AMCG00012360


Basic Information

Item Value
gene id AMCG00012360
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16877377 ~ 16900435 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012360
AAATGCCACCAGGAGACCGTGCGGGTGGCTGGTTACAACCGGGCCCCCACCATGGAGGACGGGGCCACAGTGGCCTACGTCGAGGCCGGCATCAGCGAGATCCAGCGAATTGGTGAACCTTGGTGCCACCAGCGCGCCACACCCTGTCACCAGGGACACCCGCTTCCGGGGCCATTTCCTCCCCCCGCACAGCAAAGGGTGGCAAGCATTGAGTGCTGTGACCCCTGCACTGCAAGAGTAACCTGCAAGGCAGCGGATGCGTGCCCGGTGGCCTGGCTGAAGCAGTCCGAGTCCCCAGCAACTGAGGGGGACATTCTGCCCGCTCTGCCGTCTGCGGGGGATGTCATGCCGCTCCCGCCTCCGCCTTCTGAGCGGAACTCCGGCTGCTCCTGCCTCGGCAGCCTGAGGGGGGTGACTTTCCTGAGCTCGAGAGGGAAGTCAGCCTGCCACCGCCACCCAGGGAGGACGTGCCCGCAGCGCCCGGGGCCGCCAGCCTGCTGCCGCCGCCTGGGGATGAAGTACCGGTGTCGTGGCTGCTATTGTGTCCTGAGGGGGCACCACCACTGCCTGGGAGATCACCCCACCCGGCGGTGGAATCTGGAGGGGACGGGGAGAGGGACCATTGCCTCACCCAGGGTCACAGAAGAGGGAGGACAGTGCCAGAGTGACATAAAAAGCGTCTTGAGGGATGAGAACATCTCCCTCGAGTTACAAGACAAAATTATCCACTATTTCAAACACAAGTGGACCTGCACTAGAGGCAGGAACACGGAGGTGATCTTTAGGGACATTCCCAGACAAATGAGGGCAGACATATTCGAGCAGACCGGTTTGGAAGCACTTCAGCAGCACGACATCTTGGTGAATATGTCAACACCCTTCCTGGAACACCTCTCCACCAAAATGCGGCTGCTGAACTTCACTTCAGGGGAGTACCTGGCTCTGAGAGGAGACGTCGCCACGCTGATGTTTGTGGTGGTGAATGGGACAGTGAAGGTGATCAGGAACGAACAGCCCAAGATGGCTGTATCTGTGACTAAAGGCGATGGGGTGGTGGTTTTctctgtgacctctgaccctacCAGCAACTGGCCGGTGTTGTGCCAGCTGTTGGGCAGTCTGTGCTGCAGCCCTTTCTGCCTGGTGTCCCGGAGTCTGAGGCGCTTCTACTCGGGCACTCAGGCCTCCCTGGGGACTGTGCAGATCATGGTTGGTCTGATCAACATCGGGTTAGGAGTCATCCTTCAGCAATTTGATTACTATGAATCCCATCCTTTTTGGCTGGGAGGCATGTTCATTGCTGCAGGTGTGATGTGCGTCTTCGCTGACCGGTTCCCCAACCCTTGCTTGGTGTCTCTGACGGTCTGCACAGACCTGGTGAGCGCCATGCTGGCTGTGACCGCAATCGTGCTGTACTCTGTGAACTTGGCCAATAGAGATGGCTTGTACTATTTCTGTCGCTTCAATGATGACGGTTATCACCGTTCCTGGTATGCGACGACCACGTCGCCCAACCCCGAAGATGAACGCATCCAGCAGATGAACAAGGAAAAGTGCCTGGAGGTGACCTTGAGGGGGTTGCGGATCATGCTGATAGTGGTCAGCGTCCTGCAGCTGTGCGTGGCGCTCAGCGCGGCGACTCTCGGCATCAAGTGCTTGTGCCGCAACAAGAGGGAGCCGAAGGTAAGTCCGCGACGGCCACGCGAACGGCCAGACGCCTCTAGTCACTGCCAGATCTCTTGTCACAGAGCTACGATTTGACTGAACTGTAATAAATTGTAATCATTGCTTAATATTATATTCAGACCATCTGATTACTTGTCTGATTACTATAGGTACATTTGTCAATTATTTTACCATCCGATTACATTTTCGGAGCCGTCTGATCTGTTTCCAGAATTCACAGTGGATTAGATGCGTTTTGTCTTCTAGTTTCCGCCAATGTCTTCACTGGGTAACTTGAGAATGCAGTGCATGTTGTACTGTGTGAATGACGGGATATCATTGTGTGCGTCTCTGGTAATGACAGAATATACAGACGCAGTTCGGTCAGCTGATGAACCTttataataggaaaaaaaatgttctggCCTTTGATTTGATGTAAGATGAATGCACGTGGCACAAACTATCAAGGAGCTACACATgaataaatcaagaaaaacaggaaaaatagtCTGGAGTGTAAAGTGTGAATATACAGTCCATCACGCCTCCCAGGTGGTTTTGCTCAGAGGcctgtcatttattattattttttattattgcatgtCATAATGGCAAACTGACAACTATAATTGGCAATTTCCAATCGGGGTGGGTGAGAAATGCAAACTATTTGTGTTGCACCGTTGATGTCTTGCAGCCCCTGTCTGACGTTGAACTCTCCAAGCCACTTCTGGAAGAGGACACCGATGACCCAGAAGCCTgaagaaaaccaacaaaagaaacataacGCAATGGTCCCAATTGCATTTTGGCAATCTATAAACCACTTCTTATCGGGCGCCTAATTACCTGATTATCATTCACTTCCTGTTAGGTGTATCATTACCCTTTTTCCCCACATCAATATCTATTggttatacattttctaatatcTCGCATGTTAAAGGGGTGTCCATTTCCGTGTAACTCTTTTGGGGGCCCAATCTGTCAccagttttgcatttatttcaagaTGGGGAAGAACATCTCTCAGAAAAGATATCTCCAAGATGGAtcaaaagtaaatgaataaaaggAGTATAATATTTGACTTTTGACACCAGTTTGCACGATGAATGTCAAGGCTTTGCTCTGAACCTGCAGAAGCGTTTCAGAAGCGTAAAGtccacagttttgtttctgtgacCGTCTGAGGGGCCAATGTGGCTCTTGTGGAATTGTGTTTGGAATGGAGGACAAGCAAAGAAATCCTCCCCCATCCTTCTGGGATGCGAATGACAGAGCTGTGTTTACTTTAGATACAACGTCCTTTTCTTTCAGCCAAAAGGTGTGGTAGTTGTAGAGAGAAGGATCATGGGAGAAATGGCCCCTGTTCACAGAAATACTTTGACTTGTGAGATGCGATTCTATTCATAGACTCTCATTTAGTAGTCGCCTCCTAAGCTCTTATCGACCATACCTATAGGAGAGCTTTAATCTTGCAGTATTTGCACTGACATTTAGCACTTTTGATTGTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012360 True 3186 mRNA 0.50 10 16877377 16900435

Neighbor

gene id symbol gene type direction distance location
AMCG00012354 mex3a,mex3b,LOC107756899,LOC107671389,LOC107671388 coding upstream 58938 16812785 ~ 16818439 (+)
AMCG00012350 NA coding upstream 161402 16713346 ~ 16715975 (+)
AMCG00012347 NA coding upstream 206678 16650333 ~ 16670699 (+)
AMCG00012343 aldoab,aldoaa,LOC107581735,LOC103381979,LOC107689930 coding upstream 340132 16530753 ~ 16537245 (+)
AMCG00012342 NA coding upstream 359756 16513859 ~ 16517621 (+)
AMCG00012366 NA coding downstream 77137 16977572 ~ 16984994 (+)
AMCG00012369 NA coding downstream 93044 16993479 ~ 16997064 (+)
AMCG00012367 NA coding downstream 122224 17022659 ~ 17029088 (+)
AMCG00012370 NA coding downstream 141760 17042195 ~ 17051046 (+)
AMCG00012368 NA coding downstream 156095 17056530 ~ 17063053 (+)
G136236 NA non-coding upstream 45575 16829050 ~ 16831802 (+)
G136195 NA non-coding upstream 245113 16620255 ~ 16632264 (+)
G136191 NA non-coding upstream 311146 16565899 ~ 16566231 (+)
G136177 NA non-coding upstream 338228 16538062 ~ 16539149 (+)
G136051 NA non-coding upstream 681263 16193975 ~ 16196114 (+)
G136286 NA non-coding downstream 11800 16912235 ~ 16914695 (+)
G136297 NA non-coding downstream 56254 16956689 ~ 16957295 (+)
G136295 LOC103039167,LOC108433880,LOC103372036,LOC105891956,LOC108256189,LOC108256188,LOC106605297,LOC104942599 non-coding downstream 57023 16957458 ~ 16978213 (+)
G136351 NA non-coding downstream 264541 17164976 ~ 17172106 (+)
G136436 NA non-coding downstream 389710 17290145 ~ 17290529 (+)
G136258 NA other upstream 1777 16871838 ~ 16875600 (+)
G136255 NA other upstream 9929 16866537 ~ 16867448 (+)
G136245 NA other upstream 13784 16811706 ~ 16863593 (+)
AMCG00012351 NA other upstream 112269 16733426 ~ 16765108 (+)
AMCG00012349 LOC106588560,LOC106570198 other upstream 171184 16674279 ~ 16706193 (+)
G136296 NA other downstream 62895 16963330 ~ 17000089 (+)
AMCG00012374 NA other downstream 225578 17126013 ~ 17129339 (+)
G136341 NA other downstream 226720 17127155 ~ 17264404 (+)
AMCG00012387 NA other downstream 484501 17384936 ~ 17388799 (+)
G136489 NA other downstream 511326 17411761 ~ 17476097 (+)

Expression


Co-expression Network