AMCG00012340


Basic Information

Item Value
gene id AMCG00012340
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16415107 ~ 16432813 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012340
ATGCCGCGCGTCTCCTGCGGCGCCGCCTCGAAGATGATGAACTCTTTCTGGAGGTGCTCGTCCAACTCCAGGATGGCCGCCACGTTCCCACACCTGCggacggagagagaggggcgtCAATACAGACTGAACACTTCCCTCTCTTACACACTGATCTATTACCATATTACTGCTGCGGCCGTCGGTCTACCTGTAGCAGTAGTTGGGCGCAGACCACACAGTCAGCACCGTCTCATTGAAATGCCACTTGTACCCCTCCATGACCAGCTGGTGGGCCCGGCAGATCATGTCGATGTCATTGGCAGCGTTGAACTGGGCCACCACGTCGCTGCCAAACAGCACCCTGTCGTGTCACGATTGCAGACTCTACTCTTCGGCGGGGGGGGCAGCGTCTTCCCCTGCGTCTGCATCTCCTGCCTGCTGCTCCATCATCTCCTTGTAGCCTCGCTTGAAGAAGCCAgcctggagggagagaggagagagaaaaggatgAGCACCAGACTGTATTCGCCCAGTCTGTGTGTTGGCTCCAGCTGGGTTCTCCATGGTTCTGCTCCTGCCACGGGTGTCACTCTCTCAAGCGGTGGGCTGCTGTGTAAAAGGCCCTCTTCCCCTGGACGACCAGCCGGGTCCAACCCTAGACCAGTGATTATGGTTGAGCCCAGTGTGACCTTCAGCCCAGCCATAATCAGGTTGGACACTGACTGCATGAGTAGCAAGAATTTCATTGTAAAGGTCTGCTTTACCAACACCAAGGTCACCAAGGACAATATAGGTGACCTTCAAGTGACCATCAGCTACAACTTCACCCTGGATCGCACTCGGAGTAGATTCCGTGCTTACGTCACTCCTAAAAACCGCCAGATCcaaaacactttcacaatgGGACTGAAAGAGAAGTGTTTTCCTCACAACTTCGTTATTCCTGAATGTCCTGAAGACTCATTGGTGTTTTTGTCCAATGAATTGGAGTTCTCTGTGACTGGTCTGCCTTCCTCTGCATCCAAACTGAAACCCATTCTGGACCCCAGGACTCAGACCAAAAAATTCTACCAGGCGAGTCTCTTCAGTTGGCACTGCTCTCTCCTCTGTATCTCCCCCAACATATATATCTGTACTcTGGACTTTGAGAAACAGTGTGGAACTGACAACAAATGTATCGACGAACTTAAAGTCAGCTTCAACTTTTCAGGGGCATCAGAGCTGCAGGTGGGGATCACTCCTGTACTGAACCTGACGGTGTCCATACAGAATAGTGGAGAGAATTCTTACAACACCCACGTCATCCTAACCTATCCCTCCGCCCTGTCCTACCGCAGAGCTACTCTGCTGCAGTCCCAGTGTGATGAgggccagcagcagcagtcccCCAGCCGCCCCCCCGATGATCTCCTTCTTGTAGTCGTACACCTTAATGACCTCCAC
>TU171089
gtcaaacacagtattagtatggtgttcctaataatcctttagctgAGTGTATAACATgggcaaaaaacacaaaccaaattGCCAGCTGTACTCACTCactgtatctctctctgtgggcacacacattcaaactttgaagtgctttaatTGGAACGAAAAACAACAAGTGTTTTCAGTGCTATAATTTGAAAGATTTAGAATTGtttgaaactttattttctCACTCTTTAACTTTCTTGTCTGTATTGGTGAAACACTAAATAAACTGATAATGGTTAGAGatataaataagttatttaactgaaataaacatttattttgtgtgattttccCCCAGTGCTCAATCTTATGTCTTATTTCATATACAATGTCTTTGCtgtttaacaaatgtaaaataacgAACTGACTcgattcagatatttaaagttatatacataGGTTTCCCCTGTTTCCCTCACGGATGAACAGAAATGCTTGTAAGCTGCAGGAATTGAATTAAGTGCATTCAAAAACAATCCCTGTTCCTCATGGCATTTTACAATGTTAAATGGTTAAGGCATGTGTGTCAAACAGTGTGTTGCACTgatatataacaaatacatttgagtgTGTCAGTCCAGTGTGTCTGACAGCGTCTCTTTCCCCAGCGTATCGCTGCCAGTGACTTGCCAGGGACACTACAGTATTGGGGTCAGTCTTTGCATGGCACTATGGACCTCAGTGGAGATGGGATTCCTGAGCTGGCTGTGGGCTCCCAGGGGAAGGTACTGGTGCTCAGGTCCAGACCAGTGATTATGGTTGAGCCCAGTGTGACCTTCAGCCCAGCCATAATCAGGTTGGACACTGACTGCATGAGTAGCAAGAATTTCATTGTAAAGGTCTGCTTTACCAACACCAAGGTCACCAAGGACAATATAGGTGACCTTCAAGTGACCATCAGCTACAACTTCACCCTGGATCGCACTCGGAGTAGATTCCGTGCTTACGTCACTCCTAAAAACCGCCAGATCcaaaacactttcacaatgGGACTGAAAGAGAAGTGTTTTCCTCACAACTTCGTTATTCCTGAATGTCCTGAAGACTCATTGGTGTTTTTGTCCAATGAATTGGAGTTCTCTGTGACTGGTCTGCCTTCCTCTGCATCCAAACTGAAACCCATTCTGGACCCCAGGACTCAGACCAAAAAATTCTACCAGcTGGACTTTGAGAAACAGTGTGGAACTGACAACAAATGTATCGACGAACTTAAAGTCAGCTTCAACTTTTCAGGGGCATCAGAGCTGCAGGTGGGGATCACTCCTGTACTGAACCTGACGGTGTCCATACAGAATAGTGGAGAGAATTCTTACAACACCCACGTCATCCTAACCTATCCCTCCGCCCTGTCCTACCGCAGAGCTACTCTGCTGCAG
>TU171094
NNNNNTGCCACCTCTCTACTTCTCTCAGACTTTGACCTTTAACCCCAGAGGGACGACAATGCACTTTTCAAACCAGGAGGCCGAGCTCGGGAGATGGCACGGGTTCAGCGGTGGACTTTAATGCTCACGACACTGATCGGATCCCTGCCGCTCGGGAGGTGGTGAGCCCGCCCCAGGTCTTAAGGCCGTCTATTCCCTGTCTATCAGTTTCTCTTTCACAGTTTCTGGAGATTTTAAAGAtccaaaaatcattaaaaaaaaaaaaagaaaagatacagCACAGGACAAGAGGGATATGGGAGAAAGACAGATGAGGGGTCAAAACAGAAGTGAACCAAGTACGCATGGCCGACTGCACGGCTGCATTGACAACAAGAGCAGAAATGTGTCCTTTTTATGCCCAGGTGGAGAAACGCAGATCTTAAATGCCTCCGTTAAATCCCACTGTGTGCCAGAGAGCCCGAAAAAGCAGTAGTTGGTCTAGATCTAGTAGCTTCTGTCGGTTGTGTGTTTAGTCCTCGGTCAAGAAAGAGCGGCACAGTAAGAGCTCAGCAGGATGTAAAAGAAAAGTAGAAGGTGACACGTGAGacagaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaagagcAGAGAGACCGAGTCGAGAGTATTCAGGTTTGTGCCGTACGGAGGTATCCAGAGGGGCGGGGCCGGGGGCAGGGTCATGCCGGGGTCACAGAAAGTAGTCGGCGACAGGCTTTTTGGAGGGGATGCCGCGCGTCTCCTGCGGCGCCGCCTCGAAGATGATGAACTCTTTCTGGAGGTGCTCGTCCAACTCCAGGATGGCCGCCACGTTCCCACACCTGGCAGTAGTTGGGCGCAGACCACACAGTCAGCACCGTCTCATTGAAATGCCACTTGTACCCCTCCATGACCAGCTGGTGGGCCCGGCAGATCATGTCGATGTCATTGGCAGCGTTGAACTGGGCCACCACGTCGCTGCCAAACAGGTACCCGGCCCCTCGGGGACTGACACCCCAGCCTGtagtgtctgagagagagaggggagcgTAAGGTTAGACACAGTGGCATCTGAGCCAGGGACACAGGTTTACACGCACACTGACCGAACAGACACTGGAGTTAAACAATACTGTACTGAAAGAGTTAAACTGTCTGGATGCTGTGCTTGTGTTCACTTGTTTGCAAAAATAGAAAAGGTTTCTAAAATGAAGATTGTttacaaattatacacacacacccatatacacatgcatatatacacacatatatacagacaggtgacaaattaaagaaaaaaccaacacaaagtgtctcagtaaggtgttgggcaccacgagccccagaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012340 True 1425 mRNA 0.53 8 16415107 16432050
TU171089 False 1415 TUCP 0.42 6 16418192 16423900
TU171094 False 1363 TUCP 0.50 2 16431352 16432813

Neighbor

gene id symbol gene type direction distance location
AMCG00012335 NA coding downstream 53238 16355510 ~ 16361869 (-)
AMCG00012333 NA coding downstream 81602 16327201 ~ 16333505 (-)
AMCG00012334 NA coding downstream 92507 16318635 ~ 16322600 (-)
AMCG00012329 NA coding downstream 159629 16255275 ~ 16255478 (-)
AMCG00012328 NA coding downstream 227597 16184399 ~ 16187510 (-)
AMCG00012339 ppp4c,ppp4cb,LOC105024361 coding upstream 3983 16436796 ~ 16440071 (-)
AMCG00012345 NA coding upstream 13586 16446399 ~ 16476202 (-)
AMCG00012346 NA coding upstream 49137 16481950 ~ 16494681 (-)
AMCG00012344 NA coding upstream 62976 16495789 ~ 16510609 (-)
AMCG00012352 NA coding upstream 285949 16718762 ~ 16722047 (-)
G136112 NA non-coding downstream 123649 16282449 ~ 16291458 (-)
G136066 LOC102198857,LOC106578327 non-coding downstream 198036 16215401 ~ 16217071 (-)
G136041 NA non-coding downstream 243019 16171759 ~ 16172088 (-)
G136029 NA non-coding downstream 253909 16127696 ~ 16161198 (-)
G136024 NA non-coding downstream 314017 16100809 ~ 16101090 (-)
G136172 NA non-coding upstream 87073 16519886 ~ 16522448 (-)
G136175 aldoa,LOC108249121,LOC103373891,LOC107713203,LOC107581922,LOC107661747 non-coding upstream 93704 16526517 ~ 16537271 (-)
G136186 NA non-coding upstream 119217 16552030 ~ 16552281 (-)
G136203 NA non-coding upstream 209550 16642363 ~ 16642613 (-)
G136224 NA non-coding upstream 267176 16699989 ~ 16700204 (-)
G136125 NA other downstream 100714 16312721 ~ 16314393 (-)
G136070 NA other downstream 187864 16220126 ~ 16227243 (-)
G135988 NA other downstream 489954 15921604 ~ 15925153 (-)
G135957 NA other downstream 682973 15706934 ~ 15732134 (-)
G135857 NA other downstream 1620949 14725510 ~ 14794158 (-)
G136222 NA other upstream 265829 16698642 ~ 16699110 (-)
G136223 LOC105892008 other upstream 266662 16699475 ~ 16699791 (-)
AMCG00012365 NA other upstream 478679 16911492 ~ 16914685 (-)
AMCG00012372 tpm3,LOC106570192 other upstream 631743 17064556 ~ 17098725 (-)
G136378 NA other upstream 660686 17093499 ~ 17133907 (-)

Expression


Co-expression Network