AMCG00012365


Basic Information

Item Value
gene id AMCG00012365
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16911492 ~ 16914685 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012365
ATGAATCTATTTGCTGGGAATACAAGTGTTACATCACCAGACAGACGCATCGCGGGCACAGGGACAGCTCGGTCTTTCCCAGATAAAGATCTCGGGATTGTTTTTCCTCCATGCCTGCAAAGCCTCTCAGCTCAGATGCCCTGTAATAACAGAAGGAGGACTACAGTGGGCGTGTCGGCAGAGGAAGAGGCCAAATGCCGGGCCCTGGACTGA
>TU171274
TTTCTTTGTGAGGCTTGAGTAAGTCTTTTCTCTTGAGGTCACACCCTGCAAACGAAGCTCGGGGGCTACAGTACTGAAAAGTACAGAGCTGAAATCGAAACCCTTTTGGCCTCTTTAAAACTACCCCCCAAAACTCGTTCTGAGCCAGGGGGGGTGTTCGCTCTCCAGCGAGTCAGCGCTCTGATTCAGCCGCAGGCATCGGATCCAATTTTCACTTGTTGCGAGAGACACTAGGGCATTGTTCCAGCCTGGTGGGATAGAATACCTCCCCTTCCTATTTCTGTAAGCTTTTCTTTCCACGACCACAGCACTTCCACCCGAATTCTATTCCCAGTCATCGGGGCCAGCCTGCTATGGGCTTTTCATAACGACCTCGGCACCCCCACCCACACAGGGCTATAACTCTCATGTTTGCATTAGATCTCCCTCACAGATTGCACCGTCAAGCTCGACTTCGCCTGATCAGTTTTTACTGCCCGCCCTATCGCCCTATTTCCTCACGGATATTCTTGCGGTCGAGGGGGAATTCTGGGATTGCACTTGTACAAAagccttctcatccctggcttACCGGGTCCAGTTAAAAAACTGCAGCCAGCAGGAAACAGTTTGGACTCCCTTTAGGTGACCGTGTGATCTGTGTAGTGCTTTAAGCATTCCTCGGGTGCCGGCTGTTGCCCCCACTTTCACCTCTTTGCCgtaaatctgaattaaaaagaGAGGCCCTGGTATTCGTATGTTATGTGTTCTTGCACACGTGTCGGCACCAACCTGTATCCTGTAAGACCGGAGATGAATCTATTTGCTGGGAAGTCCgttttttgtgtgatttgttttttgcactGAACCAGATTTTACGAGGCGgttcatttgaattatttggaAAAGATCAAGCAAATAAAAGCAATTGTCAGTGTTTGAAACCGCCTTGGCTCAACACAGTTTATACTCTGGgacgggggggagggggggcatgtGAGTGTCTTATCGGACTGTCCTGAACACATTCCTGTCGTGAAGTGAATCGGTGCGGTATTTCTGGGGATTTGGGAATGCAATTGTGAAAGCGGAATAGATGTTTCGGAAGACTTTGAGAATTCCTTACTTGTTGTGAGACATCTTTACACCCCAGTGCCCCCTCCCACCACATTTCCTGAATGCCCTGCATGCGTTTCAATACCAGCTCGACCTCCAAgactctccccccctctctttaaTGTGGTAAGGGCTGGGCAGCTTTGATGTTGGCTCTGAATGCAACTCCAATGTTTGGACCACTCCATTCTCTGCTAATTGTATGGTTTGcggtttgttttgtctgtctttCATTCATTCTATTTATGTAAAACTGACAGAACTCCCGTAAAACTCCTAGGAGAGCACTGAACCCAACTCCAGTTCACTGCCAGGTCTCGTTATCCAATACCATTGTCCGATAGGTTTGCCCTGATCCCAGTTAGACCTTAagcagatttagttttttctttggaGGGCTTGGTTCAGTCATTAACTCTTTCATGGTAGAAGAATTTCATATTGCGCTCCAGTTAGGGCTAAGGAAGGTATAATAGCCTCTGATTATCCACCCTGTGCAGGTTTTCGTAATGGGGTGCAGATACGTACCGGCTAGCGTCCGGCACAGACTGAGGTGATGGGTATataatatcattaaaaaaatactaaaaacaataagactgaaaataatacaacttaataaaaaatactaaaatgtatcctctttttttaacaataaacaaaGTATAATGGTTCAATTAAACAATCTGGAAATTcagctttatttatgtatgctcCCAAGCATTGACCACCTGTGTCTGCATTACTCGTGCCTGCCGTTTAACCCCTTCAACACCGCAATCTGTTGTAGTGATCGAGTGCCCCTTTAATGCCGCTTGCTAACGGCAGCATATGAATAACTGAAGAAACAAAACCCTACACAAAGAGGTTGCTCTGTGTTTGTATCTAAAGCTGGGGCAGCATATGAATGAcaggagtctctctctctctggatctAATGATCTATTTACAGTGACTGCTGTCTTTTGCCAAGACATGTTAAATACTGATTAGCTTTGCTCTTATGCCAGTTTGCAGGAGGACCCCAGTAGGTTGGAGAGGTCGGAAGAGGTGGCCAGGCAAGGTTCTGTACATAAGCAATACTTTAATGCCAAAGACAACGTATGGTAATTTTCCCCCACTGCtacaataagaacataagaacataagaaagtgtccaatcgagaggaggccattcgacccattgtgcccgtttggtgtccattaataactgagtgatccaaggatcctatccagtctatttttaaatgttcccagattgtcagcttcagccacatcgctggggagcaAAAATGTTATGACTTGCATAATatggagatttgtttttataatgtacaataaaaaattgaaaagtgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012365 False 213 mRNA 0.53 2 16911492 16913893
TU171274 True 2451 lncRNA 0.45 1 16912235 16914685

Neighbor

gene id symbol gene type direction distance location
AMCG00012356 ubqln4,LOC105012604 coding downstream 35877 16863346 ~ 16875615 (-)
AMCG00012355 NA coding downstream 53086 16854236 ~ 16858406 (-)
AMCG00012358 NA coding downstream 58919 16842567 ~ 16852573 (-)
AMCG00012357 LOC107726679,LOC107671462,LOC107592127 coding downstream 70306 16829034 ~ 16841186 (-)
AMCG00012359 NA coding downstream 120593 16787004 ~ 16790899 (-)
AMCG00012363 NA coding upstream 836 16915521 ~ 16916696 (-)
AMCG00012362 NA coding upstream 8121 16922806 ~ 16923984 (-)
AMCG00012361 NA coding upstream 30620 16945305 ~ 16951831 (-)
AMCG00012364 LOC108433880,LOC103372036,LOC108256189,LOC108256188,LOC103039167,LOC104942599 coding upstream 45698 16960383 ~ 16965871 (-)
AMCG00012371 NA coding upstream 71177 16985862 ~ 16990109 (-)
G136226 NA non-coding downstream 199859 16709574 ~ 16711633 (-)
G136225 NA non-coding downstream 206679 16704588 ~ 16704813 (-)
G136224 NA non-coding downstream 211288 16699989 ~ 16700204 (-)
G136203 NA non-coding downstream 268879 16642363 ~ 16642613 (-)
G136186 NA non-coding downstream 359211 16552030 ~ 16552281 (-)
G136307 NA non-coding upstream 41457 16956142 ~ 16956359 (-)
G136372 NA non-coding upstream 124652 17039337 ~ 17039966 (-)
G136376 NA non-coding upstream 141927 17056612 ~ 17057001 (-)
G136382 NA non-coding upstream 177858 17092543 ~ 17093357 (-)
G136383 NA non-coding upstream 187718 17102403 ~ 17104457 (-)
G136223 LOC105892008 other downstream 211701 16699475 ~ 16699791 (-)
G136222 NA other downstream 212382 16698642 ~ 16699110 (-)
AMCG00012340 NA other downstream 478679 16415107 ~ 16432813 (-)
G136125 NA other downstream 597099 16312721 ~ 16314393 (-)
G136070 NA other downstream 684249 16220126 ~ 16227243 (-)
AMCG00012372 tpm3,LOC106570192 other upstream 149871 17064556 ~ 17098725 (-)
G136378 NA other upstream 178814 17093499 ~ 17133907 (-)
G136412 NA other upstream 287089 17201774 ~ 17203233 (-)
AMCG00012385 NA other upstream 294093 17208778 ~ 17217639 (-)
G136408 NA other upstream 319243 17233928 ~ 17242827 (-)

Expression


Co-expression Network