AMCG00012372 (tpm3,LOC106570192)


Basic Information

Item Value
gene id AMCG00012372
gene name tpm3,LOC106570192
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17064556 ~ 17098725 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012372
CCGCCTTCTGCGACCCACGGAGATCCGAGCAGCGAGCGAGCCGGCGACTGGATCAGACCCGGATCGGTAGCGAGGTTGTCGGGAGAGCCGGCGGGGGGGCCTTGTGTAGAGATCGGCGCGACCTGGACTTACTTTGGGCTGTTTTTGTTCGGGCGGGACCTATTGCACCACAGTAGTGATTTAAATACGGTTATTTCAGGGCTAGTTTTTCATATCTGTCTTCACCCCCCCCTACAAGAGCGGCTGATCCACGCGAGAGACACTTTAACCCCCCCTCCCATTACGCGGCTTCACCGAGAGACCCCCACACatctccctccccaccccacacacacacgcagacatgGCCGGGGTGAACAGCATCGAGGCCGTGAAGCGCAAGATCAAAGTTTTGCAGCAGCAGGCGGACGAGGCGGAGGAGCGGGCCGAGGGGCTGCAGCggcaggtggaggaggagaagcgAGCCCGGGAGCAGGCGGAGGCCGAGGTGGCGTCTCTGAACCGCCGCATCCAGCTAGTAGAGGAGGAGCTGGACCGGGCCCAGGAGCGGCTGGCCACAGCGCTGCAGAAGCTGGAGGAGGCTGAGAAGGCAGCGGACGAGAGCGAGAGAGGAATGAAGGTGATTGAGAACAGAGCCCTGAAGGACGAGGAGAAGATGGAGCTACAGGAAATCCAGCTGAAGGAGGCCAAACACATCGCCGAGGAGGCCGACCGCAAGTACGAGGAGgtgGCTCGTAAGCTGGTGATCATTGAGGGAGACCTCGAGCGCACAGAGGAGAGAGCTGAGCTTGCAGAATCCAAGGCCAGGGCCCTGGAGGAGCAGCTGCGAGGCTTCGACCAATCTCTGAAGTCGCTGCAGGTGTCCGAAGAAAAGtATTCCCAGAAGGAAGACAAGTATGAGGAAGAGATCAAGATCCTGACCGACAAGCTCAAGGAGGCTGAGACCAGAGCCGAGTTTGCGGAGAGGTCAGTGGCCAAGCTGGAGAAGTCCATCGATGATTTGGAAGCTTCTAGGTCTGCGCCGCTCCCCGTGGGGGGAACCGCCTGGCTGTGGCAACACcactccttcctcctcctctcctcctcctcctcctcctcctggtCTCTCAccttccctccccctccctgtcCAACCTCCCTCTCCAGCCTGCATTAA
>TU171385
CCTGCTGTATCTGGCAGGCCTGCAGCTTGGCCACCTCCTGCTGGCCGTTGGCGATACTGCTCTGCTGGCTGGCCCTCAGCTCTTCGGCCATGGCCTTAGCGCCGAGCTCCTTGGCCTGGGTGTCCTGGATCCTCTGCTTGTTCTGCGCGATCTCGTCCTCGGCCGTGATCATCCTCTCGTCCAGCTCGTCCGCGCGGCTGCGCCTCTCCCGGAGCTCCAGCTCCTGTGAGTAGAGCAGGAAGACCAGCCACATGGAGATGCCCACCACCCCGAGCAGCAGCACGCCCTGGGCCCTCATGGCCagggggaagagggagaggaggaggaggaggaagacggGACTAGAGAGGGCAAGGGACGGTTGGTGGTGAGCAGGCTGTCTTTGTCAGTTTCTCttgctctttctctcactctcgtctctcagtgtctctcgcAAGTGTCTCAGCCTCtcccctctgtccctctgctctctctctctctcacctgctaTTGACGGTCTCCTCCCCTGTCCTCCTCTCTTCATCTATCTGTTCCTCTCTCGCTGTTGCATTCACCtaccttctctccctctctctctctctctctctgcccttctctgtttctctctctccaagtTCTTGGGCTTGAGGAAGAGACCGGGAGCTTGAAGTTCCTGTGTGACAGGGAAAGAGAgcgggagggaggggagaggaggaggaACCGCCTGGCTGTGGCAACACcactccttccctccccctccctgtcCAACCTCCCTCTCCAGCCTGCATTAAACCCGCcccctctttctcctctctgtctctcgcccTGTTTTCGTTCTTTACTCTTccccttcttcctcctcctcttcccccgATCCCCCATCTCTTGTCTCTGAGGGGAAGACTGGGGGGTGGTTCTCTCCATCTTCCCTGTACTCCTCTGTTGTGTGTCCATCTCAGACACTGCTACAGTGAGGGTGCCAAATTTTTTTCTGCTAGCTagtgagtgttttttttgtgtgccacaatttatatttttggtgGAGAATGACTGATGGGTCTCTTCTCTGGACATTACAGGGGATCATGTTTCTTACAATTTTTGTAACTGGaatgggtgggggtggggtttgagaggaggaaggggagaaaagTGACCTCCATGtttcttcaaatgtaaaaatcactCCTAGCCAATCACGATCTCTGATCATTCTTGATAACTGCCAATCCTTGTGCAAGGATGACTCGGGGGGAGGAGCCAATTGAATTCTATCAAACTGCCAaaagaggtcagaggtcatctTATTGCAAGAGATGAAGGGAAAGAGGGATTGGGGTGTTGGGGGCGGTGAAAAAAACCCCATTAAAGTCTTAACAATTTAGCCCGAGAAACGTatccaaaattaaatcaaatctgaaaataaactgcaataatgttttaaactgcGAAACAGGCACACGTTGGAAGGTGTTCACTTTTTGTAACGGTCGTTTGCTTCTTTGTAATAATTATGATGGAAACCATGAATGATTTGAATAAAGAAACAATCTTATTGACATTCCAAACCCC

Function

symbol description
tpm3 Predicted to enable actin filament binding activity. Acts upstream of or within skeletal myofibril assembly. Predicted to be active in actin filament. Is expressed in several structures, including adaxial cell; alar plate midbrain region; axis; brain; and musculature system. Human ortholog(s) of this gene implicated in congenital fiber-type disproportion and nemaline myopathy 1. Orthologous to human TPM3 (tropomyosin 3).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012372 False 1156 mRNA 0.61 8 17065337 17079207
TU171385 True 1551 lncRNA 0.52 3 17064556 17098725

Neighbor

gene id symbol gene type direction distance location
AMCG00012371 NA coding downstream 74447 16985862 ~ 16990109 (-)
AMCG00012364 LOC108433880,LOC103372036,LOC108256189,LOC108256188,LOC103039167,LOC104942599 coding downstream 98685 16960383 ~ 16965871 (-)
AMCG00012361 NA coding downstream 112725 16945305 ~ 16951831 (-)
AMCG00012362 NA coding downstream 140572 16922806 ~ 16923984 (-)
AMCG00012363 NA coding downstream 147860 16915521 ~ 16916696 (-)
AMCG00012384 NA coding upstream 147365 17246090 ~ 17254514 (-)
AMCG00012383 NA coding upstream 166038 17264763 ~ 17267311 (-)
AMCG00012390 NA coding upstream 245629 17344354 ~ 17364449 (-)
AMCG00012394 NA coding upstream 361198 17459923 ~ 17465336 (-)
AMCG00012399 adar coding upstream 409199 17507924 ~ 17511092 (-)
G136376 NA non-coding downstream 7555 17056612 ~ 17057001 (-)
G136372 NA non-coding downstream 24590 17039337 ~ 17039966 (-)
G136307 NA non-coding downstream 108197 16956142 ~ 16956359 (-)
G136226 NA non-coding downstream 352923 16709574 ~ 16711633 (-)
G136225 NA non-coding downstream 359743 16704588 ~ 16704813 (-)
G136383 NA non-coding upstream 3678 17102403 ~ 17104457 (-)
G136392 NA non-coding upstream 27481 17126206 ~ 17129299 (-)
G136391 NA non-coding upstream 46697 17145422 ~ 17148086 (-)
G136409 NA non-coding upstream 94016 17192741 ~ 17193982 (-)
G136411 NA non-coding upstream 98510 17197235 ~ 17198702 (-)
AMCG00012365 NA other downstream 149871 16911492 ~ 16914685 (-)
G136223 LOC105892008 other downstream 364765 16699475 ~ 16699791 (-)
G136222 NA other downstream 365446 16698642 ~ 16699110 (-)
AMCG00012340 NA other downstream 631743 16415107 ~ 16432813 (-)
G136125 NA other downstream 750163 16312721 ~ 16314393 (-)
G136412 NA other upstream 103049 17201774 ~ 17203233 (-)
AMCG00012385 NA other upstream 110053 17208778 ~ 17217639 (-)
G136408 NA other upstream 135203 17233928 ~ 17242827 (-)
AMCG00012391 NA other upstream 281455 17380180 ~ 17381595 (-)
AMCG00012393 NA other upstream 317849 17416574 ~ 17434113 (-)

Expression


Co-expression Network