AMCG00012325


Basic Information

Item Value
gene id AMCG00012325
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16199003 ~ 16210644 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012325
CGGCTGTGTCGGTTCGCAATGGTTCTCATTAAGGAATAGTGAGTGCAgacaaaacagtattttctaaTTCGCATGAATACATCCATCACAGGGGCGGGATCATCCTCTTCATACATCGATAACACGGCAATTAGTAGCGCCGGCGGGTATTATTGGTGTGGCTGTCGTCAGAGATCAGCATTGCCATCGCTTGGCGCGGTTCATAAACAttcagcatcatcatcatcatcatcgtcatctttatttCAAGTCCTGTTGCCATGTTCTGTAGAGGAGTATCAAGTTGGCCAGCTGTTTTCGGTGGCCGAGGCCAGCAAGAACAACACCGGGGGCGGGGAGGGCATCGAGGTCCTGCGCAATGAGCCGTATgagaaggagggggagaagGGCCAGTACACCCATAAGATCTACCACATACACAGTAAGGTGCCCAGTTTCATTCAGATGTTCGCCCCTGAGGGAGCTCTCGTTTTCCATGAGAAAGCCTGGAACGCCTACCCCTACTGCCGCACCAGCCTGGCTCTTACCCCCCCCCCTGTTCACCGACTATCTCTGCAGAACGAATACATGAAGGATGACTTCTTTATAAAGATCGAGACCTGGCACAAGCCCGACATGGGGACCACAGACAACGACTATAAGCCAGATGAAGACCCTGCTGTTTTTCACTCGGAGAAAACTGGGAGAGGCCCACTGGGGCCCGGCTGGAAGaagGAGCTATACAGTAGTGACTGGCCCCACATGACGGCCTATAAGCTGGTCACTGTTCACTTTCGCTGGTGGGGTCTGCAAGGGAGGGTGGAAAAATTTATACACAAGCAGCAGGAGAAAAGGTTGTTCACTAATTTCCACAGACAGCTGTTCTGCTGGATTGACCGCTGGGTGGACCTCTCGATGGAGGACATCCGGAGAATGGAGGAGGAGACGCAGAGGGAGCTGGACCAGATGCGTAACCAGGGCTCTGTGAGAGGCATGAAAGCTGGAGACGACTAGACTGAGAGCAGcCAATCAGCACGTGCCACATCACCAACACTTTCAAGACAGGAAGACGCCAACCCAGAGATAGGAGattacatctgtgtgtgtgtgtgtgtgtgagagtgagagaatggtgtgtgtgtgtgtatgtatgtgtgtgtgcatgtctgggTATACCTGTGCAAGTCTGTGAGTGTCATTTATGTTTTGCTGCCAAACCATGTCCAGATTTCCCTTAATTTAAACAAACCTGGGTttgttgaatacattttaaccatattatctttgtttttattattgttgttttttgttatttcattttttttttgtttttctgttcatgttactataattattataactttATCTGAAAGTCCCTGTCATTTTGTAATGAAGATACTTGTAAGAGCATTCAACCTGATTGCGACCCAGAACTATAATAAATCATGACTCTTATA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0015914 phospholipid transport biological_process
GO:0015695 organic cation transport biological_process
GO:0015697 quaternary ammonium group transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0008525 phosphatidylcholine transporter activity molecular_function
GO:0008526 phosphatidylinositol transfer activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012325 True 1436 mRNA 0.47 10 16199003 16210644

Neighbor

gene id symbol gene type direction distance location
AMCG00012319 NA coding upstream 29287 16164268 ~ 16169716 (+)
AMCG00012320 LOC108256206,LOC107686994,LOC108411041,LOC107690275,LOC107729189 coding upstream 43884 16142650 ~ 16155119 (+)
AMCG00012321 NA coding upstream 98142 16057853 ~ 16100861 (+)
AMCG00012317 NA coding upstream 141900 15987059 ~ 16057103 (+)
AMCG00012316 NA coding upstream 214614 15941632 ~ 15984389 (+)
AMCG00012327 eif3c,LOC106904143,LOC100304733,LOC102226018,LOC105917567 coding downstream 2269 16212913 ~ 16226772 (+)
AMCG00012326 NA coding downstream 77233 16287877 ~ 16288823 (+)
AMCG00012330 NA coding downstream 81627 16292271 ~ 16300821 (+)
AMCG00012332 NA coding downstream 96765 16307409 ~ 16316260 (+)
AMCG00012331 NA coding downstream 136432 16347076 ~ 16353476 (+)
G136051 NA non-coding upstream 2889 16193975 ~ 16196114 (+)
G136040 NA non-coding upstream 26908 16171739 ~ 16172095 (+)
G136025 NA non-coding upstream 95699 16102894 ~ 16103304 (+)
G135779 NA non-coding upstream 298382 15879134 ~ 15900621 (+)
G135768 NA non-coding upstream 386882 15811913 ~ 15812121 (+)
G136177 NA non-coding downstream 327418 16538062 ~ 16539149 (+)
G136191 NA non-coding downstream 355255 16565899 ~ 16566231 (+)
G136195 NA non-coding downstream 409611 16620255 ~ 16632264 (+)
G136236 NA non-coding downstream 618406 16829050 ~ 16831802 (+)
G136237 NA non-coding downstream 631923 16842567 ~ 16907105 (+)
AMCG00012318 ypela,ypel3,LOC103040367,LOC108411043,LOC103393221,LOC106600728,LOC105012807,LOC104942727 other upstream 15913 16176396 ~ 16183090 (+)
AMCG00012324 NA other upstream 56362 16104905 ~ 16142641 (+)
G135781 NA other upstream 268155 15911248 ~ 15930848 (+)
AMCG00012308 NA other upstream 509665 15684478 ~ 15689338 (+)
G135744 NA other upstream 635167 15559904 ~ 15563836 (+)
G136076 NA other downstream 39604 16250248 ~ 16259332 (+)
AMCG00012338 ppp4cb,ppp4c,LOC107571759,LOC107590569,LOC107755586,LOC107729194,LOC107567834,LOC107690278 other downstream 183055 16393699 ~ 16432813 (+)
AMCG00012348 NA other downstream 350005 16560649 ~ 16648562 (+)
AMCG00012349 LOC106588560,LOC106570198 other downstream 463635 16674279 ~ 16706193 (+)
AMCG00012351 NA other downstream 522782 16733426 ~ 16765108 (+)

Expression


Co-expression Network