)
G136076 NA other downstream 560910 16250248 ~ 16259332 (+)
AMCG00012338 ppp4cb,ppp4c,LOC107571759,LOC107590569,LOC107755586,LOC107729194,LOC107567834,LOC107690278 other downstream 704361 16393699 ~ 16432813 (+)

Expression


Co-expression Network