AMCG00012377


Basic Information

Item Value
gene id AMCG00012377
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17255412 ~ 17258599 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012377
gcagtgtttctcagtgtgcAAGAAAAACGGCCTCCCCTTTAAAGGAAGCCCCTTTAAGAAGATCTCACCTGGACACACCTGCAGCCAGGCCCTCCCCCACCGAAACCTCCACAGAAACAAGCCCGACAGAGAGGGGCAATGGCGGCCTGTGCGGAGCAGCTGAGCCGCTGACTTTTGAGAGATCCTCGAGAACCAGGAACGAGCGAGAGGGGAGGGGACGGACACCTTTGGCACAGACGTACAGACGCTCCtgtcctaaaataaaaatactgatgTACCCCGATTCAGGGCCAACCCCCCCCACGGAGGACGAGGGGTTCCCTGAAAACATGGGGACAAGCCCTGTACCCCACAAAACAGCACAGGGgggacaggaggaggaggaagaggaggaggaggaggaggaggagaagacgacgacgacgacgacagGGGAAGAGAGGAGCGGGAAgtgtgaagaggaggaggaggaggaggaggatgtgAGTTTGGCATGCATGGAACCCAGTACTCTACAGTGGAcagagaagaaggaggaggaggaggaggaggaggaaaaagaTTACGAAGATGAAGAGAGAACGCGCTCTCTGGAGTCTCTGGGCGCCTCGCACAAGGAGATGGACAAGAAGGAGAGGTTGGGGAAGATGGACGAGCTGGGAATAGAGATCGAGGAGGGGGAGAACTGCCTGCCGGAGACGGCGGCTGCCGTCTTCCACCCCAGCGTGCAGATCGTGCACCCCGGccgcgaggaggaggagggggacgCCGGCTGTGGAGACTCTGAAAAGAGCCCCTTTCTCCGCCCCCAGGGGACCCTGCCTGATGGATACTTCCCGGACTGGCATGAGGAGGACCGGCACCAGACAGGGGGCTGCACGTGTTGCAGCAGGGGCTGTTGCTGTGGTTATGACGCTCTGAAGGCGGGGGCAGGGCTGATGTCGGCAGGGCTGCTGTGCCCCCTGCTGCTGTGGGGGGGGTATGCGCTGCTGCCCTTTGACGCCCCACTGCTCAAGGATGCCCCCCAAAGGCTGGtctacacactgcactgcgCCACCTTCGCCACCGTGCCCATCCTGCTGGgtgtgcTGGTGCAGGGTTTGTGTCGGCTGTGCCCCCCGTCTCTCACCCTGCGCCGAGAGGACGACAAGGAGCCCACGCTGCACCAGCGTTTCGTCAACGACTCGGTTGGGCTGTTCCTGCTGTTCTTCCTGAACCTGGCGGCCCTCTCCACCTACCTGAGCCAGGAGCACCTCAAACTGGTACCCCTTCTCACCAGCCTGTTCGCCATGGGCAGGTACCTACTCCGCCTCTACTCCGGGTCTGCTCCGCTGTTGGTGTACTGGCTGGCCTTCGCGCTGGGCAGCAGTTTCCGCAGCCTTGGTTTCGGCCTGACCTTCTTCCCCATCCCGGCGATGCTGGTGGCCAACATGTACTTCATGTTCGTCCTGGAGGGCAGCAGCATCTTCGCTCTCGAACCCGACCCTGACGCCCCGGGCCCCACTCAGGCCCCCAGCCCCGGTAAACAGAGGTTCTGGGGCTGATTTCCCCAAGGTCAAGAACCAGAAGAGACTAGCTTTTGCTGTGAAGGGTAAGCAATCTTGGCtattccagtccagtccagtccacacAATCAGTCTATATGATAAATTGAGCTTCAGCAAGGACCCCATTAAGCAATTAAAGGGTGAATCGTGGTGAATGGAGCGCTGACTGGATTTAGACACTGGTGCAATCCACtggagtggactggactggaagTGCCAGGGCTGGAGATGCCAACTATAGGCTGGTGAAGGACGGGGCAGCTGCCCTGACACTGTGACGTGGTCTGTGGCGTAGGTTACAGTTATTTAGTGCAATTCTGTCTGCAAGTAGAAAAGGAAATTGCAAGTTACACctgtacatttttctatttttattcctttttaaatatagatatactTGTTCGCAGGTTTATGTGATGATCGTGTTCGGTCGCTGATacgttttttaaattttcattttgtttccttattcttgttctttcatttttttttcttaaagataatgttttgtttaaaagaataaatgctTCAAGATCAATTCTTCTTGGGAGATGATGGTGTCAAAATCACACTTACATACAGCAgagtctccagccctggtcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012377 True 2150 mRNA 0.56 5 17255412 17258599

Neighbor

gene id symbol gene type direction distance location
AMCG00012379 NA coding upstream 12583 17238280 ~ 17242829 (+)
AMCG00012382 NA coding upstream 20478 17231345 ~ 17234934 (+)
AMCG00012378 NA coding upstream 32998 17221383 ~ 17222414 (+)
AMCG00012381 NA coding upstream 56711 17196439 ~ 17198701 (+)
AMCG00012380 NA coding upstream 61436 17185230 ~ 17193976 (+)
AMCG00012389 LOC107549236 coding downstream 10467 17269066 ~ 17289895 (+)
AMCG00012388 krtcap2 coding downstream 110664 17369263 ~ 17371553 (+)
AMCG00012386 NA coding downstream 116361 17374960 ~ 17380121 (+)
AMCG00012395 chrnb2,chrnb2b,LOC106575520,LOC104959165 coding downstream 238855 17497454 ~ 17504572 (+)
AMCG00012396 ilf2,LOC106588321,LOC106569884 coding downstream 271174 17529773 ~ 17537629 (+)
G136351 NA non-coding upstream 83306 17164976 ~ 17172106 (+)
G136295 LOC103039167,LOC108433880,LOC103372036,LOC105891956,LOC108256189,LOC108256188,LOC106605297,LOC104942599 non-coding upstream 277199 16957458 ~ 16978213 (+)
G136297 NA non-coding upstream 298117 16956689 ~ 16957295 (+)
G136286 NA non-coding upstream 340717 16912235 ~ 16914695 (+)
G136237 NA non-coding upstream 348307 16842567 ~ 16907105 (+)
G136436 NA non-coding downstream 31546 17290145 ~ 17290529 (+)
G136444 NA non-coding downstream 41928 17300527 ~ 17304999 (+)
G136457 NA non-coding downstream 72195 17330794 ~ 17332570 (+)
G136458 NA non-coding downstream 80979 17339578 ~ 17340736 (+)
G136486 NA non-coding downstream 143420 17402019 ~ 17402360 (+)
AMCG00012374 NA other upstream 126073 17126013 ~ 17129339 (+)
G136296 NA other upstream 255323 16963330 ~ 17000089 (+)
G136258 NA other upstream 379812 16871838 ~ 16875600 (+)
G136255 NA other upstream 387964 16866537 ~ 16867448 (+)
G136245 NA other upstream 391819 16811706 ~ 16863593 (+)
AMCG00012387 NA other downstream 126337 17384936 ~ 17388799 (+)
G136489 NA other downstream 153162 17411761 ~ 17476097 (+)
G136499 NA other downstream 200885 17459484 ~ 17466059 (+)
AMCG00012401 adar other downstream 250773 17509372 ~ 17522821 (+)
G136558 NA other downstream 288769 17547368 ~ 17547968 (+)

Expression


Co-expression Network