AMCG00012413 (ssr2,LOC106570196,LOC106588555,LOC107748705)



Basic Information


Item Value
gene id AMCG00012413
gene name ssr2,LOC106570196,LOC106588555,LOC107748705
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17689118 ~ 17691283 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00012413
GTGGGCCGGCGCCTGCGCACTCGCTCGCCCTACGTCACAGGGAGCGAGACCGTGGTGCTTGCTGCGCCTGCGCGCTTGCAGTCCTTTCCTGTGAAGAACCGAGCGACAGAAGGTGGTGTAACTTGTGTTCTCCAGgtgttatgtgtgtgttataacTGTGTAATTCCCTCCCCCGGCCAGATGAGGGTGCTgtggctgtgtgctgtgtttgcCGTGGTGGCGCTGGGGCGGGCGGAGGAGGGGGCCCGGCTGCTGGCGTCCAAGTCTCTGCTGAACCGCTACGCCGTGGAGGGCCGAGACCTCACCCTGCAGTACAACATCTACAACGTGGGCACCAGCGCTGCTCTGGAGGTTGAGCTCTCTGACGACTCCTTCCCCCCGGAGGACTTCGGCATCGTGTCGGGAATGCTCAACGTCAAGTGGGACCGGATCGCCCCGTATCCTTCCACACGGCCTCTAGTCAGTTTGACCCTTGACCCCTCTCTCAGCGCCAGCAACGTGTCTCACACTGTGGTGCTGCGCCCCCTGAAGGCCGGCTACTTCAACTTCACCTCCGCCAGCGTCAGCTACCTGGCACAGGAGGGAGGCCAGGTCGTGgtGGGCTACACCAGTGCCCCTGGTCAGGGTGGCATCCTGGCTCAGAGAGAGTTTGACCGGCGTTTCTCTCCACATTATCTGGACTGGGCGGCCTTCGGGGTCATGACCCTGCCCTCTATCGGCATTCCCCTGCTGCTTTGGTACTCGAGCAAGAGGAAGTACGACACACCCAAGAGCAAGAAGAACTGAGGGACCAGCCTGGGGGGGTAACTGGACTGAcctgggagggggtggggggtatatATGCAGGGTTTGGTTGTGGGAGTTAGTTGGTTTTTAGGGTCTCGGCCCCTCTGGGGTTCCTGCAGACAGGAATACAACACTCGGAGAACCTGAAAACCAACATCCagactgggtggggg

Function


symbol description
ssr2 Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human SSR2 (signal sequence receptor subunit 2).

NR:

description
PREDICTED: translocon-associated protein subunit beta isoform X1

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K13250 SSR2; translocon-associated protein subunit beta

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00012413 True 959 mRNA 0.61 6 17689118 17691283
Loading

Neighbor


gene id symbol gene type direction distance location
AMCG00012410 NA coding upstream 647 17683394 ~ 17688471 (+)
AMCG00012402 NA coding upstream 9153 17676665 ~ 17679965 (+)
AMCG00012403 NA coding upstream 12762 17667343 ~ 17676356 (+)
AMCG00012405 NA coding upstream 26361 17657458 ~ 17662757 (+)
AMCG00012407 rit1,LOC107672884 coding upstream 67931 17614494 ~ 17621187 (+)
AMCG00012412 NA coding downstream 8863 17700146 ~ 17713310 (+)
AMCG00012411 NA coding downstream 39714 17730997 ~ 17751455 (+)
AMCG00012418 NA coding downstream 115276 17806559 ~ 17814564 (+)
AMCG00012428 NA coding downstream 246654 17937937 ~ 17941562 (+)
AMCG00012429 NA coding downstream 311356 18002639 ~ 18006774 (+)
G136571 NA non-coding upstream 24948 17663433 ~ 17664170 (+)
G136568 NA non-coding upstream 40011 17648628 ~ 17649107 (+)
G136564 NA non-coding upstream 53157 17623113 ~ 17635961 (+)
G136539 NA non-coding upstream 199574 17489319 ~ 17489544 (+)
G136538 NA non-coding upstream 200291 17488350 ~ 17488827 (+)
G136718 NA non-coding downstream 209625 17900908 ~ 17901656 (+)
G136842 NA non-coding downstream 570614 18261897 ~ 18269507 (+)
G136848 NA non-coding downstream 603932 18295215 ~ 18317076 (+)
G136866 NA non-coding downstream 742287 18433570 ~ 18470784 (+)
G136873 NA non-coding downstream 781950 18473233 ~ 18474916 (+)
G136569 cks1b,LOC103032043,LOC108433716,LOC103358762 other upstream 35656 17649265 ~ 17653462 (+)
G136566 NA other upstream 42213 17645641 ~ 17646905 (+)
G136558 NA other upstream 141150 17547368 ~ 17547968 (+)
AMCG00012401 adar other upstream 166297 17509372 ~ 17522821 (+)
G136499 NA other upstream 223059 17459484 ~ 17466059 (+)
AMCG00012417 NA other downstream 64137 17755420 ~ 17760282 (+)
G136641 NA other downstream 72862 17764145 ~ 17767531 (+)
AMCG00012423 LOC102799202,LOC107564869 other downstream 100968 17792251 ~ 17795244 (+)
G136658 NA other downstream 149650 17840933 ~ 17843921 (+)
G136720 cct3,tcpg,LOC107597996,LOC107587818,LOC107741740,LOC107671634,LOC107704884 other downstream 211549 17902832 ~ 17903810 (+)

Expression


AMCG00012413(ssr2,LOC106570196,LOC106588555,LOC107748705) Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 300.
End of interactive chart.

AMCG00012413(ssr2,LOC106570196,LOC106588555,LOC107748705) Expression in each Bioproject

Bar chart with 7 bars.
AMCG00012413(ssr2,LOC106570196,LOC106588555,LOC107748705) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
End of interactive chart.

Co-expression Network