AMCG00012320 (LOC108256206,LOC107686994,LOC108411041,LOC107690275,LOC107729189)


Basic Information

Item Value
gene id AMCG00012320
gene name LOC108256206,LOC107686994,LOC108411041,LOC107690275,LOC107729189
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16142650 ~ 16155119 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012320
ATGGCGGATTCGAGCGGCAGCGTAGCAGGAGCCGGAGCCGCGGCCTCGAGTAGCGGCACTGCCGGCGCTGGGGGCGCAGCGGCGGGCGGCGGAGCGGCTGGAGCGGCGGGATCCAAGCCGGGCCTGGAGTCGGTCAAGGGGCAGAATTTCGACGTGGGTCCCCGCTACACGGACCTACTGTACATCGGCGAAGGGGCCTACGGGATGGTCTGCTCAGCCTACGATAATGTGAACAAACTGCGTGTGGCCATCAAGAAAATCAGCCCGTTCGAGCACCAGACGTACTGCCAGCGCACGCTGCGGGAGATCAAGATCCTGCTGCGCTTCCGGCACGAGAACATCATCGGCATCAACGACATCCTGCGCGCCCGCCGCATCGACAGCATGAGAGATGTGTATCCTTCCCACATCCTCCCGGCACTGCAGGCAGAGCGCAGAGTGGTCCAGGTCATACTCTGGACTGCGAATACCTACATCGTGCAGGACCTGATGGAGACGGACCTGTACAAGCTGCTGAAGACCCAGCAGCTCAGCAACGACCACATCTGCTACTTCCTGTACCAGATCCTGCGAGGGCTCAAGTACATCCACTCGGCCAACGTGCTGCACAGAGACCTGAAGCCCTCCAACCTGCTCATCAACACCACCTGCGATCTCAAGATCTGTGATTTTGGGCTGGCCAGGATAGCGGACCCGGAGCACGACCACACGGGCTTCCTAACGGAGTATGTGGCGACGCGCTGGTACAGGGCACCCGAGATCATGCTCAATTccaagGGCTACACTAAATCGATTGATATTTGGTCGGTGGGCTGTATCCTGGCAGAGATGCTCTCCAACAGACCCATCTTCCCTGGGAAGCACTACCTGGACCAGCTGAACCACATCCTGGGAATCCTGGGCTCGCCTTCTCAGGAAGATCTGAACTGCATCATCAACCTGAAGGCCAGGAACTACCTGCAGACTCTAGACCTTCTGGACAGGATGTTGACCTTCAACGCCATCAAGAGGATCACTCCCGTGGCCGAGGAGCCGTTCACCTTCAACATGGAGCTGGACGACCTGCCCAAGGAGAAGCTGAAGGAGCTCATCTACGAGGAGACGGCCCGCTTTCAGGCCAACTACCAGggctcctga

Function

NR:

description
PREDICTED: mitogen-activated protein kinase 1-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0001654 eye development biological_process
GO:0007420 brain development biological_process
GO:0009790 embryo development biological_process
GO:0005524 ATP binding molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012320 True 1137 mRNA 0.59 8 16142650 16155119

Neighbor

gene id symbol gene type direction distance location
AMCG00012321 NA coding upstream 41789 16057853 ~ 16100861 (+)
AMCG00012317 NA coding upstream 85547 15987059 ~ 16057103 (+)
AMCG00012316 NA coding upstream 158261 15941632 ~ 15984389 (+)
AMCG00012313 NA coding upstream 246141 15888698 ~ 15896509 (+)
AMCG00012310 NA coding upstream 326936 15764029 ~ 15815714 (+)
AMCG00012319 NA coding downstream 9149 16164268 ~ 16169716 (+)
AMCG00012325 NA coding downstream 43884 16199003 ~ 16210644 (+)
AMCG00012327 eif3c,LOC106904143,LOC100304733,LOC102226018,LOC105917567 coding downstream 57794 16212913 ~ 16226772 (+)
AMCG00012326 NA coding downstream 132758 16287877 ~ 16288823 (+)
AMCG00012330 NA coding downstream 137152 16292271 ~ 16300821 (+)
G136025 NA non-coding upstream 39346 16102894 ~ 16103304 (+)
G135779 NA non-coding upstream 242029 15879134 ~ 15900621 (+)
G135768 NA non-coding upstream 330529 15811913 ~ 15812121 (+)
G135666 NA non-coding upstream 335997 15802429 ~ 15806653 (+)
G135721 NA non-coding upstream 784925 15351885 ~ 15357725 (+)
G136040 NA non-coding downstream 16620 16171739 ~ 16172095 (+)
G136051 NA non-coding downstream 38856 16193975 ~ 16196114 (+)
G136177 NA non-coding downstream 382943 16538062 ~ 16539149 (+)
G136191 NA non-coding downstream 410780 16565899 ~ 16566231 (+)
G136195 NA non-coding downstream 465136 16620255 ~ 16632264 (+)
AMCG00012324 NA other upstream 9 16104905 ~ 16142641 (+)
G135781 NA other upstream 211802 15911248 ~ 15930848 (+)
AMCG00012309 NA other upstream 334129 15166544 ~ 15808521 (+)
AMCG00012318 ypela,ypel3,LOC103040367,LOC108411043,LOC103393221,LOC106600728,LOC105012807,LOC104942727 other downstream 21277 16176396 ~ 16183090 (+)
G136076 NA other downstream 95129 16250248 ~ 16259332 (+)
AMCG00012338 ppp4cb,ppp4c,LOC107571759,LOC107590569,LOC107755586,LOC107729194,LOC107567834,LOC107690278 other downstream 238580 16393699 ~ 16432813 (+)
AMCG00012348 NA other downstream 405530 16560649 ~ 16648562 (+)
AMCG00012349 LOC106588560,LOC106570198 other downstream 519160 16674279 ~ 16706193 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location