Item | Value |
---|---|
gene id | AMCG00012413 |
gene name | ssr2,LOC106570196,LOC106588555,LOC107748705 |
gene type | coding |
species | bowfin (Amia calva) |
category of species | ecological fish |
Item | Value |
---|---|
chromosome id | CM030138.1 |
NCBI id | CM030138.1 |
chromosome length | 24262032 |
location | 17689118 ~ 17691283 (+) |
genome version | AmiCal1_2021_bowfin_Genome |
symbol | description |
---|---|
ssr2 | Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human SSR2 (signal sequence receptor subunit 2). |
description |
---|
PREDICTED: translocon-associated protein subunit beta isoform X1 |
id | name | namespace |
---|---|---|
GO:0005783 | endoplasmic reticulum | cellular_component |
GO:0016021 | integral component of membrane | cellular_component |
id | description |
---|---|
K13250 | SSR2; translocon-associated protein subunit beta |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
AMCG00012413 | True | 959 | mRNA | 0.61 | 6 | 17689118 | 17691283 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
AMCG00012410 | NA | coding | upstream | 647 | 17683394 ~ 17688471 (+) |
AMCG00012402 | NA | coding | upstream | 9153 | 17676665 ~ 17679965 (+) |
AMCG00012403 | NA | coding | upstream | 12762 | 17667343 ~ 17676356 (+) |
AMCG00012405 | NA | coding | upstream | 26361 | 17657458 ~ 17662757 (+) |
AMCG00012407 | rit1,LOC107672884 | coding | upstream | 67931 | 17614494 ~ 17621187 (+) |
AMCG00012412 | NA | coding | downstream | 8863 | 17700146 ~ 17713310 (+) |
AMCG00012411 | NA | coding | downstream | 39714 | 17730997 ~ 17751455 (+) |
AMCG00012418 | NA | coding | downstream | 115276 | 17806559 ~ 17814564 (+) |
AMCG00012428 | NA | coding | downstream | 246654 | 17937937 ~ 17941562 (+) |
AMCG00012429 | NA | coding | downstream | 311356 | 18002639 ~ 18006774 (+) |
G136571 | NA | non-coding | upstream | 24948 | 17663433 ~ 17664170 (+) |
G136568 | NA | non-coding | upstream | 40011 | 17648628 ~ 17649107 (+) |
G136564 | NA | non-coding | upstream | 53157 | 17623113 ~ 17635961 (+) |
G136539 | NA | non-coding | upstream | 199574 | 17489319 ~ 17489544 (+) |
G136538 | NA | non-coding | upstream | 200291 | 17488350 ~ 17488827 (+) |
G136718 | NA | non-coding | downstream | 209625 | 17900908 ~ 17901656 (+) |
G136842 | NA | non-coding | downstream | 570614 | 18261897 ~ 18269507 (+) |
G136848 | NA | non-coding | downstream | 603932 | 18295215 ~ 18317076 (+) |
G136866 | NA | non-coding | downstream | 742287 | 18433570 ~ 18470784 (+) |
G136873 | NA | non-coding | downstream | 781950 | 18473233 ~ 18474916 (+) |
G136569 | cks1b,LOC103032043,LOC108433716,LOC103358762 | other | upstream | 35656 | 17649265 ~ 17653462 (+) |
G136566 | NA | other | upstream | 42213 | 17645641 ~ 17646905 (+) |
G136558 | NA | other | upstream | 141150 | 17547368 ~ 17547968 (+) |
AMCG00012401 | adar | other | upstream | 166297 | 17509372 ~ 17522821 (+) |
G136499 | NA | other | upstream | 223059 | 17459484 ~ 17466059 (+) |
AMCG00012417 | NA | other | downstream | 64137 | 17755420 ~ 17760282 (+) |
G136641 | NA | other | downstream | 72862 | 17764145 ~ 17767531 (+) |
AMCG00012423 | LOC102799202,LOC107564869 | other | downstream | 100968 | 17792251 ~ 17795244 (+) |
G136658 | NA | other | downstream | 149650 | 17840933 ~ 17843921 (+) |
G136720 | cct3,tcpg,LOC107597996,LOC107587818,LOC107741740,LOC107671634,LOC107704884 | other | downstream | 211549 | 17902832 ~ 17903810 (+) |