AMCG00012388 (krtcap2)


Basic Information

Item Value
gene id AMCG00012388
gene name krtcap2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17369263 ~ 17371553 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012388
TGCTCAGTGTCTCCGTGTCGCGTTGAAGTGGGAGCCGCGGTTTGGGAGAAAATCACCCTGAAGACCCAAACCAAGAGACGCCTCGACCTGCGATGGCGGTCAGTACCGGTCCCTCTCTCGTGCTCTCCTCCCTGCTGTCCGTGCTGCTGTTCGCCGGGATGCAGATGTTCAGCCGACAGCTGGGCTCCACCGAGTGGCTGACCATCCTGGGCGGCTTCCTCGGCTCCGCCCTCTTCGTCTGCTCCCTCACTGCCTTCAACAACCTGGAGAACCTGCTGTTTGGGAAGGGTTTCCAGGCCAAGATCTTCCCAGAGAtccTGGTGTGTATGAGTCTGGCTCTGTTCGCCTCAGGCTTGGTGCACCGTGTCTGTGTCACCACCTGtctgATCTTTTCTCTGTTCTCCGTGTACTACATCAATAAAGTTTCGGCCGCGATGTACCAAGCTGCCGTTCCCATGGCGACCCCTGCCAAGGCCGCCGGCAAAGGGAAGAGGAAGAACTGAGGAAGATCAATCAAAGGGGAACCTCCCACTAAGGCTGGCCAATCACGGCACGCGCAGAGCAGGCAGAGCCACCGCCGCCGGCCAATCAAATCGCGGGGCCGCGTTCCGTAACCCACATTCCACATTCCACAGTTCTGATTCTGTGATTGGACAGCACAGAGACTGGGCTAATGTTTAGGCCaggcatttttttataattgaaatgcaaaagtataaaaaaataaagaaataaagaaaacaaaacaaaaaactagtttgtg

Function

symbol description
krtcap2 Predicted to be involved in protein N-linked glycosylation via arginine. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in axis; cleithrum; liver; and polster. Orthologous to human KRTCAP2 (keratinocyte associated protein 2).

NR:

description
PREDICTED: keratinocyte-associated protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012388 True 763 mRNA 0.54 5 17369263 17371553

Neighbor

gene id symbol gene type direction distance location
AMCG00012389 LOC107549236 coding upstream 79368 17269066 ~ 17289895 (+)
AMCG00012377 NA coding upstream 110664 17255412 ~ 17258599 (+)
AMCG00012379 NA coding upstream 126434 17238280 ~ 17242829 (+)
AMCG00012382 NA coding upstream 134329 17231345 ~ 17234934 (+)
AMCG00012378 NA coding upstream 146849 17221383 ~ 17222414 (+)
AMCG00012386 NA coding downstream 3407 17374960 ~ 17380121 (+)
AMCG00012395 chrnb2,chrnb2b,LOC106575520,LOC104959165 coding downstream 125901 17497454 ~ 17504572 (+)
AMCG00012396 ilf2,LOC106588321,LOC106569884 coding downstream 158220 17529773 ~ 17537629 (+)
AMCG00012397 NA coding downstream 181033 17552586 ~ 17578771 (+)
AMCG00012406 ints3,LOC106588323 coding downstream 209823 17581376 ~ 17598072 (+)
G136458 NA non-coding upstream 28527 17339578 ~ 17340736 (+)
G136457 NA non-coding upstream 36693 17330794 ~ 17332570 (+)
G136444 NA non-coding upstream 64264 17300527 ~ 17304999 (+)
G136436 NA non-coding upstream 78734 17290145 ~ 17290529 (+)
G136351 NA non-coding upstream 197157 17164976 ~ 17172106 (+)
G136486 NA non-coding downstream 30466 17402019 ~ 17402360 (+)
G136490 NA non-coding downstream 47662 17419215 ~ 17462685 (+)
G136538 NA non-coding downstream 116797 17488350 ~ 17488827 (+)
G136539 NA non-coding downstream 117766 17489319 ~ 17489544 (+)
G136564 NA non-coding downstream 251560 17623113 ~ 17635961 (+)
G136341 NA other upstream 104859 17127155 ~ 17264404 (+)
AMCG00012374 NA other upstream 239924 17126013 ~ 17129339 (+)
G136296 NA other upstream 369174 16963330 ~ 17000089 (+)
G136258 NA other upstream 493663 16871838 ~ 16875600 (+)
G136255 NA other upstream 501815 16866537 ~ 16867448 (+)
AMCG00012387 NA other downstream 13383 17384936 ~ 17388799 (+)
G136489 NA other downstream 40208 17411761 ~ 17476097 (+)
G136499 NA other downstream 87931 17459484 ~ 17466059 (+)
AMCG00012401 adar other downstream 137819 17509372 ~ 17522821 (+)
G136558 NA other downstream 175815 17547368 ~ 17547968 (+)

Expression


Co-expression Network