AMCG00012338 (ppp4cb,ppp4c,LOC107571759,LOC107590569,LOC107755586,LOC107729194,LOC107567834,LOC107690278)


Basic Information

Item Value
gene id AMCG00012338
gene name ppp4cb,ppp4c,LOC107571759,LOC107590569,LOC107755586,LOC107729194,LOC107567834,LOC107690278
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16393699 ~ 16432813 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012338
actaCAGGCTGGGGTGTCAGTCCCCGAGGGGCCGGGTACCTGTTTGGCAGCGACGTGGTGGCCCAGTTCAACGCTGCCAATGACATCGACATGATCTGCCGGGCCCACCAGCTGGTCATGGAGGGGTACAAGTGGCATTTCAATGAGACGGTGCTGACTGTGTGGTCTGCGCCCAACTACTGCTACAGGTGTGGGAACGTGGCGGCCATCCTGGAGTTGGACGAGCACCTCCAGAAAGAGTTCATCATCTTCGAGGCGGCGCCGCAGGAGACGCGCGGCATCCCCTCCAAAAAGCCTGTCGCCGACTACTTTCTGTGA
>TU171045
accCAGAAAACactaCAGGCTGGGGTGTCAGTCCCCGAGGGGCCGGGTACCTGTTTGGCAGCGACGTGGTGGCCCAGTTCAACGCTGCCAATGACATCGACATGATCTGCCGGGCCCACCAGCTGGTCATGGAGGGGTACAAGTGGCATTTCAATGAGACGGTGCTGACTGTGTGGTCTGCGCCCAACTACTGCTACAGGTGTGGGAACGTGGCGGCCATCCTGGAGTTGGACGAGCACCTCCAGAAAGAGTTCATCATCTTCGAGGCGGCGCCGCAGGAGACGCGCGGCATCCCCTCCAAAAAGCCTGTCGCCGACTACTTTCTGTGACCCCGGCATGACCCTGCCCCCGGCCCCGCCCCTCTGGATACCTCCGTACGGCACAAACCTGAATACTCTCGACTCGGTCTCTCTgctctttccttccttccttccttccttccttccttccttccttccttcctctgtCTCACGTGTCACCTTCTACTTTTCTTTTACATCCTGCTGAGCTCTTACTGTGCCGCTCTTTCTTGACCGAGGACTAAACACACAACCGACAGAAGCTACTAGATCTAGACCAACTACTGCTTTTTCGGGCTCTCTGGCACACAGTGGGATTTAACGGAGGCATTTAAGATCTGCGTTTCTCCACCTGGGCATAAAAAGGACACATTTCTGCTCTTGTTGTCAATGCAGCCGTGCAGTCGGCCATGCGTACTTGGTTCACTTCTGTTTTGACCCCTCATCTGTCTTTCTCCCATATCCCTCTTGTCCTGTGctgtatcttttctttttttttttttaatgatttttggaTCTTTAAAATCTCCAGAAACTGTGAAAGAGAAACTGATAGACAGGGAATAGACGGCCTTAAGACCTGGGGCGGGCTCACCACCTCCCGAGCGGCAGGGATCCGATCAGTGTCGTGAGCATTAAAGTCCACCGCTGAACCCGTGCCATCTCCCGAGCTCGGCCTCCTGGTTTGAAAAGTGCATTGTCGTCCCTCTGGGGTTAAAGGTCAAAGTCTGAGAGAAGTAGAGAGGTGGCANNNNN

Function

symbol description
ppp4cb Predicted to enable metal ion binding activity; protein serine phosphatase activity; and protein threonine phosphatase activity. Acts upstream of or within determination of ventral identity and positive regulation of BMP signaling pathway. Predicted to be located in cytoplasm and microtubule organizing center. Is expressed in blastoderm; fertilized egg; and head. Orthologous to human PPP4C (protein phosphatase 4 catalytic subunit).
ppp4c Enables protein serine/threonine phosphatase activity. Involved in regulation of double-strand break repair via homologous recombination. Located in cytosol; nucleoplasm; and plasma membrane.

NR:

description
serine/threonine-protein phosphatase 4 catalytic subunit B

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012338 False 318 mRNA 0.60 2 16431673 16432087
TU171045 True 1055 TUCP 0.53 3 16393699 16432813

Neighbor

gene id symbol gene type direction distance location
AMCG00012337 NA coding upstream 14712 16367429 ~ 16378987 (+)
AMCG00012341 NA coding upstream 28803 16364511 ~ 16364896 (+)
AMCG00012331 NA coding upstream 40223 16347076 ~ 16353476 (+)
AMCG00012332 NA coding upstream 77439 16307409 ~ 16316260 (+)
AMCG00012330 NA coding upstream 92878 16292271 ~ 16300821 (+)
AMCG00012342 NA coding downstream 81046 16513859 ~ 16517621 (+)
AMCG00012343 aldoab,aldoaa,LOC107581735,LOC103381979,LOC107689930 coding downstream 97940 16530753 ~ 16537245 (+)
AMCG00012347 NA coding downstream 217520 16650333 ~ 16670699 (+)
AMCG00012350 NA coding downstream 280533 16713346 ~ 16715975 (+)
AMCG00012354 mex3a,mex3b,LOC107756899,LOC107671389,LOC107671388 coding downstream 379972 16812785 ~ 16818439 (+)
G136051 NA non-coding upstream 197585 16193975 ~ 16196114 (+)
G136040 NA non-coding upstream 221604 16171739 ~ 16172095 (+)
G136025 NA non-coding upstream 290395 16102894 ~ 16103304 (+)
G135779 NA non-coding upstream 493078 15879134 ~ 15900621 (+)
G135768 NA non-coding upstream 581578 15811913 ~ 15812121 (+)
G136177 NA non-coding downstream 105249 16538062 ~ 16539149 (+)
G136191 NA non-coding downstream 133086 16565899 ~ 16566231 (+)
G136195 NA non-coding downstream 187442 16620255 ~ 16632264 (+)
G136236 NA non-coding downstream 396237 16829050 ~ 16831802 (+)
G136237 NA non-coding downstream 409754 16842567 ~ 16907105 (+)
G136076 NA other upstream 134367 16250248 ~ 16259332 (+)
AMCG00012318 ypela,ypel3,LOC103040367,LOC108411043,LOC103393221,LOC106600728,LOC105012807,LOC104942727 other upstream 210609 16176396 ~ 16183090 (+)
AMCG00012324 NA other upstream 251058 16104905 ~ 16142641 (+)
G135781 NA other upstream 462851 15911248 ~ 15930848 (+)
AMCG00012308 NA other upstream 704361 15684478 ~ 15689338 (+)
AMCG00012348 NA other downstream 127836 16560649 ~ 16648562 (+)
AMCG00012349 LOC106588560,LOC106570198 other downstream 241466 16674279 ~ 16706193 (+)
AMCG00012351 NA other downstream 300613 16733426 ~ 16765108 (+)
G136245 NA other downstream 378893 16811706 ~ 16863593 (+)
G136255 NA other downstream 433724 16866537 ~ 16867448 (+)

Expression


Co-expression Network