AMCG00012437 (LOC106580258)


Basic Information

Item Value
gene id AMCG00012437
gene name LOC106580258
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18098177 ~ 18102329 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012437
ATGCCCCGGAGAAAGAGGGCGGCCGCCCTGGACGAGGAGGGGCAGCAGCGGGCGGGCCGGCCCGTGGAGCCAGTGACGGAGCTGGCGGTGATCGCCCGGGGGCTGGGCGAGGAGGTGCCCGAGGGCTTCACCTGCATTGAGCGCACGCAGAGCGGGCTCCCGGCCGAGCTCAGCGCCGGCCTCATTAACAACCCACACATGTACCTCTGCTACAAGAGGGGCCACGACAAGCCGCCCATCCTGGACCTGGGGGTGCTGTACGAGGGCAAGGAGCCGGTGAAGCCCGGATGGCACGTCATCGAGACCACGCCCTACAGCCGCTCGGCCAGCCTGAGCTCGGGGGGCGCGCCGGGCACCCACCGCACCTTCCTCACCTACCGGCGGGCGCCCGACTCGCAGGCCCTCAACACGCTGGGCGTCACCGACATCTCCGTCCTGCTGCCCAGCAAGGGGGAGAGCGCCCCGCACACCTTCTGCAAAGTGGACAAGAACCTCAACACCGGCATGAGAGCCGTGGCGAAGGCAAACGCGCTCGTCTACGAGGCGGGGCTGCTGAGCCGCTACCCGGAGGCTGACGCCGAGTCCTTCCCCCTGCCCGAGTCCGTGCCCATCTTCTGCCTGCCCATGGGCGTCACCGTCGAGAGCTGGCCCCTCAACACCAAGTACCAGCTGCCCGTCTTCTCCACCTTCGTCCTCACCAGCGCCTGCGGGGACAAGgtGTACGGCGGCGCCATCCAGTTCTACGAGGCGTTCCCGCGCGAGTGCCTGACGGAGAAGCAGTGCCTGCGGCTGGGCCTGGTGAGCGTGGTGGACCGGCGGCCCATCGGCACGCGCACGGTGCAGGTGAAGAAGAGCGTCTGCGTGCTCTCACACTGGCCCTTCTTCGACGTCTTCCAGAAGTTCCTCACCTTCGTCTACCGCTACTCCATCTCCGGGCCCCACGTCCTGCCCCTGGAGAAGTGA
>TU171956
NNNNTGGTGGCGGGGCTGACTGGCAGGGCGGCCGCCCTGGACGAGGAGGGGCAGCAGCGGGCGGGCCGGCCCGTGGAGCCAGTGACGGAGCTGGCGGTGATCGCCCGGGGGCTGGGCGAGGAGGTGCCCGAGGGCTTCACCTGCATTGAGCGCACGCAGAGCGGGCTCCCGGCCGAGCTCAGCGCCGGCCTCATTAACAACCCACACATGTACCTCTGCTACAAGAGGGGCCACGACAAGCCGCCCATCCTGGACCTGGGGGTGCTGTACGAGGGCAAGGAGCCGGTGAAGCCCGGATGGCACGTCATCGAGACCACGCCCTACAGCCGCTCGGCCAGCCTGAGCTCGGGGGGCGCGCCGGGCACCCACCGCACCTTCCTCACCTACCGGCGGGCGCCCGACTCGCAGGCCCTCAACACGCTGGGCGTCACCGACATCTCCGTCCTGCTGCCCAGCAAGGGGGAGAGCGCCCCGCACACCTTCTGCAAAGTGGACAAGAACCTCAACACCGGCATGTGGGGGCCGGCCTTGTACCTGTGCTACAAGAGAGCCGTGGCGAAGGCAAACGCGCTCGTCTACGAGGCGGGGCTGCTGAGCCGCTACCCGGAGGCTGACGCCGAGTCCTTCCCCCTGCCCGAGTCCGTGCCCATCTTCTGCCTGCCCATGGGCGTCACCGTCGAGAGCTGGCCCCTCAACACCAAGTACCAGCTGCCCGTCTTCTCCACCTTCGTCCTCACCAGCGCCTGCGGGGACAAGgtGTACGGCGGCGCCATCCAGTTCTACGAGGCGTTCCCGCGCGAGTGCCTGACGGAGAAGCAGTGCCTGCGGCTGGGCCTGGTGAGCGTGGTGGACCGGCGGCCCATCGGCACGCGCACGGTGCAGGTGAAGAAGAGCGTCTGCGTGCTCTCACACTGGCCCTTCTTCGACGTCTTCCAGAAGTTCCTCACCTTCGTCTACCGCTACTCCATCTCCGGGCCCCACGTCCTGCCCCTGGAGAAG

Function

NR:

description
PREDICTED: DENN domain-containing protein 4B-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012437 False 963 mRNA 0.68 6 18098177 18102329
TU171956 True 999 TUCP 0.68 5 18098180 18100627

Neighbor

gene id symbol gene type direction distance location
AMCG00012436 NA coding downstream 7929 18073391 ~ 18090248 (-)
AMCG00012430 NA coding downstream 45156 18036680 ~ 18053021 (-)
AMCG00012426 NA coding downstream 117413 17964421 ~ 17980764 (-)
AMCG00012424 NA coding downstream 168906 17919131 ~ 17929271 (-)
AMCG00012427 NA coding downstream 179752 17910404 ~ 17918425 (-)
AMCG00012435 NA coding upstream 15643 18117972 ~ 18130574 (-)
AMCG00012438 crtc2,LOC105019155,LOC106605456 coding upstream 35178 18137507 ~ 18144411 (-)
AMCG00012433 NA coding upstream 43214 18145543 ~ 18150926 (-)
AMCG00012434 NA coding upstream 51213 18153542 ~ 18155254 (-)
AMCG00012442 NA coding upstream 78125 18180454 ~ 18182515 (-)
G136746 NA non-coding downstream 126324 17912238 ~ 17971853 (-)
G136750 NA non-coding downstream 134933 17941472 ~ 17963244 (-)
G136623 NA non-coding downstream 413994 17682207 ~ 17684183 (-)
G136616 NA non-coding downstream 434007 17663455 ~ 17664170 (-)
G136607 NA non-coding downstream 454419 17643511 ~ 17643758 (-)
G136820 NA non-coding upstream 10347 18112676 ~ 18112903 (-)
G136826 NA non-coding upstream 38422 18140751 ~ 18179687 (-)
G136915 NA non-coding upstream 317680 18420009 ~ 18493905 (-)
G136906 NA non-coding upstream 337250 18439579 ~ 18442587 (-)
G136951 NA non-coding upstream 442589 18544918 ~ 18546313 (-)
AMCG00012414 NA other downstream 319055 17767410 ~ 17779122 (-)
AMCG00012416 NA other downstream 333616 17757334 ~ 17764561 (-)
G136666 NA other downstream 374109 17720726 ~ 17724068 (-)
G136625 NA other downstream 409665 17686332 ~ 17688512 (-)
G136544 NA other downstream 594191 17503618 ~ 17503986 (-)
G136837 NA other upstream 103046 18205375 ~ 18237256 (-)
G136900 NA other upstream 273001 18375330 ~ 18378297 (-)
AMCG00012459 cdc42se1,LOC106569912,LOC106588345,LOC102790437 other upstream 414507 18516836 ~ 18537125 (-)
AMCG00012467 NA other upstream 825050 18927379 ~ 18933201 (-)
AMCG00012472 ensa,LOC102787866,LOC100695493,LOC101487776,LOC102291346,LOC102199757,LOC108243249,LOC103369031 other upstream 930274 19032603 ~ 19043449 (-)

Expression


Co-expression Network