AMCG00012318 (ypela,ypel3,LOC103040367,LOC108411043,LOC103393221,LOC106600728,LOC105012807,LOC104942727)



Basic Information


Item Value
gene id AMCG00012318
gene name ypela,ypel3,LOC103040367,LOC108411043,LOC103393221,LOC106600728,LOC105012807,LOC104942727
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16176396 ~ 16183090 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00012318
CGACAGAGGGTGAGAGCTGTAAACAAACACGGAGCTCAGCTGCGCGACTCGTACGGGCGCATCGGTGTAGCTTTGTGTTTCAAATTAGTGCATTGGCCGCGTTAGAAACCGGACTCCGCGTCTTTTCTTGCAGACGCGAAAAGAGACGGCTCGTTAAAAGGGGGCTGTTAGTCTAATTGGGGTttacatgcatgtttttgttcgtttgtttaCCTTTTGCCAAATCCGATGAGCACGCCTGCACGAGTGTCTGCGCATTTCTCAGACGTCTGCGTGTGCAAGCACATCCTCCGCGGTTATAGATCCGTGCGCCCgtatgttttaacatttttaataatatagttGTTGATTTTAGTTGCGTTTTAATTGTAGCTATACgttactgtttttttcttcttctccgcGACATCCAGACCACAACAAGGCGGCAGGGTCCCAGCGATGGTGAAGCTGACCAAACCTAAGACATTCCAGGCCTACCTGGACAGCTGCCATCGCCGGTACAGCTGTGTTCACTGCCGCGCTCACTTGGCCAACCACGATGACCTCATCTCCAAGGAGCAGGCCTATGAGTCCAGTCAGAAGTACAAGGAGGGGAAATACATCATAGAGGTGTCTCACATGATCAAGGACAATGGCTGGGACTGAGAACCCCTCGTCTGTCCATTCCCCTCGCTTTCTTCCTCTGTATCCACCTACCTTGCCTGTACCTCTTCCCTTCTCTCCCGTCTGTCCacccattttaaaaaatacttttcttttctctaaGCAGACCGCTGTCACTATCTCTTCGTTCTAGAAGTGTGCTTGTCCATcgtgtccgtctgtctgttcTCTAACATTGTTAAGCGTTTTACTTGTGTGTAAGATCttataaaccttttattttttatctcccgAATGTGAATATATCCCAATAGATGGGCTAGGCACAGGGCTCCTTGTCTGTATTCACAATAGCTGTGGGGCTGCTGTGTGTCAGTTAGCAGGATATAAACAGCAGCAACCATTCCTGTGCCCCCCAAAATTGTGAGTAACCCTGATCCACTCTGTGGTGCTGCAGTGAAACACAGACTGCAATGAGGGAACTGGGCTGAACCCACTGAGTCAGAGCTGGGGTGGTATGTAGTTGgaccgggtgtgtgtgtgtgtgtgttgggtctATTCAATAATTTCATAAAGTCAGGTCAGTGTTGTTTTCACCTAAAATAATGTCTGATCAGggttgtgtttaaatgtttgtttgttgtgaatATACAAGAAATCAGGCTTCAAATTGTTAAAGGTGTCACAGCCAGGAAAATGAATTCCAGCTGTACACGAGAGTCTATTATGTAGTAGATGGCTGCAGCATTAATATATGTAACATAACTGCTTTAGTGCCTGGCCTCTGGCTTGTCGAGGGCTCCTGACCTTTCAGGCTTTTGAAAATCTGCCATTGATCCTAAGAGCAGCGGCTGCCTAAGTGAGAGCTGTGACCCGTTCTGTGAGCTTTCTGCTGATATCGCAGTATCTTGCTTAACAACACTGAAGTTCAGGTCCTCAAGGGCCTGAGTGTCTCCTGGCTCTCATTCCTTTTATTGGCTAATTGGGTGATTTTGAGCGATTCCTAGCCTTTCCTGAACTGGGTACCACAGCTCCACATCAGACGGAATCTGCTATGCTGCGTAGATGAGCGGGTGAAATCCCCATGTTTGGTTATATCGTTTTACTATCAaacctgcatgtgtgtgtctctagTATGCACCAGCCCTGGTCCTGTAGGCGCCCAGTGTAGCAggtttacatttcattacattacattacattacattggaCCAGTTCAGCAGACTTCCCTGTATAGATTGTTGATTTAAGGAGACCATGTGACCTGCTGGCATGTGTGTCTGATATACAGTCAGATACAAGATACAGAGCTACAGGAACAATCCTATAATCAAACACTGGGTTAATTAGTATAGAGacattttgttcagaacaacaaCTTTGTTTAAAACCGCATGTGAACAGCCCCTCCATATAGTGTGAGTTTGTGTTGAATGAATCGGTGGACTGCTTGTGGTTGTGAACACGCTGTAGAGCAGCAGTCTCCAGCCGGGCTTCAATTAGGGGCGAAATATTATGCTAATCTGGATTCATTTCGAAAATTAAACCAAAGTTTggataaaatgaaaaccagtCGGCCCTGTCTGGTTTTCTGTGACCTGGCCTGGGGCCTCCTGGTGTACAGTGTATGGGAGTGTATATAAGAGTTGTGTACATAATATAGTTTGGAtttaaagtgtgtatatatgtacagtgtgtatgtgtttctcaTAAGTCTTTGGCAGTGGGCAACTGGAACCTGTTCTCTCTAAACCAGGCAAATTTTCCAGATTATCTCTTTGAAGGAGTATTGCAGATAATCAGCATTATTcgaattttaaattaataataaagttgtGTGAATGAAAACCTTACTCTGGCAGAGCCTGAGCTAGAGAGACAATTAGGTCACaatttgttaattgtttatttgctcaGTATTGCAGCAATTCAAGGCTGTCATAATAACggaggggaaaaagaaaattggCAACTATGTACTGTGAAGAAATTGAAATAAGCAAAAGGGTTCTAGGGGTAAAGCGATTAAGGTGATTTAGGATTGAAGTAACATCATTGTATTAAgtttggatatatatatattatttttattttaaataattccatTATTTGACTTATCAATATCCTCTGCAAATAGTTCAGTATGCTACTCCTCACATCTTTTGACTGTgacctctgtttgtttttcttcgtCTCAGTATGATGTAAGCCCTGTGTTACTGTTTATTGTAGTTATTGAGTCATTAATAAACAGTTGCAGTCCTTTTTAAAGAACAATGTCTTTCAAAGAGTATCAATAAAGTGTGACCAttgagagtgtgtttgtgttgcttgtttcacattatgtatgtaaacaaccttttcagtcagtcagggtcaattgcaatgaactgaaagcagcagACTGACTGCAGATTATCCCACGATTAGTGCGGAGTTCCATACTACACTAGTATGTGATCTTAGTACCAATTTCAACAACTTTTGCTGCTGAAATTAGTCTGCAGCTGCACATTAAAAATGTTCTGCAACAAACCCAAAGGAACAGGAGCTTACCTCTCTAGATAAAGCACGGgactgcttgtgtgtgtgtgtgtgcagggggacATATTTAACACctttttttagatttagttcaatctgaaaaaatacaaaaaatgtgtttttttccacatttaaaaatatttatgctaaatctccattttccatttttttaggtatttaaaaaataagtgaaa
>TU170961
CAGAGGGTGAGAGCTGTAAACAAACACGGAGCTCAGCTGCGCGACTCGTACGGGCGCATCGGTGTAGCTTTGTGTTTCAAATTAGTGCATTGGCCGCGTTAGAAACCGGACTCCGCGTCTTTTCTTGCAGACGCGAAAAGAGACGGCTCGTTAAAAGGGGGCTGTTAGTCTAATTGGGGTttacatgcatgtttttgttcgtttgtttaCCTTTTGCCAAATCCGATGAGCACGCCTGCACGAGTGTCTGCGCATTTCTCAGACGTCTGCGTGTGCAAGCACATCCTCCGCGGTTATAGATCCGTGCGCCCgtatgttttaacatttttaataatatagttGTTGATTTTAGTTGCGTTTTAATTGTAGCTATACgttactgtttttttcttcttctccgcGACATCCAGACCACAACAAGGCGGCAGGGTCCCAGCGATGGTGAAGCTGACCAAACCTAAGACATTCCAGGCCTACCTGGACAGCTGCCATCGCCGGTACAGCTGTGTTCACTGCCGCGCTCACTTGGCCAACCACGATGACCTCATCTCCAAGTCTTTTCAAGGAAGTCAAGGAAGAGCCTACCTGTTCAACTCAGTTGTGAATGTGGGCTGTGGACCAGCGGAGGAAAGGCTGCTGTTGACCGGCCTCCATGCCGTGGCCGACATCTACTGTGAGAACTGCAACACCACGCTGGGCTGGAAATACGAGCAGGCCTATGAGTCCAGTCAGAAGTACAAGGAGGGGAAATACATCATAGAGGTGTCTCACATGATCAAGGACAATGGCTGGGACTGAGAACCCCTCGTCTGTCCATTCCCCTCGCTTTCTTCCTCTGTATCCACCTACCTTGCCTGTACCTCTTCCCTTCTCTCCCGTCTGTCCacccattttaaaaaatacttttcttttctctaaGCAGACCGCTGTCACTATCTCTTCGTTCTAGAAGTGTGCTTGTCCATcgtgtccgtctgtctgttcTCTAACATTGTTAAGCGTTTTACTTGTGTGTAAGATCttataaaccttttattttttatctcccgAATGTGAATATATCCCAATAGATGGGCTAGGCACAGGGCTCCTTGTCTGTATTCACAATAGCTGTGGGGCTGCTGTGTGTCAGTTAGCAGGATATAAACAGCAGCAACCATTCCTGTGCCCCCCAAAATTGTGAGTAACCCTGATCCACTCTGTGGTGCTGCAGTGAAACACAGACTGCAATGAGGGAACTGGGCTGAACCCACTGAGTCAGAGCTGGGGTGGTATGTAGTTGgaccgggtgtgtgtgtgtgtgtgttgggtctATTCAATAATTTCATAAAGTCAGGTCAGTGTTGTTTTCACCTAAAATAATGTCTGATCAGggttgtgtttaaatgtttgtttgttgtgaatATACAAGAAATCAGGCTTCAAATTGTTAAAGGTGTCACAGCCAGGAAAATGAATTCCAGCTGTACACGAGAGTCTATTATGTAGTAGATGGCTGCAGCATTAATATATGTAACATAACTGCTTTAGTGCCTGGCCTCTGGCTTGTCGAGGGCTCCTGACCTTTCAGGCTTTTGAAAATCTGCCATTGATCCTAAGAGCAGCGGCTGCCTAAGTGAGAGCTGTGACCCGTTCTGTGAGCTTTCTGCTGATATCGCAGTATCTTGCTTAACAACACTGAAGTTCAGGTCCTCAAGGGCCTGAGTGTCTCCTGGCTCTCATTCCTTTTATTGGCTAATTGGGTGATTTTGAGCGATTCCTAGCCTTTCCTGAACTGGGTACCACAGCTCCACATCAGACGGAATCTGCTATGCTGCGTAGATGAGCGGGTGAAATCCCCATGTTTGGTTATATCGTTTTACTATCAaacctgcatgtgtgtgtctctagTATGCACCAGCCCTGGTCCTGTAGGCGCCCAGTGTAGCAggtttacatttcattacattacattacattacattggaCCAGTTCAGCAGACTTCCCTGTATAGATTGTTGATTTAAGGAGACCATGTGACCTGCTGGCATGTGTGTCTGATATACAGTCAGATACAAGATACAGAGCTACAGGAACAATCCTATAATCAAACACTGGGTTAATTAGTATAGAGacattttgttcagaacaacaaCTTTGTTTAAAACCGCATGTGAACAGCCCCTCCATATAGTGTGAGTTTGTGTTGAATGAATCGGTGGACTGCTTGTGGTTGTGAACACGCTGTAGAGCAGCAGTCTCCAGCCGGGCTTCAATTAGGGGCGAAATATTATGCTAATCTGGATTCATTTCGAAAATTAAACCAAAGTTTggataaaatgaaaaccagtCGGCCCTGTCTGGTTTTCTGTGACCTGGCCTGGGGCCTCCTGGTGTACAGTGTATGGGAGTGTATATAAGAGTTGTGTACATAATATAGTTTGGAtttaaagtgtgtatatatgtacagtgtgtatgtgtttctcaTAAGTCTTTGGCAGTGGGCAACTGGAACCTGTTCTCTCTAAACCAGGCAAATTTTCCAGATTATCTCTTTGAAGGAGTATTGCAGATAATCAGCATTATTcgaattttaaattaataataaagttgtGTGAATGAAAACCTTACTCTGGCAGAGCCTGAGCTAGAGAGACAATTAGGTCACaatttgttaattgtttatttgctcaGTATTGCAGCAATTCAAGGCTGTCATAATAACggaggggaaaaagaaaattggCAACTATGTACTGTGAAGAAATTGAAATAAGCAAAAGGGTTCTAGGGGTAAAGCGATTAAGGTGATTTAGGATTGAAGTAACATCATTGTATTAAgtttggatatatatatattatttttattttaaataattccatTATTTGACTTATCAATATCCTCTGCAAATAGTTCAGTATGCTACTCCTCACATCTTTTGACTGTgacctctgtttgtttttcttcgtCTCAGTATGATGTAAGCCCTGTGTTACTGTTTATTGTAGTTATTGAGTCATTAATAAACAGTTGCAGTCCTTTTTAAAGAACAATGTCTTTCAAAGAGTATCAATAAAGTGTGACCAttgaga

Function


symbol description
ypel3 Predicted to enable metal ion binding activity. Acts upstream of or within brain development. Predicted to be located in nucleolus. Is expressed in brain; pronephric duct; tail bud; ventral mesoderm; and yolk syncytial layer. Orthologous to several human genes including YPEL3 (yippee like 3).

GO:      GO:0044699

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00012318 True 3344 mRNA 0.42 3 16176396 16183090
TU170961 False 3072 TUCP 0.43 5 16176399 16182668

Neighbor


gene id symbol gene type direction distance location
AMCG00012319 NA coding upstream 6680 16164268 ~ 16169716 (+)
AMCG00012320 LOC108256206,LOC107686994,LOC108411041,LOC107690275,LOC107729189 coding upstream 21277 16142650 ~ 16155119 (+)
AMCG00012321 NA coding upstream 75535 16057853 ~ 16100861 (+)
AMCG00012317 NA coding upstream 119293 15987059 ~ 16057103 (+)
AMCG00012316 NA coding upstream 192007 15941632 ~ 15984389 (+)
AMCG00012325 NA coding downstream 15913 16199003 ~ 16210644 (+)
AMCG00012327 eif3c,LOC106904143,LOC100304733,LOC102226018,LOC105917567 coding downstream 29823 16212913 ~ 16226772 (+)
AMCG00012326 NA coding downstream 104787 16287877 ~ 16288823 (+)
AMCG00012330 NA coding downstream 109181 16292271 ~ 16300821 (+)
AMCG00012332 NA coding downstream 124319 16307409 ~ 16316260 (+)
G136040 NA non-coding upstream 4301 16171739 ~ 16172095 (+)
G136025 NA non-coding upstream 73092 16102894 ~ 16103304 (+)
G135779 NA non-coding upstream 275775 15879134 ~ 15900621 (+)
G135768 NA non-coding upstream 364275 15811913 ~ 15812121 (+)
G135666 NA non-coding upstream 369743 15802429 ~ 15806653 (+)
G136051 NA non-coding downstream 10885 16193975 ~ 16196114 (+)
G136177 NA non-coding downstream 354972 16538062 ~ 16539149 (+)
G136191 NA non-coding downstream 382809 16565899 ~ 16566231 (+)
G136195 NA non-coding downstream 437165 16620255 ~ 16632264 (+)
G136236 NA non-coding downstream 645960 16829050 ~ 16831802 (+)
AMCG00012324 NA other upstream 33755 16104905 ~ 16142641 (+)
G135781 NA other upstream 245548 15911248 ~ 15930848 (+)
AMCG00012309 NA other upstream 367875 15166544 ~ 15808521 (+)
G136076 NA other downstream 67158 16250248 ~ 16259332 (+)
AMCG00012338 ppp4cb,ppp4c,LOC107571759,LOC107590569,LOC107755586,LOC107729194,LOC107567834,LOC107690278 other downstream 210609 16393699 ~ 16432813 (+)
AMCG00012348 NA other downstream 377559 16560649 ~ 16648562 (+)
AMCG00012349 LOC106588560,LOC106570198 other downstream 491189 16674279 ~ 16706193 (+)
AMCG00012351 NA other downstream 550336 16733426 ~ 16765108 (+)

Expression



Co-expression Network