AMCG00012319


Basic Information

Item Value
gene id AMCG00012319
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16164268 ~ 16169716 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012319
GGTGGACACTACAGCACCATAACCACACCGAGAGAGGCAGGGAGCAAGGGAGGGATatatcctgagagagagagggagagagagagagagaggggggcagGCAGGCCATTGCAGCACTGTTTCAAACGGCTTTATTAGCATACCTAccaaacaagtttttttttttttcttggttgttttttttctgcattcctGTTTGTTAGAGTGTGGCATTCCTCCTGTGTATTTATCTACACACACTGGCCACGGAGGGGTTGGAACTATTCATTTTTGTTAATAGAATTAAGGGACAGTAAACTTAGTTTTTCTTCAATTTCTTGTGATTTGACAACTTTTAAAAGGATTTTATtatcatctttatttttaagctgATAAAGCTTCACGACTTTCTTTCTGGGTGTGAAGGCTGCAATTGAGGATGTCCAGTTACATGTACTACCTCCTCCCAGCCATAGGGGGATACACCCTCACCTCTCTGTTCTTCCTAAAGAACCCTCAACTCCTGCACAAGAAGAAACGCACGGCCTTCTATGCCACTCACATCTCTCACCGAGGAGggCGGTACAgcacagggacagacaggaaGTTTCCTCTCCTGGAGGACGTGTTCCGGAAGTTCCCCCACACGCCTGTCAACACAGAGATCAAGGAGGACAACGAGAGACTCATCAAGGAGGTGTCCTCTCTAGTGAAAAAGTATAACAGAGAGGACATCACGGTGTGGGCCAGCATGAAATCCCACATCCTGAAAAAGTGCCGGAAAGAGAACCCCTCTATGCCTTTCATGTTCTCAGTACCCAGGGGGGTTcagttgctgctgctgtattaCTGTGGTCTGCTGCCCTTCACTCCACTCCCAGAGAGCTTCCTGCAGATGACCTATATTCCGTCATCTCCCATCATGAGGAACAGAATTGTCACTTATCTGATGGAAAAATTGATGCTACCCTCGGCTTTGTTGAAACACCTGGTGGAGAGAGGAATACAGGTCCAGCTGTTTGTGTGTAATGAGGACCAGGATTTCCAAACAGCCTTCTCTCTCGGGGCAACAGGCGTAATGACTGACTACCCTTCACGTCTCCGGGACTACCTCCGCAGTCACCCACCCCCCAGGCCCCCACCGAGCCAATAGCAATGTCATAGAACGCCCTTCAGCACTTGGTCAGCCCCCCCACTCCCAGTCGGCACTTCACCAGCATCAAATCCcattatatttcaattgatATAGTCTAAATTGTCTGTGAGTTGAGCAGAATATCTCAAAAGAAACTCGATAGGATTGGTTATAAACTCCGGTTGGACACAAGcggaaataatgtaataaattgtgtagtatacaatatattacaataaaatatgtcaTAAACAAATATGATGTAATATATAAACTCCTCTCAAggctttattaaaaaagaaatgtatcacTTTCTAAAGTCAATTACATAAATCAAGCTTTAGACATCACTTTGCAAACAACTTTTTAGTTGAACCCTATTGAAAAGCGTGCtagtaatgtgttaaaatgagAAAAGACAGGGGCAGGGAACTGCACGGGAGAGAATAAATGACACTggacaacacaatacaatacaacgcaacacaatacagtacaagacAATACAATATAGTAAAGTACAGGATGATatagtgtggtacagtacagtgcaatataaatcaatataatccTATATAATATGGTAAAGAACAATGTAGTATTGCAGTAAAATGTTCCTTCCTGACTTGCTGTGCTGAACttgtttatcttattttatgcTTCTTGTAAGTATAATGAGATGTCGTATATGACTGAACTTCAGAGTCTGTGGTAATAAACTGTTACCTTG

Function

GO: NA

KEGG:

id description
ko00512 Mucin type O-glycan biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012319 True 1844 mRNA 0.43 8 16164268 16169716

Neighbor

gene id symbol gene type direction distance location
AMCG00012320 LOC108256206,LOC107686994,LOC108411041,LOC107690275,LOC107729189 coding upstream 9149 16142650 ~ 16155119 (+)
AMCG00012321 NA coding upstream 63407 16057853 ~ 16100861 (+)
AMCG00012317 NA coding upstream 107165 15987059 ~ 16057103 (+)
AMCG00012316 NA coding upstream 179879 15941632 ~ 15984389 (+)
AMCG00012313 NA coding upstream 267759 15888698 ~ 15896509 (+)
AMCG00012325 NA coding downstream 29287 16199003 ~ 16210644 (+)
AMCG00012327 eif3c,LOC106904143,LOC100304733,LOC102226018,LOC105917567 coding downstream 43197 16212913 ~ 16226772 (+)
AMCG00012326 NA coding downstream 118161 16287877 ~ 16288823 (+)
AMCG00012330 NA coding downstream 122555 16292271 ~ 16300821 (+)
AMCG00012332 NA coding downstream 137693 16307409 ~ 16316260 (+)
G136025 NA non-coding upstream 60964 16102894 ~ 16103304 (+)
G135779 NA non-coding upstream 263647 15879134 ~ 15900621 (+)
G135768 NA non-coding upstream 352147 15811913 ~ 15812121 (+)
G135666 NA non-coding upstream 357615 15802429 ~ 15806653 (+)
G135721 NA non-coding upstream 806543 15351885 ~ 15357725 (+)
G136040 NA non-coding downstream 2023 16171739 ~ 16172095 (+)
G136051 NA non-coding downstream 24259 16193975 ~ 16196114 (+)
G136177 NA non-coding downstream 368346 16538062 ~ 16539149 (+)
G136191 NA non-coding downstream 396183 16565899 ~ 16566231 (+)
G136195 NA non-coding downstream 450539 16620255 ~ 16632264 (+)
AMCG00012324 NA other upstream 21627 16104905 ~ 16142641 (+)
G135781 NA other upstream 233420 15911248 ~ 15930848 (+)
AMCG00012308 NA other upstream 474930 15684478 ~ 15689338 (+)
G135744 NA other upstream 600432 15559904 ~ 15563836 (+)
AMCG00012302 NA other upstream 684719 15452069 ~ 15479549 (+)
AMCG00012318 ypela,ypel3,LOC103040367,LOC108411043,LOC103393221,LOC106600728,LOC105012807,LOC104942727 other downstream 6680 16176396 ~ 16183090 (+)
G136076 NA other downstream 80532 16250248 ~ 16259332 (+)
AMCG00012338 ppp4cb,ppp4c,LOC107571759,LOC107590569,LOC107755586,LOC107729194,LOC107567834,LOC107690278 other downstream 223983 16393699 ~ 16432813 (+)
AMCG00012348 NA other downstream 390933 16560649 ~ 16648562 (+)
AMCG00012349 LOC106588560,LOC106570198 other downstream 504563 16674279 ~ 16706193 (+)

Expression


Co-expression Network