AMCG00012416


Basic Information

Item Value
gene id AMCG00012416
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17757334 ~ 17764561 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012416
atgggtgaTCGGGGTACGAGAGACTCGGTGTTGCCCAGCCTTGGCCAACAGGGCCACAGTGGAGGTGGGGAGAGGAAGGAAAAAGTGGATGAGAGCAGGACTGGGGGGGGAAGAGACCAGTTGggtggggaagagagagagagagagagagagcaggacagttgggtggaggagagagagagcgagcacaGGACAGTTGGGTGGGgaagagagagcaggacagttGGATGGGGAAGAGAGAAAGCAGGACAGAGCTGTTGTAGAGACGGGTCTGACCTGCAGGGTGGAGTAGAGCGAGCGGCCGTGCTGGCGGTGGAACTGCACCCTGACGCTCAGCAGGTCCTCTTCACTGCGCGGCACGAGCACCCGGAGCAGCGGCCCGGACTGCTGCCCCACGCCCTGCACACACACCCCAACACCGAGCTAGTGCCTGGGCTGAAGAAGGTGCTTTCTGGGGGGGTGCAGGCAGTGCTGCTGGGGCTCATGATGACGCCCCCGGTGTTTGACGCTCACCAGCTCAGGAACGCCATGGAGGGTTTGGGGACGGATGAGCAGACCCTGGCGGAGATCCTATGCACTCGATCGCCGGAGCAGCTGCAACTCATCACTGCCACCTACAGGGAGGAGTTCCAGCGGAGTCTGGAGGAGGACGTGCGCAGTGAGACCAGCCAGGGCTTCAGGGATCTGCTGCTGGCTCTACTGCAGAAGCAGAGGGAGAACATCGCCGGAGGGATCGAATACCCGCTGATCCAGAGGGACGCTAAGGCTCTAGTGGAGTCGGTGAAGCCCAAGTCGAAGCCGTCTCCGGAGCCCTGGATCAGAACGCTGACCCACAGGGACGCTGACCACCTCAACCGCGGTACCCCCAGCAGCGGGGCGGGGGGCTCTCACTccgtgtggAGTCTGGCGGGCCGCTCTGTTGAGGAGACGGTGCAGGCCGCCTTCTCTGGGGACCTGCGACTGGGCCTGCTGATCCTGGttCGCTCCATTAGAAACACGCCCGAGTTGCTGGCGGACACCGTGCACCGAGCACTGAAGCATCACCCACCTTTGTTCGTCATGGCGGCGGCCAGTGCCCGGGCGTCGCGCTCCGGGCGGAAGTTGACGAAAGGGCGGACTGTCCCCAGAGTGCCCCAGCACATCGCCTGA
>TU171825
CGTGCTTGTGTTGCTCTTGCTGTGTTGCTGGTGAATGATGTTATAAATGTTGCCCCATCCTCTCCCCGGTGCAGGAGCTAGTGCCTGGGCTGAAGAAGGTGCTTTCTGGGGGGGTGCAGGCAGTGCTGCTGGGGCTCATGATGACGCCCCCGGTGTTTGACGCTCACCAGCTCAGGAACGCCATGGAGGGTTTGGGGACGGATGAGCAGACCCTGGCGGAGATCCTATGCACTCGATCGCCGGAGCAGCTGCAACTCATCACTGCCACCTACAGGGAGGAGTTCCAGCGGAGTCTGGAGGAGGACGTGCGCAGTGAGACCAGCCAGGGCTTCAGGGATCTGCTGCTGGCTCTACTGCAGAAGCAGAGGGAGAACATCGCCGGAGGGATCGAATACCCGCTGATCCAGAGGGACGCTAAGGCTCTAGTGGAGTCGGTGAAGCCCAAGTCGAAGCCGTCTCCGGAGCCCTGGATCAGAACGCTGACCCACAGGGACGCTGACCACCTCAACCGCGTGTTTGACTGCTTCCAGAGTCTGGCGGGCCGCTCTGTTGAGGAGACGGTGCAGGCCGCCTTCTCTGGGGACCTGCGACTGGGCCTGCTGATCCTGGttCGCTCCATTAGAAACACGCCCGAGTTGCTGGCGGACACCGTGCACCGAGCACTGAAGGTGAGCAgttgcactgtgtgtgtgtgtgtgtgtgtgtgtggttggtgtaTAACGGTGTTGGGGGGG

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012416 True 1149 mRNA 0.64 9 17757334 17764561
TU171825 False 734 TUCP 0.60 7 17759979 17761454

Neighbor

gene id symbol gene type direction distance location
AMCG00012415 NA coding downstream 60049 17691741 ~ 17697285 (-)
AMCG00012408 NA coding downstream 108308 17647172 ~ 17649026 (-)
AMCG00012409 NA coding downstream 121473 17634857 ~ 17635861 (-)
AMCG00012400 NA coding downstream 229800 17526875 ~ 17527534 (-)
AMCG00012398 NA coding downstream 234255 17519655 ~ 17523079 (-)
AMCG00012419 psmd4,LOC102080581,LOC102799202,LOC101479706,LOC103358749 coding upstream 17926 17782487 ~ 17795215 (-)
AMCG00012421 NA coding upstream 64446 17829007 ~ 17842851 (-)
AMCG00012422 NA coding upstream 78647 17843208 ~ 17852603 (-)
AMCG00012420 NA coding upstream 90759 17855320 ~ 17860790 (-)
AMCG00012425 cct3,LOC107741740,LOC107704884,LOC107732470,LOC107671634,LOC107597996,LOC107587818 coding upstream 136995 17901556 ~ 17909492 (-)
G136623 NA non-coding downstream 73151 17682207 ~ 17684183 (-)
G136616 NA non-coding downstream 93164 17663455 ~ 17664170 (-)
G136607 NA non-coding downstream 113576 17643511 ~ 17643758 (-)
G136605 NA non-coding downstream 126506 17628887 ~ 17630828 (-)
G136578 NA non-coding downstream 136147 17620139 ~ 17621187 (-)
G136746 NA non-coding upstream 147677 17912238 ~ 17971853 (-)
G136750 NA non-coding upstream 176911 17941472 ~ 17963244 (-)
G136820 NA non-coding upstream 348115 18112676 ~ 18112903 (-)
G136826 NA non-coding upstream 376190 18140751 ~ 18179687 (-)
G136915 NA non-coding upstream 655448 18420009 ~ 18493905 (-)
G136666 NA other downstream 33266 17720726 ~ 17724068 (-)
G136625 NA other downstream 68822 17686332 ~ 17688512 (-)
G136544 NA other downstream 253348 17503618 ~ 17503986 (-)
AMCG00012392 NA other downstream 273975 17474648 ~ 17483359 (-)
AMCG00012393 NA other downstream 323221 17416574 ~ 17434113 (-)
AMCG00012414 NA other upstream 2849 17767410 ~ 17779122 (-)
AMCG00012437 LOC106580258 other upstream 333616 18098177 ~ 18102329 (-)
G136837 NA other upstream 440814 18205375 ~ 18237256 (-)
G136900 NA other upstream 610769 18375330 ~ 18378297 (-)
AMCG00012459 cdc42se1,LOC106569912,LOC106588345,LOC102790437 other upstream 752275 18516836 ~ 18537125 (-)

Expression


Co-expression Network