AMCG00012345


Basic Information

Item Value
gene id AMCG00012345
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16446399 ~ 16476202 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012345
GCTAATAACGCCGTTTCAAAAGTGGATAGAAAGGGTCTGAGAGcgaattatttaaatgatttttaaatgctgattctgtgatataattatattattattcatgcttttgctgttgttcttgttttgttgctgtagtttttcaaatgtaaccTACTTGTGTGCTTAATAATAAggatagagagacagaaagacagattaGACTGCAAGATTGACACATGCAAACATACTAGAGCTAAATAGCACAATGTGGATATAGctagctagatagatagatgctGTATATAGATGTGCAGATAGATAACTTAGATAATAGATGCACCAGGAAGAACAATATGGGTGGCAGTGCTCTTGTGCACTGAACTCTGTGAGTGAGTTTGTATTTTCACTCTAGTGCACTAAACTGCAGCGGGTGTAGCAGTGCTGGGTTTGGATGCTCCAGCCCTGCACTGCTCTGAGCTTTTTTGGATCAGAAGACGCTCCTGTCTCCTCACGATGGACCCCCCACCCAGCCCCCTGTCTCGTGTGGGACAGACCTTCTGGGCAGTACTGggCTATGTGGTAGACACTATTGGGCGAATCTTTAAGACAGAACCTGCAATACAGAGTGATGAAGATGTCCCTCAGACCTCAGAGGACACAGGAAGTGACCCAGCCTCTGAAAAGATGTCTGAGGCCTTTGATAATGGTCAAGCTGAGGGAGAACCAGAGTGGCCAGAGTTTGCTGATGCTCTCCTACTCTCCGCAGCAACCAACACTGAGAGGAAAAACCTTGAAGATGCCTTCAGCTTTGAAACCCATCAGGGGATAAAGACTTCAAGGGGACACCAAGGAGATGGAATAGAAGACAATGGAAGTCACCCTGGCAATAAGTGGGAAGGAGGTGAAATCTTGGAGACAATTGCTATAAGTCGTTGTCATGAAGCTAGGTGGGATGCTGAAGATCTGAGTTTGGAAGAGGACAATACTGCCTTGGAATTTAGAGTCCACAGAGTTTCAGAGGGTGTGTGTGCCGATGAAGGGGAGAGTAAAAACTATGTCTTTGCAGCACAGGCTGTGGAAAAGAGGGAGTCTCCAGAGGGAAATGTGGAGTCTACAAGTTGGAGAAGACTTAGTAAATTGCCCAGTTCAGACAACAAGGCAAATGAGAAGCACAGCTGTCTCATTACAGCAGAGCCTCAACAGAAGAGAGACCCCATGGAGGAAACTGTTGAGCATACAGCCAGTCAGTCACACACAGCCAGCACGGAAACCACTCCGTTGTCTCCTACTGAGAAGAACAGAGTGCATAGCTTCAGTGCAGAGAAGACAGAGGAGTCTCTGGAGTCTACAGCCAGTGCAACACGCATTAAAGCACCTGGGGAAACAACCATTATTTTCACACCCAGTCCTTTGCCTGGCTCCAAAgttgaagagaaagaaagagaagagagagacatagaCCTCCTCAGTCACTCTGCAAAAAACGATGAAGAATTGATACCAGCGGGAATCTTACTATCTGATGAAAAACAGGACCAGCTGACCTCCGCAGATGAGACTATCATTAAAGAGGAAATTGAGGTATCCTTCACACCGGGTTTAGCTGAAGCTGGTCTGAAACAAACTCCTCATCACTTTACAGAGGAAGAAATAGAAGATGGGCAAGAGGTTGAAAATGTCACTTGCCAGGAAGAGGAACAGGAGCAGCTGGACTTAGTGAACATGTCTGAAGCAAACGACGGGCTGGAGATACTGGAGAAAGAGCAGACAGCAGCATTTGAGTCTAACAGGGTGATTGGAGACCAAGTGGAATTTGAAGCCAGCATCCACACTCTGAGATCTCAGGAGGAACACCACCAGTTGACTACAGAGACAGATTCCAgtgttaatgcaaaatgtttgaCACAATCAGTAACCCATGTGTTAGGTAAAGCAGCTCTTGGACTCACTCACTTCACAGAAGGTGTAACCAGTGAGGAAGCTTCAGAGCCCAGAGACTCTAAAGTAATGGTACCCACTGCAGGGAATGAGCAGGACCAGCTAAGCACAGACAATAAGGATATtcaagaagaagatgaagatgaagaaaaagaagaagtcACTCACAATCTATCTGTACAGCATGTAGGACCCAGAGCAGTAACAAGGGATCTGCAGTCTCAAGAGGAgcaggacacagagacagatcaTGTTGTGAAAGATGAGCTGAAGGTACCAGAGGAACTTACAACAGCAGCAGATATCACTAATAGTGAGACTGAAGACCTTGTACAAAATGAATCCAAGACATACAGTCTGGGATTTAAAGAGGACCAGCACCAATTGGCCATGCAGTTAGATTCAGATTATGAAGAGGAGGACAACATATCAGTTACATCAGGTTTAGATGAAGATACTTTGCCACAGACTTCATGCCACTCTACAGATGAGGGACAGGATGAAAAAGGTGGAGAATTCCCAAACCTTGAAGCTGTAAACCTACGAAAGTATGACATAGGGACAGTCTCTCTAGGATTTCAAGAAAAACAGGAGCAGTTGGACATGGAGTCTGAGTCTGATGCTAAAGATAAGCTAGAGACACATAAAGAAGGGCCAATATCAGTAGAAGTCACTGAAAGTGTGACTGTATTGTGtatgaaaaatgaaagtgaGACATACTGTCTTGAATCTAAGGAGGAACAGGACCAGTCAACCACAGGAGTTGAACAGGACACTGAAGAAGTCACTTTGGAAAAAACTGTGGACCATTCCGAAGGAGGAGAACCAACTCACACACCAACTACACAGCATGTAGAGTCAGTACCACATGATGAGTCTCAACAGGAACAGAACCAGACGAACACAGAGACTGAAATGAAATATGCTGATGAAGAGGTAAAAGAAGAATATGAAGAAATAGAAGGAGGAGGACAAGTCATTCATAAACTAAATGTAGCACATGTAGAGTCCAACGAAGCAAGGGAGCTACTGGTACAGTACCAGTGGACCACAGAGACCAAGTCTGATAGTAAAGAAGCAGACATGACCTTCACAGCAAAATCCATACAGGACATTACTACcaaaaaagaacacaaagaaCTAACAGGAGATGGAGTGGTTATTGAATCAGACCAGGAAACCTCAGAAAGGAAGACAGATTCGGGAGAAGAAATCACTAGCACTGAAACTATAGACCACAAAGAAACTCTGGACACAGTACAATCTGAAACAGTACTGGCTGGTGTGCTGTCCAAACAGGAACAAGATTCAGTGATGTCAAGGCTTGAATTTGATCTCAAAGATGAACTTCTGGATGTGGTAGCAAGTGACTCAGAAGAAGACAGCAGCGGATCTGAAACCAGAGACATTAAACACTTTGTAGAACCAAAAACAGTAACACAAACAGTTCATAAAGATGAACAAACTCAGCTGGCTAAAGATCTTGAGTCGAATATCAGTATAGAATATGAAGAAGAACACGAACTGATAACCAAGCGGCTTAATTCTGATAGCACAGATGAATTTCGGAATCTGGCACCAGCTTCATTAGCAGAAGAACACTTTCCTAGTActgaaattacagaccaaaGACCAACTCAAGACACTGTAAAACTTGTAAAACTTACATCTAAAACCGATAGTATAGAGTCTGAAGAGGGACAAGACCAATTCACCTTAGGAAGTGAGTTTGATACCAAAGATAAACTTATGGATGTATTATTAGCTCctaatgaagaaaatgtaaccAGTACTGAAACTACAGAGGAAAGACACACTCCAGACAGTGTGCCATATGTTGCAGTACCATCCAAAATAGCTTCAGAAGAGGAATTTAACACTGCACTTGATCTTGATGTTAAAGATGAAGAAACAAAGTTGATGTCACAGTTACAGGCTGATGTCATGTTGCCATCAACTTTGGACACTATAGAATCTGAAGCCGAGTCAGACAGACTAGGACCTGTACAGGAATATGACCAATTAAACACAGGAGCTGATCTTGAAGCCAGAGCTGAAATTAGGGATTTCTTAGAAGCTCCTGTAGCACAAGATATCACTAGTACTGAAATTACAGACCTAAGCAACATAACAGAATCCAGGATTATAACATTCAGTGCAGTATCTGAACAGGAACAAGAACAGTTGATCACAGGATTGGAAACTCATACCAAAGATGAACTTGTAAGGACTTATTTACCAGCAGGAGATGTCCCTAGCACAACAGTAGCTGTAGAATCACAAACCGTGACAATCAGTCTAGCATCTGGACACAATCAAGAACAACTGACAACAGCCCCTTTGTCTGACACCAAAGATGAATCAAATATTGAATACACCTCAGTACCAATTCGCCTTATGTCTGTGGAAAATCGAAACCAGCAGACCACAGGAGTTGGTGAACTTCATGAAATTCCTCAAGAAGAAGGCAACATTAGAAATAAAACTACAGACCAAATGTGGATTCCACCCCCTATGCAATCTGTCACTTTAGCAGACATAATAGTATCAGAAGAAGAACAAGCACAGTTGACTACAATGAGTGATGATGAGCTACAGGCTGAGACTGATTTCACACCAACCCTGGACACTGTGGAATCACAGCCTAAAGAAGAGCATGGAGAAGTAACCATGGGGCTTGAATTCACCGCTCTTGAGCCTGATACCAAAGATGAACCAAACAATCTATTTCCAGTTCCTCCAGAAAAAATACCTGCAGACCAAATACACATTATGGACAGAATAGAATCCAACATAGTTACCATCGGTCTGGGATCTGAACAGGAGCAAGAATTTTCTATCATAGGAATTGAGAGTAAAAGCAGAGATGAACTTCAGGAAGGGGGAATTGACACTTCAGAAGACCATATCATTTTAACTGAAACCACAGACCACAGAGAAGCTCTGGATGCTGCACAGTCAGTATCTGAACAAGAACAAGACAATGTGCCCACAGGACTTGATTTGGattacaattatgacatatcAGATATGGTAGAAGGGGCTTCAGATGAACAGCAGCACTTCAGCAGCAATGAAATTTCAGAACATGGAGATGTTGTGGACATTGTCGAATCGAAATCAGTGACAGACAATCTTATCTGTGAAAATGACCAGGAACAATTGACCCCAGTCCTTGAGCCTGATTCCAAAGATGACTTAAATGGAGAGTATAACACACTGACAGTCAGTCTAGGGGATGAAGGATATGAACTGATGTCTGGAGGGGCTGAGTCCTTTACTACTGAGTGTCTGGACCTACTAGCAGGCATGTCAGGAGGATACACCACTAGAACAGAAACAGCAgaccacaaacaaaatgtagacATGGTTGAACCTCTGTCAAGAACTGGGACTATTGTTTCTGAAGATGAACAAGACCCATTGATCTCAGAAGCTGAGTATAGTACCAAAGATGAAATTCAGGATTGGATAACAGCTCCTTCAGGAGAAGATGCCATTTGTGTACAAGCTACAGTCCAAGGACAAGATCTGGATGATGTAGAACATGAATCAATGACTGACAATGTTATATCCCTGGAAGTTAAACCTGAACTTCCTTCCCTTGCCACCCCATCTTCCCTGGAGCCAGTGGTGAAGCAAGAAGGTTTGATGAGTGAAGCAGCTGTTGACAGAGAAAGAGCAACTGAAGAAGTTGAACAAGTACAAGGGAACAAAACAGAGATAGGAATGGGGGAAATGATAAGCAAAGAAGTGGTGGGTACAGAAGAAGGAAACATTTTAGAACAAAATGAATCTGaaaaaggagaggaagaagatggaggaggaggaggggaactAATAGAAATAAATGCAAGAATAGGAATAATACGACCAGCAGTAGAAGAAAGGGGCAAAATGGATAGAATgatggaagaaaaagaagaggaaagagAAATAGCGGTAGTACAAGAAGCCACCACAGGAGAGAGACAATTAGGAGGAGAAGTAGAAGGACAAGGAGGAGAAGTTGTGGGGGAAAGGGAAGTAGagaaagaagatgaaaaagaagaagacaCCTCTTTGATATCTCCAGAAGTGAGAGAAGATGAAAAAGAGGAACTAGAGGCAAAAAGAGGGGCCGTAGAAAGCAAAGTAGAAGACACCAACCTAGAAGGAGAGCGAGAAGTGACAGGAGCAGAGGCAGAAGAAGGAGAATCTTTAGATTGTGGAGAACAAATAAAGGGAGAAATAAAAGGATTCGTAGGAGAGGAAATAGAAGAGgaaatagaagaagaagaagaagaatcctCCGAGCAGCCCCAAGACACAGTTGAGTGTGACAGTCCCTACTCCCCCCGTCTCCCAGCAGGTCTTGCAGACTTGCAGGTGAGGACTCCAGTTCTAGACTTCAGCATCCAGAAGTCTCGGATCGCCGTGAGGAACCAGCAGGCCCGCCGCCCCCTTGACCCCCGAAACCTGCTCAACAAGCCCAGCCTGCCCACAACAGAGGGCAGTGCTGAGGACGCACCAAAAGAGGAAGTGAAGACAAAATGGGCTCCCCCAGGGGGTGTGGCAGCGATGGGCTTCAAACTGCCAGttttgGGCAGTGAGTTCCCTGTcctgagaaagacagaaagaggaggtctgagagaggagagaggagaaacTGAGAGAACAACACAGAACAAGGCAGGGGTTGTGGAACCAACCTCAGGGAACAGTGCAGCTGAGGGACCACAGTTAGAGGACGCAACTAAAGAGGAAATTAAACCCAAATGGGCTCCCCCAGGGGGCATCGGGACCTTGGGCATCAAACTGCCAAGAGTCCATGCAGTTCTCgcctgtgtgttttttgggtACCCCTCCCCACTAGCCAGCACCCCGGTGTACTCTGATCAGCTTCAGCAAGACCATGGAGGGGTCATCCCACCTCAGACCGTCCCCCTCCCTCAGAAGACAGACGTGTCTGCGGCTTCCCTGCTACCCAAAGGAGGCGAGGAAAGGAGGCGtgagaggagaagaggagagaaaaataatgtttactgCCAAAAACTGGCAAGAAAAACACTGCTGCAGATCAGAGAGATACAGCACATTTATGACAGGCAGAGGATTCGTTTGGTAGCTGAAAGCTTGCAGTTCTATCAGCCCTACCTGCAGTCCAGGCAGTTGGAGAAGCTGGCTTTGAGGGTGGATCCCCGTCTACCCGGCAAACTACACACAGTGTCAGTGAACATCCGGGACATTCTACACCTCCTCAACCTCCAGTTCCAGTTGAGGGAATCTCGTCCCACTGTCCACATCAGTAACGATGTTTTGTCGCCAGTGGATGACTGGCAGTCCCACAGCCAGGTCGTGTTGCTGCTCAAAGGGCTGGGGAGGGCGCTGGAGAGGGCGGCTTTTCCAGTCGCAGTACCATCACTCGTCCAAAATGATGTTTTGCTAGACAAGCAGAATGACCGGCAGCAGTGTCAGCTCTGGACTGCATACCAGGACACCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012345 True 7401 mRNA 0.45 10 16446399 16476202

Neighbor

gene id symbol gene type direction distance location
AMCG00012339 ppp4c,ppp4cb,LOC105024361 coding downstream 6328 16436796 ~ 16440071 (-)
AMCG00012335 NA coding downstream 84530 16355510 ~ 16361869 (-)
AMCG00012333 NA coding downstream 112894 16327201 ~ 16333505 (-)
AMCG00012334 NA coding downstream 123799 16318635 ~ 16322600 (-)
AMCG00012329 NA coding downstream 190921 16255275 ~ 16255478 (-)
AMCG00012346 NA coding upstream 5748 16481950 ~ 16494681 (-)
AMCG00012344 NA coding upstream 19587 16495789 ~ 16510609 (-)
AMCG00012352 NA coding upstream 242560 16718762 ~ 16722047 (-)
AMCG00012353 NA coding upstream 288872 16765074 ~ 16773064 (-)
AMCG00012359 NA coding upstream 310802 16787004 ~ 16790899 (-)
G136112 NA non-coding downstream 154941 16282449 ~ 16291458 (-)
G136066 LOC102198857,LOC106578327 non-coding downstream 229328 16215401 ~ 16217071 (-)
G136041 NA non-coding downstream 274311 16171759 ~ 16172088 (-)
G136029 NA non-coding downstream 285201 16127696 ~ 16161198 (-)
G136024 NA non-coding downstream 345309 16100809 ~ 16101090 (-)
G136172 NA non-coding upstream 43684 16519886 ~ 16522448 (-)
G136175 aldoa,LOC108249121,LOC103373891,LOC107713203,LOC107581922,LOC107661747 non-coding upstream 50315 16526517 ~ 16537271 (-)
G136186 NA non-coding upstream 75828 16552030 ~ 16552281 (-)
G136203 NA non-coding upstream 166161 16642363 ~ 16642613 (-)
G136224 NA non-coding upstream 223787 16699989 ~ 16700204 (-)
AMCG00012340 NA other downstream 13586 16415107 ~ 16432813 (-)
G136125 NA other downstream 132006 16312721 ~ 16314393 (-)
G136070 NA other downstream 219156 16220126 ~ 16227243 (-)
G135988 NA other downstream 521246 15921604 ~ 15925153 (-)
G135957 NA other downstream 714265 15706934 ~ 15732134 (-)
G136222 NA other upstream 222440 16698642 ~ 16699110 (-)
G136223 LOC105892008 other upstream 223273 16699475 ~ 16699791 (-)
AMCG00012365 NA other upstream 435290 16911492 ~ 16914685 (-)
AMCG00012372 tpm3,LOC106570192 other upstream 588354 17064556 ~ 17098725 (-)
G136378 NA other upstream 617297 17093499 ~ 17133907 (-)

Expression


Co-expression Network