AMCG00012348


Basic Information

Item Value
gene id AMCG00012348
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16560649 ~ 16648562 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012348
ATGGCGGGGGCCGCTTCAGCTACTGTAGCTACAAAAGGGGCCAGTTCAGTTGCTGACAGCATGCCTCCCAAGGTGACACCCAGTCCTGCTCCTGTAGCTCCTGCCCCAGCTGCCGCCCCTGCTGTGCCAACCACTGCAGCCCCAATGCCCACCCCCGATGTCAGCAACACTAATCCTCCCACTGCCAGGATCACCTTTGTTAGGAACTCGATGGAATTCTCTGCTTTTTCTGTCGCCTTGTCACAGTATCGGGTGGGCAATCCAGGCCGCCTTCAAGTCCGGGGGGTCACTGACAGCATCCCCATCAGGCCGCAGGTGGTGCGATCCCTCATTCAGACCTTAAAACTCACCTGGGACACAAGGCAGCAAACGCAGACAGGCCTGACTCCAGGCCTGCGGGATCATGCCCTCACCCCCCTCACCCAGCGCATCTGGGAGACGGCGGCCAGGAGCCGAGCGAAGATGCTGTGGACCCTCTGCCACCTGGAGGGGTTTGCGGCCGCAGTGGGCGCCTCCGTGTTGCTCGGCTCCAGGGCCCCTGCAGGCATGAGGGAGGGCAGACTGGCGCTCAGCGGCTCCAGCACCACGGGCAGAGACGCCCTCTTGTCCCCGACATCACTGGGTGCTGTCTGGGCGCTGGCCTGCCGCTCCCTGGCCCCTCTGTGCTCTTGTGGGCCGCCGCTCTCGGGGCTGCGCAGCTCTGGAACGAATTTTGGGGAGGACTTTGACATCAACGTGAATGCTGCTCTGCAAGTGATGGCCACCAACATCATTAGGCTGGCGCCAGAGCACTCAAAGCTCCTCTTCTACCAAAATGAGATGGAGGAAGTAACCAGCGCACTAAATATCGCCAAGGGTGTGGGACTCAACTGCAACGAAGATGTCAACCCACAGCTGTACAGCCTGCAGAAGAAGGGGCGTCTGCAGAAGATTGACGGCAGCCCCCCAAAGTGGTCTCTAAAGCAGAGGGAGCCGACCCAGGAACCACAGACAAGCAATACGCTCCCCAAGTCCTCTGATGTAGACCCATCGCTTGTGCACAGTTTACTGCGAACAGATAGAGGAGAAACGGCCTTCGAAATTCGCAAGAAATCGAAGGCCAAACCCAGAAGTGTGAAAAAGCAGCTGTACGATCTGCTGCCGAGAGGGGATGTGGAGAAGAGTGAGGGCAGCTGTGTGGAAGAGGAGTGA
>TU171165
ATCCAAGAGACGGAACCGGAAAGGGGGCGGGAAGTTTTGTATGGTCCAACACCGTCACGGCAAAGGCTACTGAAGAGGACACACACAACCATTGACTGCcacatatacactaccgttcaaaaggttggggtcacttagaaatgtccttgtttgtGATAGAAAGGCAcatttgtccattaaaataacaaactgaTCAGAAAtgcagtgtagacattgttaatgttgtacatgatttgtaatggaatatgtacataggcgtacagaggcccattatcagtaACCATCAGTCGTGGGATCTaatgtgtttgctaatccaagtttatcattttaaaaggctaactgatcattagaaaacccttttgcaattgttagcacagctgaaaagaAGCAAtcaaactggccttctttagactagttgagtatctggagcatccgcaattgtgggttcaattTACAGGCTCAagatggccagaaacaaagaactttcttctgaaactcgtcagtctattcttgttctgagaaatgaaggctattccatgcgaggaattgccaagaaactgaagatctcgtacaacgcagtgtactactcccttcacagaacagcgcagactggctctaaccagaatagagaGAGGAgcgggaggccccggtgcacaactgagcaagaggacaaatacattagagtgtccaGTTTGAGAAAtggacgcctcacaggtcctcaactggcagcttcattaaatagtacccgcaaaacaccggtctcaacgtcaacagtgaagaggcgactccgggatgctggccttctagcaGTCTTGGATTCAGAGCCGGGGACTCAAAAGGCAGAGGCCAAGGTTGAGGCCGGGGAATTAAAAGGCCATGGACAAGGTCAAGGCCGGGGACTCAAAAGGTCGAGGCCGGGGACTCAAAAGGCGGAGGCCAAGGTCGAGGCTGGGAGCCACAAGGCCAAGCTGAGGCCAAGGCCTGGAGCCTTTTAAGGCAAGCTGGTCAAGGTCAATGATAAGAAACTTTTACAGGTAAAGGCCAGAGTCGTGCAGTTTATCATTTGGGTTAGGTGTAGACAGTTGTAATCAGATTTGTACAACTGTAGAAGAGCTCttttccaaaatgaaaagtacagtaaatgtaaaccCTTTACTCCATCAGAGTAGAAATCTCAGCAATTTAAATGATGACCAGGCATTCATTCAGACCCACACTGCTCACAAGATAAACCTGCACTTTACATAGTTTCACACGACTCCCATTCTTGCTCTGGATGCTCACATTTAAGCAATAGTTAGAATGCTTGCATATGttgtagcaaaataaaaaatgaaaatggctaatcagtgcaaaatattgtataaattcCTAACAATACTTTGGATTACTGTaaaaattaataatcataatcaataAGTAATATTTGGCATTCAATTCCCATTTCTCTccttataaaataattgcatttaataattggACAATATTGAATGTGATCAATTATTTGTCTAATATTTTACACgtttaaacaaatattgcattggctttgtattattagattaaTGATATGGCATTTATTATCATGAAATTGAATCGTATGGTGTCTTATTACTCATTAATAGTAGTACTGTAGTTATTGTAATTGTCTTTGCCACTTGCTCTAACTAGCACTAatgttattgtgtattgtaatgtattgtatttaataccttgcaattattttattctgtatgtatattttgaatgtaagtgtaagtcaccctggacaaggtaatctgtttagaaataaataataatcattattagaTTAACGATACTGTTATGAACGAAACAAACCACTCTGTTGCAACTATCGGATTAgatgtatacattataatcGGTGTAGACAACATTAGTCTATCACACCATTTTGCAATGCCGttccataccctgtggacggcgctttATTGGAGCCAATTACCTCCtacagcaggacaatgacccaaagcacagctccaaactattcATTAACTATTTGGGGAAGAAGCACTCAGTcaataatggagtggccagcacagttgccagatctcaaccctattgagctgttgtgggagcagcttgactgtGGTACataagtgcccatcaagccaatccaacttgtgggaggtgcttcaggaagcatggggtgaaatctcttcagattacctcaacaaattgacaactagaatgccaaaggtctgcaaggctgtaattgctgcaaatggaggattctttggcaaaagcaaagtttgaaggacacaattattatttcaattaaaaaaatatatatttctaacctatgattatatttctcattttatcagactcatttcatgtatgtttttatggaaaacaaggacatttctaagtgaccccacacttttgaacggtagtgtatataaacTGAAAAATCTTCACATTCAAGAAAGCTTGACACACCAGTTGAACCAGACCTAGATCCCCAAACAATGTCTTCAGGGAAGAAAGACGTGACCGACGGAAAGGACAAGAGTTTGGAGGAACGGATTATTGCCTTTTTAATACAGATGGAGGAAGTAACCAGCGCACTAAATATCGCCAAGGGTGTGGGACTCAACTGCAACGAAGATGTCAACCCACAGCTGTACAGCCTGCAGAAGAAGGGGCGTCTGCAGAAGATTGACGGCAGCCCCCCAAAGTGGTCTCTAAAGCAGAGGGAGCCGACCCAGGAACCACAGACAAGCAATACGCTCCCCAAGTCCTCTGATGTAGACCCATCGCTTGTGCACAGTTTACTGCGAACAGATAGAGGAGAAACGGCCTTCGAAATTCGCAAGAAATCGAAGGCCAAACCCAGAAGTGTGAAAAAGCAGCTGTACGATCTGCTGCCGAGAGGGGATGTGGAGAAGAGTGAGGGCAGCTGTGTGGAAGAGGAGTGAGAAGAGGTTTCTGCAGGACTATGACTCGAGTCCCTTGGCACAGGGGCTTATGGCTTAAGGCAAGACGAAAACTGGAAGACGTCTTCTTTGCTGTGAAGGTTGTAAAGCTTATGAGGtaaagcaattgtatttttttatatacatctaaTCCACTTTGTAGGATACTTGTACATTTCTGATACTTTACTA
>TU171166
ATCCAAGAGACGGAACCGGAAAGGGGGCGGGAAGTTTTGTATGGTCCAACACCGTCACGGCAAAGGTAATGCGgacaaaaaacaatgaacaacaacaataataatctgtatttaTCTGAGCAGTAATAGTCCGCTAAACACTCATTCACACTAGAAAAGTGGTTATTGAACTGCATTAGTGGATATGACACGACTTTGTACGTGTGCTTATGtcagtatatatacatcttCTATATGTTTATATTCATCATATCTGGCAAAATCAAAAAGCGACGGGGTTTTGCGTTAGTACAACGGACGACAAAAAAGGCTACTGAAGAGGACACACACAACCATTGACTGCcacatatacactaccgttcaaaagGTTTCTGCAGGACTATGACTCGAGTCCCTTGGCACAGGGGCTTATGGCTTAAGGCAAGACGAAAACTGGAAGACGTCTTCTTTGCTGTGAAGGTTGTAAAGCTTATGAGGtaaagcaattgtatttttttatatacatctaaTCCACTTTGTAGGATACTTGTACATTTCTGATACTTTACTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012348 False 1191 mRNA 0.59 5 16560649 16647362
TU171165 True 3125 TUCP 0.41 3 16643757 16648562
TU171166 False 550 lncRNA 0.40 3 16643757 16648562

Neighbor

gene id symbol gene type direction distance location
AMCG00012343 aldoab,aldoaa,LOC107581735,LOC103381979,LOC107689930 coding upstream 23404 16530753 ~ 16537245 (+)
AMCG00012342 NA coding upstream 43028 16513859 ~ 16517621 (+)
AMCG00012336 NA coding upstream 158452 16400490 ~ 16402197 (+)
AMCG00012337 NA coding upstream 181662 16367429 ~ 16378987 (+)
AMCG00012341 NA coding upstream 195753 16364511 ~ 16364896 (+)
AMCG00012347 NA coding downstream 1771 16650333 ~ 16670699 (+)
AMCG00012350 NA coding downstream 64784 16713346 ~ 16715975 (+)
AMCG00012354 mex3a,mex3b,LOC107756899,LOC107671389,LOC107671388 coding downstream 164223 16812785 ~ 16818439 (+)
AMCG00012360 NA coding downstream 228815 16877377 ~ 16900435 (+)
AMCG00012366 NA coding downstream 329010 16977572 ~ 16984994 (+)
G136177 NA non-coding upstream 21500 16538062 ~ 16539149 (+)
G136051 NA non-coding upstream 364535 16193975 ~ 16196114 (+)
G136040 NA non-coding upstream 388554 16171739 ~ 16172095 (+)
G136025 NA non-coding upstream 457345 16102894 ~ 16103304 (+)
G135779 NA non-coding upstream 660028 15879134 ~ 15900621 (+)
G136236 NA non-coding downstream 180488 16829050 ~ 16831802 (+)
G136237 NA non-coding downstream 194005 16842567 ~ 16907105 (+)
G136286 NA non-coding downstream 263673 16912235 ~ 16914695 (+)
G136297 NA non-coding downstream 308127 16956689 ~ 16957295 (+)
G136295 LOC103039167,LOC108433880,LOC103372036,LOC105891956,LOC108256189,LOC108256188,LOC106605297,LOC104942599 non-coding downstream 308896 16957458 ~ 16978213 (+)
AMCG00012338 ppp4cb,ppp4c,LOC107571759,LOC107590569,LOC107755586,LOC107729194,LOC107567834,LOC107690278 other upstream 127836 16393699 ~ 16432813 (+)
G136076 NA other upstream 301317 16250248 ~ 16259332 (+)
AMCG00012318 ypela,ypel3,LOC103040367,LOC108411043,LOC103393221,LOC106600728,LOC105012807,LOC104942727 other upstream 377559 16176396 ~ 16183090 (+)
AMCG00012324 NA other upstream 418008 16104905 ~ 16142641 (+)
G135781 NA other upstream 629801 15911248 ~ 15930848 (+)
AMCG00012349 LOC106588560,LOC106570198 other downstream 25717 16674279 ~ 16706193 (+)
AMCG00012351 NA other downstream 84864 16733426 ~ 16765108 (+)
G136245 NA other downstream 163144 16811706 ~ 16863593 (+)
G136255 NA other downstream 217975 16866537 ~ 16867448 (+)
G136258 NA other downstream 223276 16871838 ~ 16875600 (+)

Expression


Co-expression Network