AMCG00012401 (adar)


Basic Information

Item Value
gene id AMCG00012401
gene name adar
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17509372 ~ 17522821 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012401
ATGGCACTGACCCAGGGTGACGGAGTGCAGGTAGACGGGCTGCAGGAAGTGGCTGAGCAGCGCCCCCTGCAGGCCCAGCACGTTCCAGCGCAGGATCTTCTCATTGTTCGCAGCCGCTCGCCGTGCTGGATGCCGTCCCAGGTGGGCACGATGTCGCTGGACTCCACCGGGATGGTGCCCTCAcctgggggggcggggggaatGGGAGAAGAAGAGATTGATGCCATCAGAGAAACCCTGATCAcgtggaggaggaagagaggcgACCAGAGGACAGGGGGCAGCGGGAGGGACTCACCGTTCTCCACCTTGGTCCTCAGCTTGCCCTGCTTGGCGTTCTCAAACAGAGGCTGGTGCCCCGGCCCCGCCCCTGCCGCCGGCTCACTGCACGACTTGTCGAACAGAGCGCCGTCGCCACAGGGGGCcgtactgagagagagagggGCTGACCACCGTGCCCAGGCTGTCCCCTCTCCTCATGACGAAGGTGGCCAGGATCTTGCGTCCCAGCAGGCTGTGCTGTATGCGGGCGGTCAGCGCATTGAAGCGCTGGTGAAGGTGGGTGACCGGCTCTTCCCGCCTGTCGTGGCGCACAGTAAGAAGCTGGCCAGGCAGATGGCAGCGGAGGCAGCTGTGCAGGAGCTGCTGGGAGAAGGACAGCACTCCCTCACGCCCAAGGCACTGACGCCCCCTCACGCCCAAGGCACTGACGCCCTGACGCTCCCTCAAGCCCAAGGCACTAACGCTCTGACACTCCCTAACCCCCGATGCATGCCTATCCAGTACAAGACCTATCCGATTGCAATTGAACCAGCGACGCTAacgctgccccccccccccccacagccgcCGGCACTGAGTTTTGAGCCCCAGGACGCCCCCCCTGCCCTGCCAGCTGCGCCGTTGCTGCCCCCCCTGACGGTGGCGGAGCTGGAGGCAGCCCACGCGGCCGGGGTGGGTGACCTCATCAACCACCTGAACAAGAACGCCATCAGCGGTCTGCTGGAGTATGCGCGCTCCAAGGGCTTCGGCGCCGAGATCAAGCTGGTGGAGCAGGCCGGACCCCCCCATCAACcccgGTTCACGTACCAGGCAAAGCTGGGGGGGCGCTGGTTCCCCGCGGTGTGTGCCAGCAGTAAGAAGCAGGGCAAGCAGGAGGCAGCCGACGCGGCGCTGCGGGTGCTGATcggggaggcagagagagccGCCCGCACCACCCCCCTTGCCCCTGAGGCGCTGGCGCTCTTCTGGCTGAATTCCATCAGCAGGCTGACCGGGTTCTTGCCCCCGGGGAGGGAGCGCGACACGGCCACCGCCCCGCCCTCCGGCACCATGCCTTCCGAGGCCACGCCCACCAGGGCCACACCCTGCACAACAATGACACACGGTCACACACGCGGCCCCGCCCCTCTGACAGCCCCACTCCGCCTTGGCCCCTCTCTCACCGCGGGGTCGGCAGAGGGGTCGGGGTCCTGCGCCCACAGCTCCTCCCCGGCCTCCAGCTCCCTCTGCAGCAGCCGCAGCGCCTCAGCCGCCGCCTCCTTCTTTGCCGTCTTCTTGCTGGACGCCTCAGCCACTGGCAATCTGCGGCCGCCCAGCTCCACCTGCATCCTGAACCTGGGGGGGGACGGGGGTCAGAGCAGTGCAAGAGTATGCTGGGCGTACTCCAGCAGCCCGCTCACCGGGTTCTTGGCCCGGACCTCCAGCAGCTTCCGCAGCGCCGCCGAGCCGCCGGCCCCCTCCTGCGCCACCGCCCCCCCGGTGCCGCCGCCCACCATGGCGTTCAGGAACTCCGGGATCTCGTCCGAGGCCCACTGCCCGTTCTGCCCCAGCTCCCCGAGTGGGGACGAGGTGGGCTGCAGTTCTGGATCCAACTTGGGCTTCTTGCATCggacctcctcctccttctcctcttcatcttcctcctcctgcttGGCAGCGTTGTGTGGAGGTGGTGGCTGCTGTGGCTGTTCCCCGTTGCCCATTTCCTGTCCGGCTTCCCCGGCGCCACCCTCCTCCATCAGAGCAGGAAGTGGGACAGCATCTTCCAGATGGGCAGCGGACGGCGGCAGCATCACCGAGGCAACAGCGGCAGCCgtgggggcgggggcggggccGGGGAGCTGGGCCTTCCTCTGGCGCTCCAGGCGCTGGCGCTTGTGGTCAGTGAGCTCCCACAGGTGGGGCGTGATGGCGGCATCCCGCGAGACGTCACCCTGCTTCTCCAGGACGTACAGCGTGGGGTTCACCTGCTTGGCCGTGCGCAGGCCCAGGTTCTTGGCGATGCCCAGGGCATTGCAGCGGCCCGACGTCAGCAGGTACTGGCACACGCGCTCCCGGAtgtcctccctctccccctccatctctATCTCCAAGTCTGGGAGCGAGCCGTCCGTGTCAGAGTCCTGCCCAGAGTCCAAATCAAAATCTGGGAacacttcttcttcttcttcttcttcttcttcttcctcctcctcctcctcctcctcctcctctgcctcctcctctgcctcctcctctgcctcctccttctcctctctctccctctgtccctgctTTCCCCCCAAGCCCCTGCACTCCTCCTCTGGTCCTACCTCTCTCCGCAGGCTCCAGAGAGGAGGGACGTCCCCGTGCTTCTGGGTGCGGCCCTGGAGCTGCAGCGAGTATAGGGCCCGGTTCACCACTGCCTTGGGAAAGCTGAGGCACCTGACCCGGGTCCAGGGACGCCAGACAGTCCAGCACCAAGCCCTGCACCAGCCGGTCGTCGGCGTAAGGACGGGCCCCAGCCGCACTACGTGGATTGGGCGAGTTGCGACGGTCGCCGAGGGCCAGGTCCCCCAGGCTCTGGGACAGGCAGTCGACGGGGTCGGCACACGGGCTTCTCCGCCCGCCTCTGTGGTACCGGTTCTGGCCAGGGTACTGGGCCCAGTTCTGAGCGTGAGTGTGGCTGTATGTGTAGTCTCCCCTTCCCCTGCTGTAGCCCCTGCAGTGCCCCCTCTGGCCAGGGCTGGCACTGTGGGAGTGGGCGGAGTACGAGCTGTGGTACCCGCCTCGGTGCTGGGGTGCTCTGGGCCTCTTTCCTGGCCCGGTTCCGACCCCCCCGCTGCTGCCGCCGCTCTTGCCGCTCTCGTTCTCCTCGCCTGCGTCCCTCTCCGCCACTCTGCTGGGCCAGGCCGGGCCTTGGAACTGGGGAGCCTGTGTGTTCTGCCCCCGCAGGAACTGCACCTGCTGTAG
>TU171630
ctccctctctcctttctcaCCTCTACCCCTCTCTCCACTCCCTCCCTCAGGTTCACCTTCCAGGTGAAGGTGGGTGACCGGCTCTTCCCGCCTGTCGTGGCGCACAGTAAGAAGCTGGCCAGGCAGATGGCAGCGGAGGCAGCTGTGCAGGAGCTGCTGGGAGAAGGACAGCACTCCCTCACGCCCAAGccgcCGGCACTGAGTTTTGAGCCCCAGGACGCCCCCCCTGCCCTGCCAGCTGCGCCGTTGCTGCCCCCCCTGACGGTGGCGGAGCTGGAGGCAGCCCACGCGGCCGGGGTGGGTGACCTCATCAACCACCTGAACAAGAACGCCATCAGCGGTCTGCTGGAGTATGCGCGCTCCAAGGGCTTCGGCGCCGAGATCAAGCTGGTGGAGCAGGCCGGACCCCCCCATCAACcccgGTTCACGTACCAGGCAAAGCTGGGGGGGCGCTGGTTCCCCGCGGTGTGTGCCAGCAGTAAGAAGCAGGGCAAGCAGGAGGCAGCCGACGCGGCGCTGCGGGTGCTGATcggggaggcagagagagccGCCCGCACCACCCCCCTTGCCCCTGAG

Function

symbol description
adar Predicted to enable double-stranded RNA adenosine deaminase activity; double-stranded RNA binding activity; and tRNA-specific adenosine deaminase activity. Predicted to be involved in RNA processing and adenosine to inosine editing. Predicted to act upstream of or within defense response to virus. Predicted to be active in cytoplasm and nucleolus. Is expressed in brain. Human ortholog(s) of this gene implicated in Aicardi-Goutieres syndrome; Human papillomavirus infectious disease; dyschromatosis symmetrica hereditaria; and liver cirrhosis. Orthologous to human ADAR (adenosine deaminase RNA specific).

NR:

description
PREDICTED: double-stranded RNA-specific adenosine deaminase

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0003723 RNA binding molecular_function
GO:0003726 double-stranded RNA adenosine deaminase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012401 True 3234 mRNA 0.67 10 17509372 17522821
TU171630 False 576 TUCP 0.68 3 17517450 17518398

Neighbor

gene id symbol gene type direction distance location
AMCG00012395 chrnb2,chrnb2b,LOC106575520,LOC104959165 coding upstream 4800 17497454 ~ 17504572 (+)
AMCG00012386 NA coding upstream 129251 17374960 ~ 17380121 (+)
AMCG00012388 krtcap2 coding upstream 137819 17369263 ~ 17371553 (+)
AMCG00012389 LOC107549236 coding upstream 219477 17269066 ~ 17289895 (+)
AMCG00012377 NA coding upstream 250773 17255412 ~ 17258599 (+)
AMCG00012396 ilf2,LOC106588321,LOC106569884 coding downstream 6952 17529773 ~ 17537629 (+)
AMCG00012397 NA coding downstream 29765 17552586 ~ 17578771 (+)
AMCG00012406 ints3,LOC106588323 coding downstream 58555 17581376 ~ 17598072 (+)
AMCG00012404 syt11 coding downstream 82912 17605733 ~ 17609903 (+)
AMCG00012407 rit1,LOC107672884 coding downstream 91673 17614494 ~ 17621187 (+)
G136539 NA non-coding upstream 19828 17489319 ~ 17489544 (+)
G136538 NA non-coding upstream 20545 17488350 ~ 17488827 (+)
G136490 NA non-coding upstream 46687 17419215 ~ 17462685 (+)
G136486 NA non-coding upstream 107012 17402019 ~ 17402360 (+)
G136458 NA non-coding upstream 168636 17339578 ~ 17340736 (+)
G136564 NA non-coding downstream 100292 17623113 ~ 17635961 (+)
G136568 NA non-coding downstream 125807 17648628 ~ 17649107 (+)
G136571 NA non-coding downstream 140612 17663433 ~ 17664170 (+)
G136718 NA non-coding downstream 378087 17900908 ~ 17901656 (+)
G136842 NA non-coding downstream 739076 18261897 ~ 18269507 (+)
G136489 NA other upstream 33275 17411761 ~ 17476097 (+)
G136499 NA other upstream 43313 17459484 ~ 17466059 (+)
AMCG00012387 NA other upstream 120573 17384936 ~ 17388799 (+)
G136341 NA other upstream 244968 17127155 ~ 17264404 (+)
AMCG00012374 NA other upstream 380033 17126013 ~ 17129339 (+)
G136558 NA other downstream 24547 17547368 ~ 17547968 (+)
G136566 NA other downstream 122820 17645641 ~ 17646905 (+)
G136569 cks1b,LOC103032043,LOC108433716,LOC103358762 other downstream 126444 17649265 ~ 17653462 (+)
AMCG00012417 NA other downstream 232599 17755420 ~ 17760282 (+)
G136641 NA other downstream 241324 17764145 ~ 17767531 (+)

Expression


Co-expression Network