AMCG00012324


Basic Information

Item Value
gene id AMCG00012324
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16104905 ~ 16142641 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012324
atgtgcatcaATGTGTTGGGCTATAATgggACTGTCTTCCGCAGGATCAAGGGGTTCGGGGGTGTCCGGGGCGAGCAGGCGACCTTCATTGCCAGCCCTGGCACTCGTCCCACCTCTGGGGCAGAGAGTGCTGTCGTCTCAGCACCAGTGCGCAGCCCCGGATTTCAGCGCCCAGACAGTGTCCATTgCCATGAATTTGTGGATAGATACAGAGATAAACTCATTCAAAGAGTCTCTTTGGTGGAGCCATTAGCAGACGCCCTGCTCTCACAATGCCTGATCCAGACTGAAATGTACTCCAATGTCTTCGCTGCCAGCACCAcctGGAAGAAGACTTACAGCATCGGATTTCAAGAGTGGCTGTGCGGATCTTCCCAGTGCAGCATTCAAACCTCCCAGGCGTGGCCTCGTCTGCTGTCGCTGTTATTGTACCGTGTTTCTGTCTCCTCCCGGCACAGCTATAAGACCCGACGGCCGCGCACTGTACATATCCGTCAGCCCCCCCTTCCCAGCCCCCCTGAGAAACCGAGAAAAGCCTCACGGAGCCACTGA
>TU170940
tggaaatctgaGCTTCACAAACTTGACTAGTGTACTTCAATTTCCAGGAAAGGgctgcacactttttttttactcttttgaGATATTAAACcccaattataatttttatttattagctcACGTGTCGGATGTGACAAAACTACAAGACCACActttaaacacagacacatcatCACAGAGAGTTACTCAATCATACGGAGTGGAcaactgcactacactacatactgccattatttggCCATGAATTTGTGGATAGATACAGAGATAAACTCATTCAAAGAGTCTCTTTGGTGGAGCCATTAGCAGACGCCCTGCTCTCACAATGCCTGATCCAGACTGAAATGTACTCCAATGTCTTCGCTGCCAGCACCAGTGAGAAGAAAATGAGAGAGCTGTATGAAGTCCTGCACAGTTGGGGACCTTAAACAGCAAGATCCTTAGCTGGTCAAAGCGCTGAGTACCCAGACAGCAAACTAAGTTGGCCCAATGTTGGTTTATGGTTGGCTTGGTTGGCAAGTGGTCAGTTGTCACGCTAACTGTGGGCCAACTTTGGCCCAACAATTTGCAtctcaagtaaaataaaataaaataaaaaaataaggtatgtggagagagagagagaaaataagttaTTGTGCTACCCCCTATTTCTGAAAGCTGACTTATGTGATGTACCCAGTAAATCTGTATTACTGAGGGTTAGTATTgttcatgaagaagaaaaaatgaaaattaaacaagttgttctgtttatgtttttgattgttcTTATTGGTtgattaatataaacatgaGCAGAGTACCTCAGGGTGAGGagtttgctgaagatgttgcGGTAAACCAGAggtaaaaattaataaatacattgtttcatttagtttgcttgtttgtttttagcctGGAAGAAGACTTACAGCATCGGATTTCAAGGTAAGATATGTTTTGAATGAAATTATTTGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012324 False 552 mRNA 0.56 6 16104905 16142641
TU170940 True 962 lncRNA 0.38 3 16131831 16136715

Neighbor

gene id symbol gene type direction distance location
AMCG00012321 NA coding upstream 4044 16057853 ~ 16100861 (+)
AMCG00012317 NA coding upstream 47802 15987059 ~ 16057103 (+)
AMCG00012316 NA coding upstream 120516 15941632 ~ 15984389 (+)
AMCG00012313 NA coding upstream 208396 15888698 ~ 15896509 (+)
AMCG00012310 NA coding upstream 289191 15764029 ~ 15815714 (+)
AMCG00012320 LOC108256206,LOC107686994,LOC108411041,LOC107690275,LOC107729189 coding downstream 9 16142650 ~ 16155119 (+)
AMCG00012319 NA coding downstream 21627 16164268 ~ 16169716 (+)
AMCG00012325 NA coding downstream 56362 16199003 ~ 16210644 (+)
AMCG00012327 eif3c,LOC106904143,LOC100304733,LOC102226018,LOC105917567 coding downstream 70272 16212913 ~ 16226772 (+)
AMCG00012326 NA coding downstream 145236 16287877 ~ 16288823 (+)
G136025 NA non-coding upstream 1601 16102894 ~ 16103304 (+)
G135779 NA non-coding upstream 204284 15879134 ~ 15900621 (+)
G135768 NA non-coding upstream 292784 15811913 ~ 15812121 (+)
G135666 NA non-coding upstream 298252 15802429 ~ 15806653 (+)
G135721 NA non-coding upstream 747180 15351885 ~ 15357725 (+)
G136040 NA non-coding downstream 29098 16171739 ~ 16172095 (+)
G136051 NA non-coding downstream 51334 16193975 ~ 16196114 (+)
G136177 NA non-coding downstream 395421 16538062 ~ 16539149 (+)
G136191 NA non-coding downstream 423258 16565899 ~ 16566231 (+)
G136195 NA non-coding downstream 477614 16620255 ~ 16632264 (+)
G135781 NA other upstream 174057 15911248 ~ 15930848 (+)
AMCG00012309 NA other upstream 296384 15166544 ~ 15808521 (+)
AMCG00012308 NA other upstream 415567 15684478 ~ 15689338 (+)
G135670 NA other upstream 481024 15119725 ~ 15623881 (+)
G135744 NA other upstream 541069 15559904 ~ 15563836 (+)
AMCG00012318 ypela,ypel3,LOC103040367,LOC108411043,LOC103393221,LOC106600728,LOC105012807,LOC104942727 other downstream 33755 16176396 ~ 16183090 (+)
G136076 NA other downstream 107607 16250248 ~ 16259332 (+)
AMCG00012338 ppp4cb,ppp4c,LOC107571759,LOC107590569,LOC107755586,LOC107729194,LOC107567834,LOC107690278 other downstream 251058 16393699 ~ 16432813 (+)
AMCG00012348 NA other downstream 418008 16560649 ~ 16648562 (+)
AMCG00012349 LOC106588560,LOC106570198 other downstream 531638 16674279 ~ 16706193 (+)

Expression


Co-expression Network