AMCG00012309


Basic Information

Item Value
gene id AMCG00012309
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 15166544 ~ 15808521 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012309
GTCTGATGGCAGTATAGcagacatgaagaaagacaaCAGTTGTGAAAATTTGGAACTAATGTCAGTCAATTCTCCATCGACAGACAAACAACCTGAAGCCAGGATATCCCAGCAAAGAAACACAGAAGGATATCAGAAGAGCAGTGATGGGAGAGTGTGTTGGTggattttactattattttcctGTGCAGTCTGCAGTCTTATCTCTGGACTGGCTGTGTACTttttccttgGTTCAGTAGACGAGCCAATGGTGTCAGCAGTGCAGAGTGATCTGGAGAAGCTGCAGGAGAACAACACCGCTCCGATAACTGAATTGCAGAGAAAGCAGGAGACCCTTCAGACAGAGAATTCCAACCTTCTGCAAGAGCATTCAGACTTACAGAGAAACCACAAGACTATGACAGACAGTCATCTCCTCACAGAGAGATCCAACACTGAACTacagagaaaacaggagacccTTCAGACAAAGCATTCCAGTCTTCTGCAGGAGCATTCAGACTTACAGAGAAACTACAACAATATGACAGAGAGTCGTCTCCTCACAGAGAGATCCAACACTGAACTGAAGAAGCAACTGCAGAACAGGGAGAATGAAAACTCCAATCTACAGGGCAGATACAACAATTTGAAGTCCAGCTGTGATGAACTGAGGAAGGAACTGCAGAACAAGGAGAACAAAAACTCCAATCTACAGAGCAGATACAGCAGTTTAAAGGCCAGCTGTGATGAACTGAGGAAGCAACTGCAGAACAAGGAGAATGAAAACTCCAATCTACAGAGCAGATACAACAGTTTGAAGTCCAGCTGTGATGACCTgcagagaaaacaggagacccTTCAGACAGAACATTTAGGTCTTCTGCAAGAGCATTCAGACTTACTGAGAAACCACAACAATATGACAGAGAGTCGTCTACTCACAGAGAGATCCTACACTGAACTGAGGAAGCAACTGCAGAACAAGGAGAATGAAATCTACAATCTACAAAGCAGATACACAAGTTTGAAGGCCAGCTGTGATGTCAAAGTCGTATTCTCTGAATTATCAAGAGAAGAAGGAGTTGTCCTTAAACAAGTGTGGAAGTGGATTCGTGATGCAGCAGTGGATGTGACTCTGGACCCCAATACAGCGAATCCCTATCTCATCTTGTCTGCGGACGGGAAACAAGTGAGAAATGGAGACAGACGGCAGGCTCTCCCTGACAATCCACAGAGATTTGATCGCGTAGTCAGTGTCCTGGCAAAGGAGGGTTTCAGTTCAGGGAGACACTACTGGGAGGTGCAGGTGAGGGGGAAGACTGATTGGACTTTAGGAGTTGCCAAAGAGTCTGTCAACAGGAAGGGGAAGATTACAGTGAGACCTGATATGGGTTACTGGACTTTGTGGCTGAGGAATAGGAATAAGTTTGAGGCTATTGTTAACTCTACTGTCTCCCTGCCCCTGCACCTGAAACCCGAGAAGCTGGGTGTCTATGTGGATTATGAGGGGGGGCAGGTCTCCTTTTACAATGTGGAGGCCAGGTCTCATATCTTCACTTTCAATGACACCTTCACTGAGAAACTCTATCCATACTTCAGCCCTCATCTCCACCTAGGAAGTAAAAACTCAGCCCCACTGATCATCTCCCCCATCAGTCGCACAGACTGATCAAGACACATGATCTAAGGGAGGGGGTGATTAAGATAAGTAATATAGCGCAATAATTGTCTTTGTGAACTGAAATGACCTGCCAACAAGGTCTACAGTCTGAAATCTCCAGCAGTCAGTTCAGGCAGTCCAGCAGATCTTAAGAATCCTTATTCAGCCactaacacaacacaaatactTTCTGATTATTAACCCTCTGACAGTGAAGGACAGGGAAGTGGGTTGTCATATAAAGCTTATCTGCAGAAtgaccaagaaaaacaaaaaataattaatagttAAAATGAAAGATTTCATTCCTGAAACATATCAACACAAGcattttataatatacatatatgattttccttaaatatatatgtatatatatctataatcCTTCAATCGCATTTCCATTGGTGATGTTCAGAGTTAATCTCTCCTCTCTTGTGCTGACTTCAATACCTTTCAGGTTTCTTTATCTCTGATTCAGATGAGAGGCTAATTTCTTTGAAtcctgtttgtctgtctctctgtgtgggtGGATGACATTCCCAAAACAGTTGCAtcttttaaatgagattttactatattatactatactgtacttttCTGTAGTATACTGCACTATACAAAACTAGGTGTAACAATAACTAGATCTGTAATGTATTATACTATACTGATTATGCCATACTAATCTTAACTCGGTCTGCataattaattctgaaaaacattttgaaatacaataaatgttaaAGTGGCAATtaatgtactgtttatttttattttttcttagctATATACTTATAAAAGATTCCTCTATGCTGGCCTGTAACAAAACCATTCAATTGAGTAAAGATTAAGATGATTGA
>TU170448
AGGACCTCAGAAGAGCAGTGATGGGAGAGTGTCTCTGTACAAGAGGATCTCACTGctccttgtctgtgtgtggatccTCACTGTCATCTCTGGACTGGCTGTGTACTCTTCCCTTGATTCAGTAGACGAGCAAACTTTCCTCAGGGTGAGAGGACGGCACAGTGAGCAGGAGAACAGCAACACTGAGATAACTGAACTGAGGAAGCAACTGCAGAACAAGGAGAATGAAAACTCCAATCTACAGAGCAGATACAACAGTTTGAAGTCCAGCTGTGATGAACTgcagagagaacaggagacCCTTGAGACAAACCATTCCAACCTTCTGCAAGAGCATTCAGACTTACTGAGAAACCACAAGACTATGACAGAATCCAACACTAGTGAATATTCAGATTGCAGTGCCTACTTCATTACAATCCAGTTGTCCTctacacatagagacacacataAACAACTGCAGACTGCAGTGAGTGATGTCTGCTTGTATTTTGGGATTGTCTTCTAAAATGCTAGATgtactatatacacacacatatatacagtggcctccacatttatttatatcctcaacaaattgaattaattgtaattttgcaatttgtatttcgaaaataacagaaatattcataCTTACAACACTACACATAGCAAcatcaaatgttttatgaataaagGCATGTTTCT

Function

GO: NA

KEGG:

id description
K06712 BTN, CD277; butyrophilin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012309 True 2505 mRNA 0.41 14 15643156 15679263
TU170448 False 687 lncRNA 0.41 4 15166544 15808521

Neighbor

gene id symbol gene type direction distance location
AMCG00012298 NA coding upstream 250971 14914584 ~ 14915573 (+)
AMCG00012293 NA coding upstream 511429 14653439 ~ 14655115 (+)
AMCG00012285 LOC106579440,LOC106676660,LOC101486406,LOC100704476,LOC105890664,LOC108425940,LOC107578711 coding upstream 527577 14637970 ~ 14638967 (+)
AMCG00012284 asphd2,LOC105891569,LOC107687974,LOC106585499 coding upstream 538579 14624519 ~ 14627965 (+)
AMCG00012279 NA coding upstream 596352 14567367 ~ 14570192 (+)
AMCG00012313 NA coding downstream 80177 15888698 ~ 15896509 (+)
AMCG00012316 NA coding downstream 133111 15941632 ~ 15984389 (+)
AMCG00012317 NA coding downstream 178538 15987059 ~ 16057103 (+)
AMCG00012321 NA coding downstream 249332 16057853 ~ 16100861 (+)
AMCG00012320 LOC108256206,LOC107686994,LOC108411041,LOC107690275,LOC107729189 coding downstream 334129 16142650 ~ 16155119 (+)
G135657 NA non-coding upstream 347819 14811738 ~ 14818725 (+)
G135656 NA non-coding upstream 361591 14804480 ~ 14804953 (+)
G135625 NA non-coding upstream 459471 14663752 ~ 14707073 (+)
G135634 NA non-coding upstream 489044 14675852 ~ 14677500 (+)
G135606 NA non-coding upstream 564961 14597130 ~ 14601583 (+)
G135768 NA non-coding downstream 3392 15811913 ~ 15812121 (+)
G135779 NA non-coding downstream 70613 15879134 ~ 15900621 (+)
G136025 NA non-coding downstream 294373 16102894 ~ 16103304 (+)
G136040 NA non-coding downstream 363218 16171739 ~ 16172095 (+)
G136051 NA non-coding downstream 385454 16193975 ~ 16196114 (+)
G135649 NA other upstream 156741 14988298 ~ 15009803 (+)
AMCG00012294 NA other upstream 439761 14710244 ~ 14726783 (+)
G135573 NA other upstream 580774 14584124 ~ 14585770 (+)
G135566 NA other upstream 730816 14434965 ~ 14435728 (+)
AMCG00012267 NA other upstream 776859 14388038 ~ 14389685 (+)
G135781 NA other downstream 102727 15911248 ~ 15930848 (+)
AMCG00012324 NA other downstream 296384 16104905 ~ 16142641 (+)
AMCG00012318 ypela,ypel3,LOC103040367,LOC108411043,LOC103393221,LOC106600728,LOC105012807,LOC104942727 other downstream 367875 16176396 ~ 16183090 (+)
G136076 NA other downstream 441727 16250248 ~ 16259332 (+)
AMCG00012338 ppp4cb,ppp4c,LOC107571759,LOC107590569,LOC107755586,LOC107729194,LOC107567834,LOC107690278 other downstream 585178 16393699 ~ 16432813 (+)

Expression


Co-expression Network