AMCG00012316


Basic Information

Item Value
gene id AMCG00012316
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 15941632 ~ 15984389 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012316
ATGCGCTCCCGTGTGAAGCTCTCGGCCGGAGAAGCGGCTCTTTATTCATttgtctgtttgcctgatccgTCAGACACCCGCCTGTCCTCGGCGCTGGCCGAGCTGATGAGAGCCGCCCTGTGTGAGATCTGGGAGGCGGTGGAAGAGACGAGCCGCGGACAGAGAGACGCGGAGCCCCGGGGAGCAGCCAGCGGTACCTGTCTGTCCTCGGCGCTGGCCGAACTGATGAGAGACGCCCTGTGTGAGATCTGGAAGGCGGTGGAAGACACGGTGTCGGAGGACCGAGAGGAAACAACccaaaggaagagagaaaacgAGGCGCTGAGACAAAGGCTGCAGGAGCTCATGGTTGCGGTAACGGAGGCTGTTTGTCACTGGAGCTCCAGGGCAGACTGGCTGCCTGTGAAGAGCCAAGGAGTCAAAGAGAGACCGACTAGGGGGGCAGCCGTTGGTACCTGTCTTCCCTCGGCGCTGACCGAGCTGATGAGAGCCGCCCTGTGTGAGATCTGGGAGGCGGTGGAAGAGACGAGCCGCGGAGCCAGGAGCGCAGAGTGGAGCTGCGGACAGAGAGACGCGGAGCCCCGGGGAGCAGCCAGCGATCCACCTCTGAAAACCTTCAGTCTGCGCAGACGCCTGGGCAAGCCTGCTATTCTCTGCTGTATGTCGGCTCAGCTGGGGGAGACTGAGGCAGAAGTGCAACAGATGATCCAGGACAAACTGAGGAAGGTGGAGGAGATCAGACAGTCAGTGGAGTTTAGCAAAAGTTTCCCAGCCTTGTGCCCCCTTCCGCACACCAAGGACTGGTCTGACATCACCGTGACCTCTGACCCATGTCTGGGGGCTGTTAGGAGAGCTGTGTCCCAGCTAGAGGAGAGAGTCGGTGAAGAATTGCAGAAGCTCTCTCGCAttgagtTGAAGAAGATACAGCAGTACGCAGCGGATGTGACTCTGGACTCTAACACTGCTCATCCCAGACTGTACCTCTCACGGGATGGGAAACAAGTGAGACTGGGAGACAAAAAGGCTCTCCCTGACAATCCAGAGAGGTTTAAATTTTTTCTCAGTGTCCTGGGAAAGGAGGGTTTCAGTTCAGGGAGACACTACTGGGAGGTGGACGTACAAGACAAGACCGAATGGGTTTTGGGTGTCACCAGGGAGTCCGTCAACAGGAAAGGGCGTGGGAGGAATGAACTGAACCCAGAAAATGGTTACTGGACTGTGTGGCTGAGGGATGGAAACTATTTTGATTGTACTTATCCCttcaaccccctccccctgaaCCTGAGGCCTCAGAAGTTGGGGGTGTATGTGGATTATGAAGGGGGGCAGGTCTCCTTTTACGATGTGGAAGCCAGGTCTCATATCTACACTTTCTCCGACACCTTCACTGAGAAACTCTATCCATATTTCAACCCCTGTACCAATGAGGAAGGTATAAACGCAGCCCCACTGATCATCTCTCCTGTCTGTCACACAGACTGAATGAAACAGATTATCTGTGGGAGGTGTGTGaatattcataatcataataaagtaATAGTACCTTTGAGGGTTCTGTAGTATAGTTGTTTCAGCACTGATAATTTAGAAACGACATCTAATAAAGGAAGTATTAACTTGAACACAGCACTGTGTATagtctctctcactcactcaagGTCTTATTAGGTCGCATTACATGGTAACAGGAATGGATGAATCAGAGTTgtagaaagattaaaaataaattaatctgcttTATCTGGAAACAATCAGAGCAAACAACAAAAGTGGTGAGCAGGAAGTTGACACATTTGTAACTATTGTGGGTGCAGAGACAATTAATACTCAATACTTTTGAAGATTTGCTGAAGATGCAGATGGAGACAAAATAGATG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012316 True 1877 mRNA 0.52 8 15941632 15984389

Neighbor

gene id symbol gene type direction distance location
AMCG00012313 NA coding upstream 45123 15888698 ~ 15896509 (+)
AMCG00012310 NA coding upstream 125918 15764029 ~ 15815714 (+)
AMCG00012307 NA coding upstream 411253 15523512 ~ 15530379 (+)
AMCG00012306 NA coding upstream 510745 15430288 ~ 15430887 (+)
AMCG00012303 NA coding upstream 541194 15399433 ~ 15400438 (+)
AMCG00012317 NA coding downstream 2670 15987059 ~ 16057103 (+)
AMCG00012321 NA coding downstream 73464 16057853 ~ 16100861 (+)
AMCG00012320 LOC108256206,LOC107686994,LOC108411041,LOC107690275,LOC107729189 coding downstream 158261 16142650 ~ 16155119 (+)
AMCG00012319 NA coding downstream 179879 16164268 ~ 16169716 (+)
AMCG00012325 NA coding downstream 214614 16199003 ~ 16210644 (+)
G135779 NA non-coding upstream 41011 15879134 ~ 15900621 (+)
G135768 NA non-coding upstream 129511 15811913 ~ 15812121 (+)
G135666 NA non-coding upstream 134979 15802429 ~ 15806653 (+)
G135721 NA non-coding upstream 583907 15351885 ~ 15357725 (+)
G135657 NA non-coding upstream 1122907 14811738 ~ 14818725 (+)
G136025 NA non-coding downstream 118505 16102894 ~ 16103304 (+)
G136040 NA non-coding downstream 187350 16171739 ~ 16172095 (+)
G136051 NA non-coding downstream 209586 16193975 ~ 16196114 (+)
G136177 NA non-coding downstream 553673 16538062 ~ 16539149 (+)
G136191 NA non-coding downstream 581510 16565899 ~ 16566231 (+)
G135781 NA other upstream 10784 15911248 ~ 15930848 (+)
AMCG00012309 NA other upstream 133111 15166544 ~ 15808521 (+)
AMCG00012308 NA other upstream 252294 15684478 ~ 15689338 (+)
G135670 NA other upstream 317751 15119725 ~ 15623881 (+)
G135744 NA other upstream 377796 15559904 ~ 15563836 (+)
AMCG00012324 NA other downstream 120516 16104905 ~ 16142641 (+)
AMCG00012318 ypela,ypel3,LOC103040367,LOC108411043,LOC103393221,LOC106600728,LOC105012807,LOC104942727 other downstream 192007 16176396 ~ 16183090 (+)
G136076 NA other downstream 265859 16250248 ~ 16259332 (+)
AMCG00012338 ppp4cb,ppp4c,LOC107571759,LOC107590569,LOC107755586,LOC107729194,LOC107567834,LOC107690278 other downstream 409310 16393699 ~ 16432813 (+)
AMCG00012348 NA other downstream 576260 16560649 ~ 16648562 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034711 si:ch211-216p19.6 coding NC_007118.7 CM002891.2 24187581 ~ 24193080 (-)