AMCG00012431


Basic Information

Item Value
gene id AMCG00012431
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18174010 ~ 18179817 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012431
CCGCCGCTGGACAGGGATAGCTGTGCATCCGCGGATATACTTTCTCTTCACGGCCGGATCGGGAGACCCTGTGAGCGGCGATGACTGCGCGGAGGCAGGCCCAGCGCGGATAACTTCGGCAGCACCCTTGGACTGAAGACTGAGGACGGTGTCCCTCGCGTCCAACAGGTCCCCCCTCTCCCTGCAGTGGACAATGGAGAGCGACTGCAGGATCTCTGTGATCGGCCTGCCCCCTCCCTCGCCCCTCTGTGCGGGGCTGGCATGTCTGCCCCGCTCCCTTGCCCTCTACAGCCTGCTGTGGAGCCTCGTATCTGTCAGAGTTTTGGGAGTCCCTGTGTCCAGTGAAATGAAGACGCCAGTGATGTCCGCCATGGCCACGCCCTGCTGGCAGGTGGAGGAGTTTGTGGTCGCCCGGGAGTGCTCCCAGTGCAACGCCTTCCAATCTAAGTCGTGGGCAGCGTGCACACAAACTGGGTATGTGGAGATGATCAACTGTGCCAAGTCCAACAAAGACGAGTACAAGAGCTGCCGCTCGGCCCTGATGGAGGAGAGCCGCTTCTGGAGGTTCGAGGGCACCGTGGTGGGCCTGACCGTGGTCTTCGCCCTGCTGGTGGTGATGCGCCAGCGCGCCCTGGACCGGCTGGCCTCGGAGAAGGTCCGCAAGCAGATTGAGTCCATCTAGAGGCCCGGGTGGGGGGGGCGCTGGCAAAACGATGGCCAGTCCAGCCGACCGGCCCTAGGACCACGACAACCTGGGGAAAAACTACACAAAACGGTGTTTTATAATGATGTTTTAATAATCTAGGAGGGTCTCCTGCCCCCTAGTGGTGGAGACGAGAAACTGCTCACCACCTGGCTCTTTTTGAAACTTGGAAAAGATGTGTGGACAAGATGGCGACGTTAGGAAGGCCTGCTTTAACACGTGGAGAGAGCGCAGTTTGGGGAaggaagcaaggaaccaggcCTGCTTAGTCAGAGGACTAATCCTGGACAACAACAAGACACTGACTTTAGtcctgtgttttttgtgtgctttttttaaatgcatcttacaGTTTGGATTGACTGAGATCACAAGAGCTCTTTTGAACGGGGCCGGTGGCAAGAACTCGCCTTTCCCAGTTCGAGGGACAGGTGTGGCGGTGGTAGTGTTACAGAGGGAGCCCAGAGGCTCATGGGAATCGGAATGATGACACTGCATTGAGGAGCAGGTTTAGTTTTACATATTTGGAATCCCTTTTTAAGACCTTCAGGATGTACGGATGAAATGTTATGGTGCCAGTCTTGAGCCGGCCTGGGTCTTTGTATGGCTGTAGCCCTCCAGGTGTTTGTTTGCCACATTAtgcaaaggagagagagattgtgggagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgattcagtGTGATTTCTCCTCTGATCTGAGCCAATTCTTAAAGCAcaccttcccccccccctccatggTACACGCTCCACAGGGGAGTTCTGAGCTCCTACAGGACACTGACGCGCCTCCACAGCTGtgtttatgttgtatttgtgtCAGTTTGTATTTACGTTTGAACGAAGGCCGTCATGTCTGAGTCTCCCTCCCATTCTCCGAGTGGGTgtgctgagtgtgtgtggggggttatTTACTGTGGGACGGCACCCTCGGACCCCGTTTCTTTCAGTTACTGTGCAACCGGCCATCGCCTGGGTCGGTCGACGCCGTGGAGAGGGTGCCAGGGTCAGAGGGGCTTTAATGACTTTCCCAGTTTAAAGACTTTCGGTCTTTGCCTTCATCTGTATTTTGCCTCTCATCTCTTAAAAagtgttggggtgggggggacggACTATATTCTGTCGGGACTGTATTTATTGGGATTTGTTcaatctgttttgtgttgtttctcatcaaaacaaatgaggaaatgggaaaataatgGTCTACAAATGCAGGATTTAGTCACTACTTTGGAAATAATGTATACTTAGGGTATTTctctaaataataatgatgaatacACTTGCACATGGTTGTAATATGCAGTCAGGACATCCCAGAAAATTGCTTAGACGTCTTTATCCTGCTATTTATCcccaatattattattgattttcattaatatttgtttattttaacttgtaCAGTtggtgcaatttttttttattattaatattcctccctctcgctctcatttgtccagatgttttattttattttttgcacattgtCCAACGTATGGTTTCAGAACAGATCCTTTGAGTTATTGGTGGGAAAAACAAACCCAGGTTTTCTAGTATTTAAGTCACCgcattgtaatattttgcaCCAAACtaagattgtgtttttttgttttttaatcacaattgacattttttaatgtcaaatcTTCCATTTGGAGGCAGAAGTCTTTAAAACCTTAGACTGCCAGCTGTTCGGTTAAATCACTGTTGATCTGAGCAGTTTTGAACGctaagtgtttttttccccatcccCAATGACTCTGTTAATAGTATACTGTAAATAACGTATTTTTATGAGAGATGTGAAGCATTTGTTGATATGAGCTGCCGGTCACCGGGAAGTGAACAAATAAATTCTGCATGGATCAATCTCACAGATTTTCCCTACAGTGTGTAACTGTCGGAGTATATATCTGAGGGTAGTGGGAGGAGAGAGATGTGTAAATTagacaataaaaacacttgctcgaaaatattgactttattaaaacatttacagtttgcAGCATTGGAGTCGAGGTTCAGCGAGGCTACAGGGTTCAGACTGATGGCTGAGATAAGCATGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012431 True 2798 mRNA 0.48 6 18174010 18179817

Neighbor

gene id symbol gene type direction distance location
AMCG00012432 NA coding upstream 4266 18162576 ~ 18169744 (+)
AMCG00012429 NA coding upstream 167236 18002639 ~ 18006774 (+)
AMCG00012428 NA coding upstream 232448 17937937 ~ 17941562 (+)
AMCG00012418 NA coding upstream 359446 17806559 ~ 17814564 (+)
AMCG00012411 NA coding upstream 422555 17730997 ~ 17751455 (+)
AMCG00012440 anp32e,LOC100707939,LOC102193634,LOC102789185 coding downstream 49928 18229745 ~ 18237188 (+)
AMCG00012447 NA coding downstream 150107 18329924 ~ 18350901 (+)
AMCG00012446 NA coding downstream 173194 18353011 ~ 18375993 (+)
AMCG00012454 selenbp1,LOC107588475,LOC107556087 coding downstream 210014 18389831 ~ 18401677 (+)
AMCG00012451 LOC101076171,LOC102795628 coding downstream 222488 18402305 ~ 18414912 (+)
G136718 NA non-coding upstream 272354 17900908 ~ 17901656 (+)
G136571 NA non-coding upstream 509840 17663433 ~ 17664170 (+)
G136568 NA non-coding upstream 524903 17648628 ~ 17649107 (+)
G136564 NA non-coding upstream 538049 17623113 ~ 17635961 (+)
G136539 NA non-coding upstream 684466 17489319 ~ 17489544 (+)
G136842 NA non-coding downstream 82080 18261897 ~ 18269507 (+)
G136848 NA non-coding downstream 115398 18295215 ~ 18317076 (+)
G136866 NA non-coding downstream 253753 18433570 ~ 18470784 (+)
G136873 NA non-coding downstream 293416 18473233 ~ 18474916 (+)
G136969 NA non-coding downstream 436081 18615898 ~ 18653598 (+)
AMCG00012439 NA other upstream 39629 18130284 ~ 18134381 (+)
G136720 cct3,tcpg,LOC107597996,LOC107587818,LOC107741740,LOC107671634,LOC107704884 other upstream 270200 17902832 ~ 17903810 (+)
G136658 NA other upstream 330089 17840933 ~ 17843921 (+)
AMCG00012423 LOC102799202,LOC107564869 other upstream 378766 17792251 ~ 17795244 (+)
G136641 NA other upstream 406479 17764145 ~ 17767531 (+)
G136864 psmb4 other downstream 205472 18385289 ~ 18388306 (+)
AMCG00012460 NA other downstream 359728 18539545 ~ 18544490 (+)
AMCG00012471 NA other downstream 867680 19047497 ~ 19053829 (+)
G137083 NA other downstream 989931 19169748 ~ 19174421 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other downstream 1057872 19237689 ~ 19238958 (+)

Expression


Co-expression Network