AMCG00012346


Basic Information

Item Value
gene id AMCG00012346
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16481950 ~ 16494681 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012346
CTTCACTTGATATGATGTTCAGGAATTTGAACAACAATGGCACTGACAGTTCTCCGCTCTCTGAATGTCCTCGCTCTGCTGCACACAGctctctctctttccatctcttcTTCTCCACAGGTCTGGGCCCTTCTGGGCTCTCCTGCCCTGCTCCCCTGCTCCTTTGACCCTCCAGGAAATGTGGGAGAGCAGCTCGAGGGGCTGGGGTTGTCATGGTCCTGGGAGGGGGGGGTCCTGGCATCCTTCGGGTTGGATGGGAACGTGAGCACCCCCGGAGTCAAGCTGCCAGAAGAGACTGACCTTAGAGGGGGCAACGCCTCACTGACACTGTTCAATACCTCTATCagccagcagggggagtatcaCTGCACTGTGTCTTACAACACCTCAGAGAGTGAGACCACCAACACTACACTGTATATACTGGCCCCGCCCACAGTGAGGGTCCTCCGCCCTTTGGTGTCCATAGGCAGGGAGAGTGTGGTTGAGTGTGAGGCTGAGGGTTTCTTCCCTCCGCCCATCCAGTTCTCCTGGCTCCGTGATGACATTGTTGAGAGGATTCTGGAAGCCATGCCGGCcaatcacagtgcagatggTAGCTACCGCGCCCTCAGCCAGCTCCACCTCATTCCTCAACCGGATGATGCCGGCCACAACTACAGCTGCCTGGTCAACCACTCGGCCCTGGCTTCACCGCTCAGAGAGGACTTTACTCTCATTTTCACACGTCGCCCCGTGGTCAGTGTGTCCTCAGCGTCGGTGTCCTCCGGGGAGCCCCAGACCCTCTACTGTCATGTCTCCGACTTCTTCCCCGAGGAGATCACCATTCGCTGGCTCCACAATGGCACCCTGATGGCCAATGGCGACCCCACCGCACCCCGCCCCCATGGCACCTTCAGCACCACGCGATACCTTACCCTCAGCCCGGCTCAGAGGGAAGCGGTGGGGGAGGTGCAATGTCAGGTCACCCAGCCTGGCTTTGAACCTCCAGCTTCCGACACTATAGTCCTCTCTGTGCCTGACACGGGTGGAGCAAAGGCGGAGATGTCAAAGGCAGCCAAGGCGGCAGTGGCTCTGATGATCATCTCCCTGGTCCTGGGCCGGCTGGTGGACAGAGTGCATGCCGCCTGGTTCGTCAATGACAAGCCCATCCCTGCTTACAGCCCTGCCAGTGAGGAGCTCCCCTCCGCAGCCCTCTCGTCCCAAGACCTGGAAGCCCCCCTGCTGCCCCCTGCCTCTGGTCGGGGGTACTATCGATTGAAGACACAGCGCCCCCTGCAGTCCAGCCGCCGGAAGGAGCAGCAGCTGCTTAGCCACCTTTGCTTCCGCCCCGACCTGCGTCTCCACCGGGGGGCGCTGTTCAAGTGCCAGGTGTCCTACCAGGGCAAGGAGAAGGTGGTGGAGGAGAGGGTGTCTGACCGGGTCACATTGCTGGCTGCCCCCAGTGTGTCAGAGATACGGGTGGTGCACAGTGACTGTGAAGGAGATGTGGTGTCCGGCACCAGTCGGGTCCATTTGGAGGTGGAGGCGAGCCGGTTCCACCCGGGGCTGGTGACGTTCCGCTGGTTCTGCGAGGGCGGGGAGCTGAGTCCCGCCCAGCCGGCCGCGGAGCCCCTGCCCGACACCGAAGGTTATTTCCGGGCCGTCAGTCAGTGCAAAGTCCCTGTGGAAGAACTGAGGCGACCCGGGTTCAAAGTATGGGTCACTGTGCATCATATGGCCCTGAAAGAGCCCATCACCAGGGAGAGCAGAGGGCTGGTGAAGAGGCCAGAGGTGTCAGATATTTCATGCTCCCCTGGGCAACCCCTCACCCTGGGCTGCCAGATTGCAGGATTTTACCCCTCCGACCTTGCGGTTTCCTGGCTGAGAAAGAGGGGCGAGGatgaggaggagctggagggcGTGGTCTCGCTGTGGGGGCCGATGCAGACAGACCCCCATACCTACAGGGCCAGTGCGCAGGCTGTGCTGACGGAGAaagggagcgagggagggagagaggagattGTGAGCAGCGACTCGGAGCTCACGGCGGAGATAGGCACCACAGTTGGAGAGCggagggaagaggagggaggagagaaaggaggagagGGCCAGACGGACAAAGGCGTTGCGAAGACGATAAGCTGTGGGGGtgtcagagagggaggagagagattgACCGTCCTGGCGGAGATCACACACCCTGCCCTGGCACTGCCTGTGTACAGGAGCTGGACTGGTAATACAGActtctga

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012346 True 2241 mRNA 0.61 10 16481950 16494681

Neighbor

gene id symbol gene type direction distance location
AMCG00012345 NA coding downstream 5748 16446399 ~ 16476202 (-)
AMCG00012339 ppp4c,ppp4cb,LOC105024361 coding downstream 41879 16436796 ~ 16440071 (-)
AMCG00012335 NA coding downstream 120081 16355510 ~ 16361869 (-)
AMCG00012333 NA coding downstream 148445 16327201 ~ 16333505 (-)
AMCG00012334 NA coding downstream 159350 16318635 ~ 16322600 (-)
AMCG00012344 NA coding upstream 1108 16495789 ~ 16510609 (-)
AMCG00012352 NA coding upstream 224081 16718762 ~ 16722047 (-)
AMCG00012353 NA coding upstream 270393 16765074 ~ 16773064 (-)
AMCG00012359 NA coding upstream 292323 16787004 ~ 16790899 (-)
AMCG00012357 LOC107726679,LOC107671462,LOC107592127 coding upstream 334353 16829034 ~ 16841186 (-)
G136112 NA non-coding downstream 190492 16282449 ~ 16291458 (-)
G136066 LOC102198857,LOC106578327 non-coding downstream 264879 16215401 ~ 16217071 (-)
G136041 NA non-coding downstream 309862 16171759 ~ 16172088 (-)
G136029 NA non-coding downstream 320752 16127696 ~ 16161198 (-)
G136024 NA non-coding downstream 380860 16100809 ~ 16101090 (-)
G136172 NA non-coding upstream 25205 16519886 ~ 16522448 (-)
G136175 aldoa,LOC108249121,LOC103373891,LOC107713203,LOC107581922,LOC107661747 non-coding upstream 31836 16526517 ~ 16537271 (-)
G136186 NA non-coding upstream 57349 16552030 ~ 16552281 (-)
G136203 NA non-coding upstream 147682 16642363 ~ 16642613 (-)
G136224 NA non-coding upstream 205308 16699989 ~ 16700204 (-)
AMCG00012340 NA other downstream 49137 16415107 ~ 16432813 (-)
G136125 NA other downstream 167557 16312721 ~ 16314393 (-)
G136070 NA other downstream 254707 16220126 ~ 16227243 (-)
G135988 NA other downstream 556797 15921604 ~ 15925153 (-)
G135957 NA other downstream 749816 15706934 ~ 15732134 (-)
G136222 NA other upstream 203961 16698642 ~ 16699110 (-)
G136223 LOC105892008 other upstream 204794 16699475 ~ 16699791 (-)
AMCG00012365 NA other upstream 416811 16911492 ~ 16914685 (-)
AMCG00012372 tpm3,LOC106570192 other upstream 569875 17064556 ~ 17098725 (-)
G136378 NA other upstream 598818 17093499 ~ 17133907 (-)

Expression


Co-expression Network