AMCG00012354 (mex3a,mex3b,LOC107756899,LOC107671389,LOC107671388)


Basic Information

Item Value
gene id AMCG00012354
gene name mex3a,mex3b,LOC107756899,LOC107671389,LOC107671388
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16812785 ~ 16818439 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012354
ATGCCTAGCCTGCTGGTTCTCGCAGGGATCATGGAGAAGAACGGGGGCTACGGCGGGGTTTTGGCCGGCTCCGGCTTCGGCACCGACGGGCTGCTGGTGCCGCCCGaccaggaggaggaagaggaggacgagTCCCGGGCGCTGCGGGTCGCGCTGGGCCAGCTGTCGCTGCTGGGGCTCGGGGACGCCGAGGACGGCGGAGGCGCTCCGGCAGCCACGGGGGCGCAGGACCGgagcaacaacaaccaccacgcTGGCggaggcggcggcggcggcggggaCGCGGCGCTGCTGCACGGCAAGAGCAAGATGTGCGTCCTGTACGAGCCGGGCGCCGCGGAGACCAAGGGACGGGGCTGCAACATCACCGAGTGCGTCCCCGTCCCCAGCTCCGAGCATGTGGCCGAGATAGTGGGGAGACAAGGGTGTAAGATCAAGGCCCTGCGCGCCAAGACCAACACCTACATCAAGACGCCGGTGCGGGGGGAGGAGCCGGTGTTCCTGATCACCGGGCGGAAGGAGGACGTGGCGCTGGCTCGCCGCGAGATCATCTCCGCGGCCGAGCACTTCTCTATGCTGCGGGCGTCGCGCAACAAGCTGGGCGTCTCCTTCAGTGGCTCGCCGCCGGCGCTGCCTGGCCAAACCACCATCCAGGTGCGGGTGCCCTACCGCGTGGTGGGGCTGGTGGTGGGGCCCAAGGGCTCCACCATCAAGCGCATCCAGCAGCAGACCTGCACCTACATCGTGACCCCCAGCCGCGACCGTGACCCCGTCTTCGAGATCACTGGCTCCCCCGGCAACGCCGAGCGCGCCCGTGAGGAGATCGAGGCCCACATCGCCTTCCGCACCGGCGGCCTGCACGACCTCAACAACGAGAACGACTGTCTGGGGCCCGAGGGGGGCCTGCTGGAGAACCGGCTGCAGCAGGTGTGGGGCCTGCAGGGCCACCGCAAGCCTCTCTCCAGCAGCTACCGGCAGAACAGCGGCTTCCCGGAGGGCCTGACCAGCAACGGAGGCGGCGGCGGCAACGGGGGAGGGATCTATAAAGGCGACTTCCCCAACGACAAGCCCTGCTCCTACTTTGGCTCCGATGGGACCCCGTGCTGGGGCGACCCCGACTACCCCAAGCAGCCGGCATTCTATGCCCAGCAGCGGTCCAAGAGCTTCGGCGGGCTGCCCCTGCCCCTGGCCAGACTGTCTCCGGGGCTGCAGGAGCCCTGCGCCAACAATGCCACGCCCCCGCACGCCCAGGCCCGGCGGGCGCACAGCGAGCCCATCTCCGCCAGCACCGTGTTCCCCTCGCGGATGGCCGTGCCCGACTCGCCGCCCGCCGCCCGGGACTGCATGACCTGCTTCGAGAGCAAAGTGACCGCCGCCCTAGTGCCGTGCGGCCACAACCTCTTCTGCATGGAGTGCGCCATCCGCATCTGCGAGCTGGCACACCCCGAGTGCCCCGTGTGCCACACACTGGTGACGCAGGCCATCCGAATATTTTCTTAA

Function

symbol description
mex3b Predicted to enable RNA binding activity and metal ion binding activity. Is expressed in ciliary marginal zone; deep blastomere; and superficial blastomere. Orthologous to human MEX3B (mex-3 RNA binding family member B).
mex3a Is expressed in brain; olfactory epithelium; optic tectum; and retina. Orthologous to human MEX3A (mex-3 RNA binding family member A).

NR:

description
PREDICTED: RNA-binding protein MEX3B-like

GO: NA

KEGG:

id description
K15686 MEX3, RKHD; RNA-binding protein MEX3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012354 True 1500 mRNA 0.69 2 16812785 16818439

Neighbor

gene id symbol gene type direction distance location
AMCG00012350 NA coding upstream 96810 16713346 ~ 16715975 (+)
AMCG00012347 NA coding upstream 142086 16650333 ~ 16670699 (+)
AMCG00012343 aldoab,aldoaa,LOC107581735,LOC103381979,LOC107689930 coding upstream 275540 16530753 ~ 16537245 (+)
AMCG00012342 NA coding upstream 295164 16513859 ~ 16517621 (+)
AMCG00012336 NA coding upstream 410588 16400490 ~ 16402197 (+)
AMCG00012360 NA coding downstream 58938 16877377 ~ 16900435 (+)
AMCG00012366 NA coding downstream 159133 16977572 ~ 16984994 (+)
AMCG00012369 NA coding downstream 175040 16993479 ~ 16997064 (+)
AMCG00012367 NA coding downstream 204220 17022659 ~ 17029088 (+)
AMCG00012370 NA coding downstream 223756 17042195 ~ 17051046 (+)
G136195 NA non-coding upstream 180521 16620255 ~ 16632264 (+)
G136191 NA non-coding upstream 246554 16565899 ~ 16566231 (+)
G136177 NA non-coding upstream 273636 16538062 ~ 16539149 (+)
G136051 NA non-coding upstream 616671 16193975 ~ 16196114 (+)
G136040 NA non-coding upstream 640690 16171739 ~ 16172095 (+)
G136236 NA non-coding downstream 10611 16829050 ~ 16831802 (+)
G136237 NA non-coding downstream 24128 16842567 ~ 16907105 (+)
G136286 NA non-coding downstream 93796 16912235 ~ 16914695 (+)
G136297 NA non-coding downstream 138250 16956689 ~ 16957295 (+)
G136295 LOC103039167,LOC108433880,LOC103372036,LOC105891956,LOC108256189,LOC108256188,LOC106605297,LOC104942599 non-coding downstream 139019 16957458 ~ 16978213 (+)
AMCG00012351 NA other upstream 47677 16733426 ~ 16765108 (+)
AMCG00012349 LOC106588560,LOC106570198 other upstream 106592 16674279 ~ 16706193 (+)
AMCG00012348 NA other upstream 164223 16560649 ~ 16648562 (+)
AMCG00012338 ppp4cb,ppp4c,LOC107571759,LOC107590569,LOC107755586,LOC107729194,LOC107567834,LOC107690278 other upstream 379972 16393699 ~ 16432813 (+)
G136076 NA other upstream 553453 16250248 ~ 16259332 (+)
G136255 NA other downstream 48098 16866537 ~ 16867448 (+)
G136258 NA other downstream 53399 16871838 ~ 16875600 (+)
G136296 NA other downstream 144891 16963330 ~ 17000089 (+)
AMCG00012374 NA other downstream 307574 17126013 ~ 17129339 (+)
G136341 NA other downstream 308716 17127155 ~ 17264404 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_01045587_01050470 MEX3A coding CI01000027 null 1043392 ~ 1050863 (+)