AMCG00012386


Basic Information

Item Value
gene id AMCG00012386
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17374960 ~ 17380121 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012386
CGGAAGAGAGAGTTCTGCGTTTCCTTGTCCACGCCGCCCGAGATCTGTACACGCACCCATAGCTGCTAATCGTCGATATTGTTGATTTTAATCgagatttatttacattttcaatcacCCAACTATTCGTGTTGTTTCGTCCTATGGATTTCCTGCAGGTGCTGTCATGGGCTTGTATAGTGTTCACTCTGGGCATGTTCTCCACTGGACTTACTGACCTTCGGAGAATGGTGTCCAGTGGCAGTGCCGAAAATGTCCAGTTCCTGCCCTTTCTGACCACTTGCCTGAAtaaCCTGGGCTGGCTGTACTACGGGACTCTGAAGAGGGACGGCACCCTGGTCATCGTGAACAGCATCGGAGCGGTGCTGCAGGCGGTCTACATCTCGGCGTTCTGCctgtacacacagcacaggAGGCGGGTGCTGATGCAGACGGCGCTGGCGGCGGCGGggctgtgtgtgggggtgcTGTACTTCACGCAGCTGCTCTCGGACCCGGACACTcgcctcagccagctgggcctgACCTGCTCCCTCTTCACCATCAGCATGTACCTGTCACCCCTCACCGACCTGGTGCAGATCGTGCGCAGTAGGTCAGTGAAGTGTCTGTCCTACTCGCTGACTGTGGCCACATTCCTGACCTCCACTTCCTGGACTCTGTATGGACTGCAGCTGCAGGATCTGTACATCatggttccCAATACTCCAGGCATAGTGACCAGCCTCATCCGATTCTGGCTGTTCTGGAGGTTCACGCCCAGCTCCCCAGAGAAGTTCTCCTATAGGCCGCTGCAAGCCTGAGGGGCGGGGCTACCCGTCGCAATAGAAAGGACTGCATCGCCAGCGCCGTGACCTCTGCCCTCTGACCTCGGAACTCCCGCGAGGTCAACTCCGTGGCAACACGCAGAGATTCTAGAGGCCTCTGCAGTTGCCTGTAGCGACAATCACTACTCCTTCAACTGCCAAAGATTGATGAAcgaatgacacacacacacacacacacacacacacacagatactccaatacacactgacacacacacacagatatatatacacaaatattcaCAGACACCCCAACATGGACACGCAACTTTCTCCCAAATCCACTGTTATACTCCCAGCCCcccacacactacacacacacacaccacactgtgtgttaataataaatgtaaatagtttttctaaaagtatatatatatatatatatatatatatatatatagtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtattatgcAATCGTTTACAATGTGCAGTGTAGCTCCAGGTCTGTCTGTTCTTCcttaacctttttattttattcgaCTTTTTCGACTTTTACTCCACTTTGCATCTCTGAGAGAAATTGAATTTGTACTGGACCGTAATTGGCATTGAAGAGATTAGAAGCTGAAGACGGCAACACAGGGCCACTGTCCTCCGACTCGTGTCCGAACCAGCCCGTGTGAACATGACCGACAATAAAGTGCCTTCTGTTGTTATTGCAAACaaaatctgtctgtctgtctctccagctcccttTCTCCCCATCTGTCGTTCTCGCACCCTCTCCTCCAGTTCTCTGGTGGAAATCATTTCGCTCCTcgctccctctgtctctctctccatctgcccCTCTTCCTTGGTCTGCCTTTCGTTCTTATGTTCCTTCTCcatctgcctccctctctccctccctattatacaatgtaaaatc

Function

GO:

id name namespace
GO:0008643 carbohydrate transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15382 SLC50A, SWEET; solute carrier family 50 (sugar transporter)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012386 True 1730 mRNA 0.50 6 17374960 17380121

Neighbor

gene id symbol gene type direction distance location
AMCG00012388 krtcap2 coding upstream 3407 17369263 ~ 17371553 (+)
AMCG00012389 LOC107549236 coding upstream 85065 17269066 ~ 17289895 (+)
AMCG00012377 NA coding upstream 116361 17255412 ~ 17258599 (+)
AMCG00012379 NA coding upstream 132131 17238280 ~ 17242829 (+)
AMCG00012382 NA coding upstream 140026 17231345 ~ 17234934 (+)
AMCG00012395 chrnb2,chrnb2b,LOC106575520,LOC104959165 coding downstream 117333 17497454 ~ 17504572 (+)
AMCG00012396 ilf2,LOC106588321,LOC106569884 coding downstream 149652 17529773 ~ 17537629 (+)
AMCG00012397 NA coding downstream 172465 17552586 ~ 17578771 (+)
AMCG00012406 ints3,LOC106588323 coding downstream 201255 17581376 ~ 17598072 (+)
AMCG00012404 syt11 coding downstream 225612 17605733 ~ 17609903 (+)
G136458 NA non-coding upstream 34224 17339578 ~ 17340736 (+)
G136457 NA non-coding upstream 42390 17330794 ~ 17332570 (+)
G136444 NA non-coding upstream 69961 17300527 ~ 17304999 (+)
G136436 NA non-coding upstream 84431 17290145 ~ 17290529 (+)
G136351 NA non-coding upstream 202854 17164976 ~ 17172106 (+)
G136486 NA non-coding downstream 21898 17402019 ~ 17402360 (+)
G136490 NA non-coding downstream 39094 17419215 ~ 17462685 (+)
G136538 NA non-coding downstream 108229 17488350 ~ 17488827 (+)
G136539 NA non-coding downstream 109198 17489319 ~ 17489544 (+)
G136564 NA non-coding downstream 242992 17623113 ~ 17635961 (+)
G136341 NA other upstream 110556 17127155 ~ 17264404 (+)
AMCG00012374 NA other upstream 245621 17126013 ~ 17129339 (+)
G136296 NA other upstream 374871 16963330 ~ 17000089 (+)
G136258 NA other upstream 499360 16871838 ~ 16875600 (+)
G136255 NA other upstream 507512 16866537 ~ 16867448 (+)
AMCG00012387 NA other downstream 4815 17384936 ~ 17388799 (+)
G136489 NA other downstream 31640 17411761 ~ 17476097 (+)
G136499 NA other downstream 79363 17459484 ~ 17466059 (+)
AMCG00012401 adar other downstream 129251 17509372 ~ 17522821 (+)
G136558 NA other downstream 167247 17547368 ~ 17547968 (+)

Expression


Co-expression Network