AMCG00012385


Basic Information

Item Value
gene id AMCG00012385
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17208778 ~ 17217639 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012385
ATGCTCCATGGCGGGGCGGGTGTGACAACTGTTGACGATTCCCCACAGGGGAGTTACTCTCTGCCTGGTGGGAGACCAAGTTTCGACTTCATTACCCAGGCTCACTTCTCCTTACAGCACTCTGTGGCCCAGCTGGGTCTCTGTGAGCTCTGTCAGTGGCTCCCCTCGGCCACGGAGGAGACGCAGAAGCAAACTCTGGTTCGCTCAGAGCTATATATAACGCAGGACAGAGCGAGTCTCACTAACACAACCAGCTTTTCTCATTCCTACCTGAGCAGactCCACTGTCCTACACTGACCATGTCTCTGGCTGACGCTGCACGCATCGTGGGCGAGGTGTTCAAGAAATACGCCGGGGAGGACCAGCACAAGAACTCACTGAGCCCGGACGAGCTCAAGAAACTGCTGCAGGCTGAGTGCAGCAAGAAGggaTCAACCTGCACTTTGACGTTGGACGAGGTGATGAAACGTCTGGACAACAACAAGGATGGACAGATCACCATCGTGGAGTTCGGCACTCTGATCGGCATGATGGCCAAGCAACTactCCACTATCCTACACTGACCATGTCTCTGACTGACGCTGTGCGCATCGTGTCCGAGGTGTTCAAGAAGTACGCCTCTGAGGACCAGCAGAAGGACACGCTGAGCCCAGATGAGCTCAAGAAACTGCTGAAGGCTGAGTGCAGCAAGAAGggAACAGACTGCAGTTCAAAGTTGAGCGAGGTGATGAAACGTCTGGATAACAACAAGGATGGACAGATCGACATCGTGGAGTTCGGCACTCTGATCGGCATGATGGCCAAGCGaatgtgagagaaagagagacaccaCCCCCCGTCTGCTGGAGAGTGAGGgatggagggaaggagagggagagaggagggagagaagggtgGAGTTTATATCttctctgtaaaaaaacaaagatgaaaataaaGATGCATTGGAATTAAAA
>TU171433
GCAGGAGGGATCGTGTAGCTATTTGGCATCGGCTTCACATAATGTCGGGATGTCAACAGATCCCGACCTCACCCCTTCCAGGAAGGAGGATCCCCACTCCAACCTCCCTTCCCCTCCCTAGCGCTCAGAGCTATATATAACGCAGGACAGAGCGAGTCTCACTAACACAACCAGCTTTTCTCATTCCTACCTGAGCAGactCCACTGTCCTACACTGACCATGTCTCTGGCTGACGCTGCACGCATCGTGGGCGAGGTGTTCAAGAAATACGCCGGGGAGGACCAGCACAAGAACTCACTGAGCCCGGACGAGCTCAAGAAACTGCTGCAGGCTGAGTGCAGCAAGAAGggaTCAACCTGCACTTTGACGTTGGACGAGGTGATGAAACGTCTGGACAACAACAAGGATGGACAGATCACCATCGTGGAGTTCGGCACTCTGATCGGCATGATGGCCAAGCAACTGtgatgagacagagagagacactccCACGTCCCTCAAAACAGAGAGACTGGAGACAGACAAAGGAGAAGGAAGTGGGaagtttttttctgtaaagaaacaaagatgaaaataaaGATGGTTTGAATTCAAAATCAGTTCTGTCTCCTGTGATCTCTGTACTGAGGATTGACACAAATCTGTCCGTCTGCCTGCCTTTCTGTCTATCCATCCAGATAGCTGTTATTTGGCCatttttctgtgtatgtatgtatgcatgcatgtaccCACCACACAAGAGGTGGCAAAGGCTGAGGAAA
>TU171434
CTCTACACTGCAGGCTGGTTTTGCTGTGAACATTACAAATCTACCCCATAGCTGTTAgtattatgctttgtattttaccTTTAAATACCTGAGTAATTCTGCTATGACCTGATTGTAATCGAGCAAAATACCATGCGCACTTGTAATTCAGACTCACTCAAGACCACACCAGAGAAGAAAAACCTGCTACCATTGGCCATGATGCAACCATGATCCCAACCTCACCCCATCCAGGAAGGAGGATCGTCACTCCACGCCACGCCACCCCACCCTACCCTCCCTAGTACCCAGAGCTATATATAACGCAGTGCTGAGAGAGTCTCATTCACACAACCAGCTTTTCTCATTTCTACCTGAGCAGactCCACTATCCTACACTGACCATGTCTCTGACTGACGCTGTGCGCATCGTGTCCGAGGTGTTCAAGAAGTACGCCTCTGAGGACCAGCAGAAGGACACGCTGAGCCCAGATGAGCTCAAGAAACTGCTGAAGGCTGAGTGCAGCAAGAAGggAACAGACTGCAGTTCAAAGTTGAGCGAGGTGATGAAACGTCTGGATAACAACAAGGATGGACAGATCGACATCGTGGAGTTCGGCACTCTGATCGGCATGATGGCCAAGCGaatgtgagagaaagagagacaccaCCCCCCGTCTGCTGGAGAGTGAGGgatggagggaaggagagggagagaggagggagagaagggtgGAGTTTATATCttctctgtaaaaaaacaaagatgaaaataaaGATGCATTGGAATTAAAATCAGCTGTTTCCTGTTGTCTCTGTACTGAGGATTAAC
>TU171437
CTCTACACTGCAGGCTGGTTTTGCTGTGAACATTACAAATCTACCCCATAGCTGTTAgtattatgctttgtattttaccTTTAAATACCTGAGTAATTCTGCTATGACCTGATTGTAATCGAGCAAAATACCATGCGCACTTGTAATTCAGACTCACTCAAGACCACACCAGAGAAGAAAAACCTGCTACCATTGGCCATGATGCAACCATGGTAATTATGTGTGGttaatgacaaacaaacacacacacacacacacacacacacacacacactcacacaatgaCACAGTAACAAGCAGTATGGTTTGGCTATTTGGCATCGGCTTCACAGATCCCAACCTCACCCCATCCAGGAAGGAGGATCGTCACTCCACGCCACGCCACCCCACCCTACCCTCCCTAGTACCCAGAGCTATATATAACGCAGTGCTGAGAGAGTCTCATTCACACAACCAGCTTTTCTCATTTCTACCTGAGCAGactCCACTATCCTACACTGACCATGTCTCTGACTGACGCTGTGCGCATCGTGTCCGAGGTGTTCAAGAAGTACGCCTCTGAGGACCAGCAGAAGGACACGCTGAGCCCAGATGAGCTCAAGAAACTGCTGAAGGCTGAGTGCAGCAAGAAGggAACAGACTGCAGTTCAAAGTTGAGCGAGGTGATGAAACGTCTGGATAACAACAAGGATGGACAGATCGACATCGTGGAGTTCGGCACTCTGATCGGCATGATGGCCAAGCGaatgtgagagaaagagagacaccaCCCCCCGTCTGCTGGAGAGTGAGGgatggagggaaggagagggagagaggagggagagaagggtgGAGTTTATATCttctctgtaaaaaaacaaagatgaaaataaaGATGCATTGGAATTAAAATCAGCTGTTTCCTGTTGTCTCTGTACTGAGGATTAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012385 True 958 mRNA 0.53 7 17208815 17217639
TU171433 False 762 TUCP 0.50 3 17213844 17214963
TU171434 False 811 TUCP 0.48 4 17208778 17211050
TU171437 False 931 lncRNA 0.47 3 17208778 17211050

Neighbor

gene id symbol gene type direction distance location
AMCG00012373 NA coding downstream 126571 17080907 ~ 17082207 (-)
AMCG00012371 NA coding downstream 218669 16985862 ~ 16990109 (-)
AMCG00012364 LOC108433880,LOC103372036,LOC108256189,LOC108256188,LOC103039167,LOC104942599 coding downstream 242907 16960383 ~ 16965871 (-)
AMCG00012361 NA coding downstream 256947 16945305 ~ 16951831 (-)
AMCG00012362 NA coding downstream 284794 16922806 ~ 16923984 (-)
AMCG00012384 NA coding upstream 28451 17246090 ~ 17254514 (-)
AMCG00012383 NA coding upstream 47124 17264763 ~ 17267311 (-)
AMCG00012390 NA coding upstream 126715 17344354 ~ 17364449 (-)
AMCG00012394 NA coding upstream 242284 17459923 ~ 17465336 (-)
AMCG00012399 adar coding upstream 290285 17507924 ~ 17511092 (-)
G136411 NA non-coding downstream 10076 17197235 ~ 17198702 (-)
G136409 NA non-coding downstream 14796 17192741 ~ 17193982 (-)
G136391 NA non-coding downstream 60692 17145422 ~ 17148086 (-)
G136392 NA non-coding downstream 79479 17126206 ~ 17129299 (-)
G136383 NA non-coding downstream 104321 17102403 ~ 17104457 (-)
G136423 NA non-coding upstream 42349 17259988 ~ 17261894 (-)
G136435 NA non-coding upstream 71460 17289099 ~ 17290083 (-)
G136437 NA non-coding upstream 72501 17290140 ~ 17290396 (-)
G136450 NA non-coding upstream 85287 17302926 ~ 17310050 (-)
G136470 NA non-coding upstream 97269 17314908 ~ 17318479 (-)
G136412 NA other downstream 5545 17201774 ~ 17203233 (-)
G136378 NA other downstream 74871 17093499 ~ 17133907 (-)
AMCG00012372 tpm3,LOC106570192 other downstream 110053 17064556 ~ 17098725 (-)
AMCG00012365 NA other downstream 294093 16911492 ~ 16914685 (-)
G136223 LOC105892008 other downstream 508987 16699475 ~ 16699791 (-)
G136408 NA other upstream 16289 17233928 ~ 17242827 (-)
AMCG00012391 NA other upstream 162541 17380180 ~ 17381595 (-)
AMCG00012393 NA other upstream 198935 17416574 ~ 17434113 (-)
AMCG00012392 NA other upstream 257009 17474648 ~ 17483359 (-)
G136544 NA other upstream 285979 17503618 ~ 17503986 (-)

Expression


Co-expression Network