AMCG00012342


Basic Information

Item Value
gene id AMCG00012342
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16513859 ~ 16517621 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012342
CCGGCGTGCAGGAGAAACAGGATCCGCGTTTTCACTGGAGATTAAACACGTTTCTGCATCCCTGCACCGAGCTGTCCAGATCGCCTGTTTCAATTATGAATGGCGTTGTTCGTTACAGGCAAATATTGAAATAGCAAAGTTATAGCAATCGTGTACTAAACCATTACgctagtgcagtacagtgctcGGGTTTACAGAGACTGGAGACTCGTTAACCATGCAGTTCATTTAAACAGCCAGACACTTTCTTGTATATGTGTTAAGATTTAATTCAACCACTTCTAAATCGTATTAATACGAACACGGGACTTTGGCAGAGATGTGCATGTGATAACTGACCTCTATTAGAAGTGTACtgTCATGGCAGGgtgaagggagggagagactgaCCACTCAttacagagagaaggagggCAGGAAGAGAATGGCACCCGTGGTTCTCCCTGCCTCTCAGCCGGTGTCTGTGGTGCCAGTGGCAGACCTGGCCCTGCCCCTGCCTGCCATCGTGATGATCGCAGTGTGTGCATACCTGCTGGTCTTACTGGCAGCTCTGTGGTGCCGccagtgtctgaagGCGCAGGGGCTGTGTCCGCTGTGCTGCCAGTGCAGTAAGGGCGCTCTCTGTGGCGACTGTGAGTACTGCATGGCATGCGTCGAGTCCTGTGACTGCAAAGTGCCCTCTGTCAGGGTCTGTCTGGACAACGCCTGCCCCGGCCCCTCCGGCCAGTGCTGCGCAAAGTGGGACTGTGCTTGTACCTGCCAGCCCCCCGAATGTCAGAGTTTCAACTGCTTGTGCTTCGAGATCAAGTTAAGATAGACTTAAGATAGAGCTAAACAACTACACCTGGATATATTACAGacttacatgtatttatattacagaTGTAATGAAAGGGTCATCTAGCTGGTTTATGTGCGGTACatgaaaaagttaaacaaaatgcCTTGTTTTATACTACAGACTGGAAACATATTTCAGCTGAAGTACAATAAATTGTGTCTTtatatatgtaggcctatatatacagtatacattgcTTAAGCTGTGttttaaggcattttcattacAAGACTATTGAACACTAGTGTGTCTTTATTCTCTAATGCAGTTCAAGGAAGCAGAtccaattaaattatacaatattgGAAGTTCGGCATTACAGTCCAATACAAAAGCCTTCGCCAAGTTTGGGCTTTTCAACAAGATGCTTTGAACAGGGGGCACAAAGTGACTTAATTACCATTACATGTGCCAGACATATGGTTTCTAATGGTACAAGGATTTACTGTAACTGTGATACAGCCAAATGGTACAGGAGTTATTGCAAAAATGCACTTGCGGTTATAATTTCTCTGCAAAATACAACTATTTTAGgtaacatttacacatttctgaTAATGAATGATCTTCTGAGTACTCTGGCAGCTGGTATATATAAGTTTAGCATGTAGAATATTTTGATGCTCGTCTTGTCGCTTTTGGTCCCAGTCAGTTCATTGGACTGGGATGGTTTTGTAATgatatgttttatgattgtttttaaatactaaaactatattttttccAGATTAAAACCATTGTTTCTAAGACATTGTTt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012342 True 1598 mRNA 0.43 5 16513859 16517621

Neighbor

gene id symbol gene type direction distance location
AMCG00012336 NA coding upstream 111662 16400490 ~ 16402197 (+)
AMCG00012337 NA coding upstream 134872 16367429 ~ 16378987 (+)
AMCG00012341 NA coding upstream 148963 16364511 ~ 16364896 (+)
AMCG00012331 NA coding upstream 160383 16347076 ~ 16353476 (+)
AMCG00012332 NA coding upstream 197599 16307409 ~ 16316260 (+)
AMCG00012343 aldoab,aldoaa,LOC107581735,LOC103381979,LOC107689930 coding downstream 13132 16530753 ~ 16537245 (+)
AMCG00012347 NA coding downstream 132712 16650333 ~ 16670699 (+)
AMCG00012350 NA coding downstream 195725 16713346 ~ 16715975 (+)
AMCG00012354 mex3a,mex3b,LOC107756899,LOC107671389,LOC107671388 coding downstream 295164 16812785 ~ 16818439 (+)
AMCG00012360 NA coding downstream 359756 16877377 ~ 16900435 (+)
G136051 NA non-coding upstream 317745 16193975 ~ 16196114 (+)
G136040 NA non-coding upstream 341764 16171739 ~ 16172095 (+)
G136025 NA non-coding upstream 410555 16102894 ~ 16103304 (+)
G135779 NA non-coding upstream 613238 15879134 ~ 15900621 (+)
G135768 NA non-coding upstream 701738 15811913 ~ 15812121 (+)
G136177 NA non-coding downstream 20441 16538062 ~ 16539149 (+)
G136191 NA non-coding downstream 48278 16565899 ~ 16566231 (+)
G136195 NA non-coding downstream 102634 16620255 ~ 16632264 (+)
G136236 NA non-coding downstream 311429 16829050 ~ 16831802 (+)
G136237 NA non-coding downstream 324946 16842567 ~ 16907105 (+)
AMCG00012338 ppp4cb,ppp4c,LOC107571759,LOC107590569,LOC107755586,LOC107729194,LOC107567834,LOC107690278 other upstream 81046 16393699 ~ 16432813 (+)
G136076 NA other upstream 254527 16250248 ~ 16259332 (+)
AMCG00012318 ypela,ypel3,LOC103040367,LOC108411043,LOC103393221,LOC106600728,LOC105012807,LOC104942727 other upstream 330769 16176396 ~ 16183090 (+)
AMCG00012324 NA other upstream 371218 16104905 ~ 16142641 (+)
G135781 NA other upstream 583011 15911248 ~ 15930848 (+)
AMCG00012348 NA other downstream 43028 16560649 ~ 16648562 (+)
AMCG00012349 LOC106588560,LOC106570198 other downstream 156658 16674279 ~ 16706193 (+)
AMCG00012351 NA other downstream 215805 16733426 ~ 16765108 (+)
G136245 NA other downstream 294085 16811706 ~ 16863593 (+)
G136255 NA other downstream 348916 16866537 ~ 16867448 (+)

Expression


Co-expression Network