AMCG00012356 (ubqln4,LOC105012604)


Basic Information

Item Value
gene id AMCG00012356
gene name ubqln4,LOC105012604
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16863346 ~ 16875615 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012356
TCAGTGACTCAGTGATTATAGGAGGAGTAAAGATGGCGGACAACAGCAGCACGGATCCcgtgaacaacaacaataataaaaataccgCCTCGGAGGGGAACATTATCAGGGTCACGGTGAAAACCCCGAAGGACAAAGAGGAGATCGCCATCGGGGAGGACGCGTCGGTGACACAGTTTAAAGAGGAGATCTCTCGGAGGTTCAAAGCCAAGCAGGACCAGCTGGTGCTTATCTTCGCCGGGAAGATCCTGAAAGACGGGGACACCCTGAACCAGCACGGCATCAAGGATGGCCTCACTGTACACCTAGTCATCAAGACCGCACACAAgGCCGCCGACGGTGCCGCTCCCCAGCCCTCCGCCTCCTCCAGTTCCTCCACCCCCCaggtgagcagcagcagcagcgccagTCCGGGCAGCCCCAGCCCGGCCGTCAGCTCCTCGCCGGCAGGCTCCACCAGCAGCGCCCCGCCCACGGCCCCCGCACAGCCCGCCAGCATCCTCACGGGCTTCGGGGACCTGGGCAGCCTGGGCGGGCTGGGCATGGGCTCGGCCAACTTCATGGAACTGCAGCAGCAGATGCAGCGGCAGCTCATGTCCAACCCCGAGATGCTCTCCCAGATCATGGAGAACCCGCTGGTGCAGAACATGATGTCCAACCCCGACCTGATGCGCCAGATGATCACGATGGAGCTGGCGAGGAACCCGGCCATGATGCAGGAGATGATGAGGAACCAAGACCGGGCACTTAGCAACCTGGAGAGCATCCCAGGGGGCTACAACGCCCTGCGCAGGATTGGCAACACGGACAGTTCGGGCGTGCAGCCCTCCAGGATGGAGAACCGGGAACCCCTGCCCAACCCCTGGGGCCCCCCCAACACAGCCGCCCCCACCTCCAGCACCGAGGCAGGGGGCAGTACCACCTCCACCGCCCCCAGCCAGAGTGGGACCACCGCCAGCGTGTCCAACCCCCTGGGCATCAACGCCGCCAGCCTGGGCAACGGCATGTTCAACAGCCCGGGCATGCAGAGCCTCCTGCAGCAGATCTCCGACAACCCCCAGCTCATGCAGAACATGCTGTCGGCCCCCTATATGCGCAGTATGATGCAGTCCCTGGCGCAGAACCCAGACATCGCGGCGCAGGTCATGATGAACAACCCTCTCTTCGCTGGCAACCCTCAGCTCCAGGAGCAGTTCAGGCACCAGCTACCCGTGTTTCTGCAGCAGATGCAGAACCCAGAAGCGCTGTCTGTGATGACAAACCCCCGGGCCATGCAGGCTCTGCTGCAGATCCAGCAGGGGCTCCAGACACTACAGACCGAGGCCCCGGGACTCATGCCTAGCCTTACTCCTGGCGGTTTCCCGACCTCCCCCCTGCCCACGGGAGCGCCGGTCATCCCAGAGACCCCCACCTCCACCGGGGGGGTCCCGACCACGGGCGCCCCCCCCACGCCCGGCACCCCGGCACCCAGCTCGGCCCAGCAGCAGCTCATGCAGCAGATGTTACAGATGTTCGCCGGAGGCAGTGCTGGAGGAACCCCGAGCCAGACCCCGGAGGTGCGGTTTCAGCAGCAACTGGAGCAGCTCAGCGCCATGGGCTTCATCAACCGTGAGGCCAACCTGCAGGCCCTGATCGCCACGGGCGGCGACATCAATGCCGCCATCGAGAGACTGCTGGGCTCCCAGCCCTCCTAAACGCAGGCTGCCGGGACTGTGGGAAgggaagagggggtgggggagggagggagagagagagaga

Function

symbol description
ubqln4 Predicted to enable polyubiquitin modification-dependent protein binding activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol. Is expressed in muscle and trunk. Orthologous to human UBQLN4 (ubiquilin 4).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: ubiquilin-4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012356 True 1758 mRNA 0.64 11 16863346 16875615

Neighbor

gene id symbol gene type direction distance location
AMCG00012355 NA coding downstream 4940 16854236 ~ 16858406 (-)
AMCG00012358 NA coding downstream 10773 16842567 ~ 16852573 (-)
AMCG00012357 LOC107726679,LOC107671462,LOC107592127 coding downstream 22160 16829034 ~ 16841186 (-)
AMCG00012359 NA coding downstream 72447 16787004 ~ 16790899 (-)
AMCG00012353 NA coding downstream 90282 16765074 ~ 16773064 (-)
AMCG00012363 NA coding upstream 39906 16915521 ~ 16916696 (-)
AMCG00012362 NA coding upstream 47191 16922806 ~ 16923984 (-)
AMCG00012361 NA coding upstream 69690 16945305 ~ 16951831 (-)
AMCG00012364 LOC108433880,LOC103372036,LOC108256189,LOC108256188,LOC103039167,LOC104942599 coding upstream 84768 16960383 ~ 16965871 (-)
AMCG00012371 NA coding upstream 110247 16985862 ~ 16990109 (-)
G136226 NA non-coding downstream 151713 16709574 ~ 16711633 (-)
G136225 NA non-coding downstream 158533 16704588 ~ 16704813 (-)
G136224 NA non-coding downstream 163142 16699989 ~ 16700204 (-)
G136203 NA non-coding downstream 220733 16642363 ~ 16642613 (-)
G136186 NA non-coding downstream 311065 16552030 ~ 16552281 (-)
G136307 NA non-coding upstream 80527 16956142 ~ 16956359 (-)
G136372 NA non-coding upstream 163722 17039337 ~ 17039966 (-)
G136376 NA non-coding upstream 180997 17056612 ~ 17057001 (-)
G136382 NA non-coding upstream 216928 17092543 ~ 17093357 (-)
G136383 NA non-coding upstream 226788 17102403 ~ 17104457 (-)
G136223 LOC105892008 other downstream 163555 16699475 ~ 16699791 (-)
G136222 NA other downstream 164236 16698642 ~ 16699110 (-)
AMCG00012340 NA other downstream 430533 16415107 ~ 16432813 (-)
G136125 NA other downstream 548953 16312721 ~ 16314393 (-)
G136070 NA other downstream 636103 16220126 ~ 16227243 (-)
AMCG00012365 NA other upstream 35877 16911492 ~ 16914685 (-)
AMCG00012372 tpm3,LOC106570192 other upstream 188941 17064556 ~ 17098725 (-)
G136378 NA other upstream 217884 17093499 ~ 17133907 (-)
G136412 NA other upstream 326159 17201774 ~ 17203233 (-)
AMCG00012385 NA other upstream 333163 17208778 ~ 17217639 (-)

Expression


Co-expression Network