AMCG00012358


Basic Information

Item Value
gene id AMCG00012358
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16842567 ~ 16852573 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012358
CCTCACCCAATCTGCCTGACACACCCCTCAGCCAGGCGCTTCAGCCTCGCAAGGAAGAACAGCAGCCAGTTGTACAAACAAACCGCTTCAGctgacagcgagagagagagagagagagagagagaggggccaGGGCAGGTGAACGTGAAATCAGCTTCCTTAAAGCTCTCCGGGGGGCCCAGCTCTTTGAATCGTGGGCcggtggagagggagagcgggTGGGGaggtcagtttttgtttgtttcttttttggttttcattctcCATTCACCTGCGTAGGGATTCAGGAGCCAGAGAAGCGCGTGGCAGCATCCACGGAGAgcgctgagcagcccaggatgGGGTCGGAGGAGGATTATAACTTTGTCTTTAAAGGACTGCGGAGTGACGCCCCGCTATCTGACTACAGCGTCGCCGAAGGTCATCCATACTTGGCTGTAGACCACGACCGAGAGAGCACCGCCCCATACGTGGAGCTGGAGGCTTTGGTGCTGATCGGCGAGTCCGGGGTGGGGAAGAGCAACCTGCTGTCCCGGTTCACCAAGAACGAGTTCAACCACGACAGCCGCACCACCATCGGCGTGGAGTTCAGCACCCGCACCGTGCAGATCAATGGCCTCACCATCAAGGCGCAGATCTGGGACACGGCTGGCCTGGAGAGATACCGAGCCATCACTTCCGCGTCCGCCGGGCTTCTGTGCTGGCTCTGTAACCTGATCTGCCAACTAACGATCAAGGCAGACGTCGCCTCACTGGAGGAGAACGGCGACAACCACCGAAAAATAGCATCTGGGTGGTATTTCAGCGCGGTGCGGGCTTCAGAGCACCGCGCAATCCTGAATGCCGTCCCCCATCCCCCGTCCCCCACGCCACTCCATTGCCTCCAGATCCACCGGAAAGTTGCCAGCAAGGAAGTGACTCGCGGCTCCATCAGTGCCGTCTCCCTGTCCAACCCCAACGCGATCGCAGGCGAGAACAAAGAGGAGAAGAAAGCCTGCTGCAGGAATGTGTGACCTCCCCCCCATCCCCGTCCCCTTCCCCGTCCCCTTCCCCGTCCCCTTCCCCGTCCCGTTCCCCAGCCCGTGACATCATAACCCCACCCTCCGGGATCGGCCCTGCAAACCGAGCACATCCCACAATGCAATGGGGTCTGCTGGGGTTGGCGGACGCACTTTATTTCAGTGACATCAGTGGCCCCCCCGTCTCCTGCTCTCCGTCTCCCGTGGACTTGTCCTACATCGCTAATCATTCCGGGGTCAAAATAGGTTTTTAACACTTaatgagtttttgttttcagggtCGTTATGGGGCAGGGGGCTCAAATTCAGTTCCTGCAGGAGCCAGTCTTCTGATTTTCATCCCAAGTGGACTGGTCTTCAGTCACTTTGTTTAATCCAGTGTTTGCTCAATTAAAACCCATTTAACATCGTTTTCAGGTCTTTTGCAGTCAGTTGCCATAAGGCTGATGTTGACTCCACCTACAATTGTGcagttattaaatgttaattagtTTATCAGAACTATTACGGACCTCTGGGGGCTTGGCTGGAACAAAAGCACAACGTAAGGACATAGCAGAACGTTTACTAGTGGTTTGCTAGCCGGTAACTTGTCTTAAAAAAAAGGATCCAAGAACCACATTCAAGCCTGACCTTGAATGACCCTAAGGAGTCGGCTCCAACAACGTGACTGGGGGCTTTTGACGCAGGCCCCCGCAACTCTCGGTGTAAAGACCTGATTCCTGTTTTCTCTGCCGAGAACCTTTGACTCACTGGTAGTGTTGCTGATCTCGGGACtaaccaaaacacaacaaaaccgAAGACACCGTCACCCTCCGGGAACTGAATTTGAGGGCAGGtctcacagacccagattaacTACCCTatgcagtttattatttttattattattattattattattattattattattgctacttTGTTTTCTACGTTCTTTATTGTGGGAGGCTGGTGGGGGGCAAGGGAGGAGGTTGCAGGCCCAGATTCCTCCTTGGTTTGAAGTCCGTACTGCAGGCAGAGTCCAGTGCGTATTGAATATGAACCTTGGCACTCTGATCTCTACACGACATTTCAGTTTGTGTCTTCCACAGGGTAACACAGTACcaagggagtggggggggaaTGATACCGTCCATTGTCAGCCTGGGGGGTGTTAAATTGGTCCAGGCAGGCAGGCGAAATGGGAATCACAATATTAGGCTAGAAGGAGGTTCTGACCACTAAGTATATCCTTACATCtgtcttttaaaatcttttaagCTGACTTGTTATTTGTctctgtacttttatttttcaaagaactACCTGTCTTAAATTTTGGTCTTATTAAAGTCGATTCGGACGCGATGCATCGGGAAACAACGAAGTCAAATGAAAAGTGATCAGTCGTATCCCTGTGATCGGTTTCTGTGTTCCAGATTTCCTCTAGGGGGAAGatgtggtcataatgttgtaATCTCTGGCAAACAATACAtcttttgcaataaaataaacaacccaGGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012358 True 2527 mRNA 0.51 5 16842567 16852573

Neighbor

gene id symbol gene type direction distance location
AMCG00012357 LOC107726679,LOC107671462,LOC107592127 coding downstream 1381 16829034 ~ 16841186 (-)
AMCG00012359 NA coding downstream 51668 16787004 ~ 16790899 (-)
AMCG00012353 NA coding downstream 69503 16765074 ~ 16773064 (-)
AMCG00012352 NA coding downstream 120520 16718762 ~ 16722047 (-)
AMCG00012344 NA coding downstream 331958 16495789 ~ 16510609 (-)
AMCG00012355 NA coding upstream 1663 16854236 ~ 16858406 (-)
AMCG00012356 ubqln4,LOC105012604 coding upstream 10773 16863346 ~ 16875615 (-)
AMCG00012363 NA coding upstream 62948 16915521 ~ 16916696 (-)
AMCG00012362 NA coding upstream 70233 16922806 ~ 16923984 (-)
AMCG00012361 NA coding upstream 92732 16945305 ~ 16951831 (-)
G136226 NA non-coding downstream 130934 16709574 ~ 16711633 (-)
G136225 NA non-coding downstream 137754 16704588 ~ 16704813 (-)
G136224 NA non-coding downstream 142363 16699989 ~ 16700204 (-)
G136203 NA non-coding downstream 199954 16642363 ~ 16642613 (-)
G136186 NA non-coding downstream 290286 16552030 ~ 16552281 (-)
G136307 NA non-coding upstream 103569 16956142 ~ 16956359 (-)
G136372 NA non-coding upstream 186764 17039337 ~ 17039966 (-)
G136376 NA non-coding upstream 204039 17056612 ~ 17057001 (-)
G136382 NA non-coding upstream 239970 17092543 ~ 17093357 (-)
G136383 NA non-coding upstream 249830 17102403 ~ 17104457 (-)
G136223 LOC105892008 other downstream 142776 16699475 ~ 16699791 (-)
G136222 NA other downstream 143457 16698642 ~ 16699110 (-)
AMCG00012340 NA other downstream 409754 16415107 ~ 16432813 (-)
G136125 NA other downstream 528174 16312721 ~ 16314393 (-)
G136070 NA other downstream 615324 16220126 ~ 16227243 (-)
AMCG00012365 NA other upstream 58919 16911492 ~ 16914685 (-)
AMCG00012372 tpm3,LOC106570192 other upstream 211983 17064556 ~ 17098725 (-)
G136378 NA other upstream 240926 17093499 ~ 17133907 (-)
G136412 NA other upstream 349201 17201774 ~ 17203233 (-)
AMCG00012385 NA other upstream 356205 17208778 ~ 17217639 (-)

Expression


Co-expression Network