AMCG00012423 (LOC102799202,LOC107564869)



Basic Information


Item Value
gene id AMCG00012423
gene name LOC102799202,LOC107564869
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17792251 ~ 17795244 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00012423
ATGCGGGGAAGGGGGGGATGGGCGCCGTATTTTCCTGAGTCATTGACTGACAGGGCGCCGTTTCTCCCCGCGGGCCGGCCGCTGTGGCCCCGCTGTCACAGGGAGAACCTGACCCTTCGACCCCCGGCGAGCTGCGGCACCGACACCAGCACCGGCGGCGGTCGGGTGCGGGACGGTGTGGACAACAGTGAGTACATGCGCAATGGGGACTTCCTGCCCACCCGGCTGCAGGCCCAGCAGGATGCAGTCAACATTGTGTGCCACTCCAAGACCCGCAGCAACCCGGAGAACAACGTGGGCCTCATCACGCTGGCCAATAACTGCGAGAAGCTGATCTTGCCCCGCGGCTGGACGGCGTGCAGCTTGGATAGGATGCGCCCCGTGTCGGGGGTCAGCGTGGTCAGCACCTCGCAGTTACTGGACAGGGACCAGAAGAGAGACAAGACCAACAATTAG
>TU171753
GGGTGAAAGGTCGGACGACGCCAGTGGTCCAATCAGAGGCGTCGTTGTTCCGTCCCGTCACTCAGACAGCAGCAGGGAACTTTCCAAGATGGTGCTCGAGAGTACTATGGTCTGTGTGGACAACAGTGAGTACATGCGCAATGGGGACTTCCTGCCCACCCGGCTGCAGGCCCAGCAGGATGCAGTCAACATTGTGTGCCACTCCAAGACCCGCAGCAACCCGGAGAACAACGTGGGCCTCATCACGCTGGCCAATAACTGCGAGGTGCTGACCACGCTGACCNNNNNNNCGGGGGTCAGCGTGGTCAGCACCTCGCAGTTACTGGACAGGGAC

Function


GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0016307 phosphatidylinositol phosphate kinase activity molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00012423 True 456 mRNA 0.64 4 17792526 17795244
TU171753 False 334 TUCP 0.59 4 17792251 17795217

Neighbor


gene id symbol gene type direction distance location
AMCG00012411 NA coding upstream 40796 17730997 ~ 17751455 (+)
AMCG00012412 NA coding upstream 78941 17700146 ~ 17713310 (+)
AMCG00012413 ssr2,LOC106570196,LOC106588555,LOC107748705 coding upstream 100968 17689118 ~ 17691283 (+)
AMCG00012410 NA coding upstream 103780 17683394 ~ 17688471 (+)
AMCG00012402 NA coding upstream 112286 17676665 ~ 17679965 (+)
AMCG00012418 NA coding downstream 11315 17806559 ~ 17814564 (+)
AMCG00012428 NA coding downstream 142693 17937937 ~ 17941562 (+)
AMCG00012429 NA coding downstream 207395 18002639 ~ 18006774 (+)
AMCG00012432 NA coding downstream 367332 18162576 ~ 18169744 (+)
AMCG00012431 NA coding downstream 378766 18174010 ~ 18179817 (+)
G136571 NA non-coding upstream 128081 17663433 ~ 17664170 (+)
G136568 NA non-coding upstream 143144 17648628 ~ 17649107 (+)
G136564 NA non-coding upstream 156290 17623113 ~ 17635961 (+)
G136539 NA non-coding upstream 302707 17489319 ~ 17489544 (+)
G136538 NA non-coding upstream 303424 17488350 ~ 17488827 (+)
G136718 NA non-coding downstream 105664 17900908 ~ 17901656 (+)
G136842 NA non-coding downstream 466653 18261897 ~ 18269507 (+)
G136848 NA non-coding downstream 499971 18295215 ~ 18317076 (+)
G136866 NA non-coding downstream 638326 18433570 ~ 18470784 (+)
G136873 NA non-coding downstream 677989 18473233 ~ 18474916 (+)
G136641 NA other upstream 24720 17764145 ~ 17767531 (+)
AMCG00012417 NA other upstream 31969 17755420 ~ 17760282 (+)
G136569 cks1b,LOC103032043,LOC108433716,LOC103358762 other upstream 138789 17649265 ~ 17653462 (+)
G136566 NA other upstream 145346 17645641 ~ 17646905 (+)
G136558 NA other upstream 244283 17547368 ~ 17547968 (+)
G136658 NA other downstream 45689 17840933 ~ 17843921 (+)
G136720 cct3,tcpg,LOC107597996,LOC107587818,LOC107741740,LOC107671634,LOC107704884 other downstream 107588 17902832 ~ 17903810 (+)
AMCG00012439 NA other downstream 335040 18130284 ~ 18134381 (+)
G136864 psmb4 other downstream 590045 18385289 ~ 18388306 (+)
AMCG00012460 NA other downstream 744301 18539545 ~ 18544490 (+)

Expression



Co-expression Network