AMCG00012330



Basic Information


Item Value
gene id AMCG00012330
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16292271 ~ 16300821 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00012330
CGACGCTCTAAAATTTGAAAAGAAATTAGAGGCGCAAGGCCTGCCGCCCGTCCCGTCTCTTTTTAACCTTTTAAGCTCCGCACAATAACTTAgttttatgcatatatttataacatgtaCATATAATTTCAGTGCACTCAAATTATTGATGATATAAAAACCGTAACAATCAACCTGGACTTCACATTCAACGACTTCAAAGTGTCTGGACGGGAGAAGGAAAGcgatGGCTCAGcgggtcagtgtgtgtgaggcgGGGGCTCCTCGGCGGCCGCCCCCGACCCGGGTGCGAGTGGCGGTCAGGCTCCGGCCCTACATGAGCGCCATCGCTGCTGCTTCCACCGACGAGGACAAGAGAGACGGGCCCTGTGTGAGGGGCCAGGGGTCCCGCGGCCTGGACATCGTCAACTGGAGGAACTCCACCGAGACCCTGCACTATGAgTTTGATGTGTTCCACGGAGAGCAGAGCTCCCAGCAGGAGGTGTATCTGTCTtcagtcaggcctgtcctgcCTCATGTGCTCTGTGGACAGAACGCCAGTGTCTTCGCATACGGGCCCACGGGCGCAGGCAAGACCCACACAATGCTGGGCAGTGCAGAGCAGCCGGGCGTGATCCCCCGCGCCGTGAGGGACTTGTTCCAGCTGGTGAGGGAGCAGAGGGCACAGCCAGAGAACCAGGACTGGGAGTACAGCATCGGCATGTCATACCTGGAGATCTACAATGAGAAgGTGCTGGACTTGCTGGAGCGGGGGGAGCAGGACCTGCCTATCCGGGAGGACCGGGAGCACAACATCCTGATCCCGGGGCTGCAGCTGACCGGGAAGCTGTACCTGATCGACCTGGCCGGCTCGGAGGACAACCGGCGCACGGGCAATCAGGGCCTGCGTCTGAAGGAGAGCGGCGCCATCAACCGCTCCCTGTTCACCCTCAGCAAGGTGGTGGATGCCCTGAACCACGGCCTGGCCAGGGTGCCCTACAGGGACAGCAAGCTCACACGCCTGCTGCAGGACTCCCTGGGTGGCTCTGCTCACTCGGTGATGATCACGAACATCGCCCCGGAGTACCAGTACTACTTTGACACGCTCACGGCACTCAACTTCGCCGCCAAGTCCAAACAGATCGTCAACAAGCCCTTCATCCGAGAGACGGTGCGCGCTGCTGtgcCGGCACCCAAGAGGCCTCGGGAAGAGCAGGGGACTGCAGTAGCACCACCACCACAGAGTAAGAGAGCGAGGCAGGGGCAGAGTGAGGGCCAGGAGGCGGGGCCGGGGACAGCGCAGACACACAGCCCCAGCGACCCCTCTGTGCTGCAGAGACTGCTGGCTCTGGAGAAGATGCTCATGGGGAccccagagagacagagactgacGCTGCTCAAGACTGTGGCCCAGTCCCGGAAAGAGATACAGACGGACGAACAGCAGCCCCCCGTCGCCTCCTCCTCCCTGGTGGCCAGACACCCGGGTGTGGGCACAGCCAGCCTGTTCCGCAGAGACCTGCCCCCCCTGCACAGGAAGACGTCCACTGCGGCCCGGCCCCGCAAGCAGCAGGCTGTGGTGCCGCCTCtgcaggtgTCCCAGGTGCAGCCTCTACAGCAGTGTGCGGTGCTGTGTAAACAAAATACCGCTGTCAGCAAGAAAAAGGGCTCTGAGGCGGGCGCGGGGCAGGGCGGTGAGAACAGCCCCGTGGGGGACTGGGAGACGCAGCTGGACGCAGCGCTGCTGCAGAAGTCCCGGCTGCACATCCTGCAGGTCCTCAACACCGGAGACCTGCGGCTGCTCAAGGGCCTGCAGCAGATCGGGGACAAGAAGGCCAAACTCATCCTGGGCTGGAGGGAGATCCACGGCCCCTTCGCCCAGGTGGAAGACTTGCAGAAGATCGAAGGGATTTCAGCCAAACGCTTCACTTCCTTCATTAAGGCGAACATCCTCAGTACAATCGGCCACTGACAAcggactgatacactgactgtgCTGAGGGCTGGCTGTCCCCTGGAgctatagtgtgtgtgtgtgtggtgtgagaGCGTGTATATACAGAGTGTCTGGATGTAAGTGTGTAGAGCAGGCCAGCACAGTATTCTTCAGTACAGTGAGACAATGTTTAcctattatgtgtgtgtgagagagtataTAGTGTTTGTGGGTGGGGTGTATAAGTGAgtacgtatgtgtgtgtgtatgtatgaatcTGTTGTGTATGTGGTTAGCAGTGtgaatgttgtgtttgtgtagcagtgtgggagtgtgtgtgagggcaGGCCACACAGCAGCCCCATTGCACAGCCGTCAAAGTGATGCCCCACGTCCACAGTCCAGATGCCCCGACCACTGCTGCCCCCCAGCGACTGCAGCATCTCGCCTCGGGGCTGTCGGCCTGGGGTCTCTCGTGCTTTGTACATATTTCTCCTTTCtgcaacatttcagttttatatgcCAATAAACTCTTTTTGTGGTGTTATAGCTACATTAGTTTTATTGGTTCTGTTTGCATGGAATGAcacttgatgtattttttttattattgttttagtattttttttaaacttattaaaaggaaa

Function


GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0048592 eye morphogenesis biological_process
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0007420 brain development biological_process
GO:0001966 thigmotaxis biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005515 protein binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
K10403 KIF22; kinesin family member 22

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00012330 True 2562 mRNA 0.57 14 16292271 16300821

Neighbor


gene id symbol gene type direction distance location
AMCG00012326 NA coding upstream 3448 16287877 ~ 16288823 (+)
AMCG00012327 eif3c,LOC106904143,LOC100304733,LOC102226018,LOC105917567 coding upstream 65499 16212913 ~ 16226772 (+)
AMCG00012325 NA coding upstream 81627 16199003 ~ 16210644 (+)
AMCG00012319 NA coding upstream 122555 16164268 ~ 16169716 (+)
AMCG00012320 LOC108256206,LOC107686994,LOC108411041,LOC107690275,LOC107729189 coding upstream 137152 16142650 ~ 16155119 (+)
AMCG00012332 NA coding downstream 6588 16307409 ~ 16316260 (+)
AMCG00012331 NA coding downstream 46255 16347076 ~ 16353476 (+)
AMCG00012341 NA coding downstream 63690 16364511 ~ 16364896 (+)
AMCG00012337 NA coding downstream 66608 16367429 ~ 16378987 (+)
AMCG00012336 NA coding downstream 99669 16400490 ~ 16402197 (+)
G136051 NA non-coding upstream 96157 16193975 ~ 16196114 (+)
G136040 NA non-coding upstream 120176 16171739 ~ 16172095 (+)
G136025 NA non-coding upstream 188967 16102894 ~ 16103304 (+)
G135779 NA non-coding upstream 391650 15879134 ~ 15900621 (+)
G135768 NA non-coding upstream 480150 15811913 ~ 15812121 (+)
G136177 NA non-coding downstream 237241 16538062 ~ 16539149 (+)
G136191 NA non-coding downstream 265078 16565899 ~ 16566231 (+)
G136195 NA non-coding downstream 319434 16620255 ~ 16632264 (+)
G136236 NA non-coding downstream 528229 16829050 ~ 16831802 (+)
G136237 NA non-coding downstream 541746 16842567 ~ 16907105 (+)
G136076 NA other upstream 32939 16250248 ~ 16259332 (+)
AMCG00012318 ypela,ypel3,LOC103040367,LOC108411043,LOC103393221,LOC106600728,LOC105012807,LOC104942727 other upstream 109181 16176396 ~ 16183090 (+)
AMCG00012324 NA other upstream 149630 16104905 ~ 16142641 (+)
G135781 NA other upstream 361423 15911248 ~ 15930848 (+)
AMCG00012308 NA other upstream 602933 15684478 ~ 15689338 (+)
AMCG00012338 ppp4cb,ppp4c,LOC107571759,LOC107590569,LOC107755586,LOC107729194,LOC107567834,LOC107690278 other downstream 92878 16393699 ~ 16432813 (+)
AMCG00012348 NA other downstream 259828 16560649 ~ 16648562 (+)
AMCG00012349 LOC106588560,LOC106570198 other downstream 373458 16674279 ~ 16706193 (+)
AMCG00012351 NA other downstream 432605 16733426 ~ 16765108 (+)
G136245 NA other downstream 510885 16811706 ~ 16863593 (+)

Expression



Co-expression Network