AMCG00012441


Basic Information

Item Value
gene id AMCG00012441
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18261865 ~ 18277604 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012441
ATGCCTGGCTTCCTCCCCTACACGGGCCAGCTCGCCCAAACGTGTCGGTACGACACAAAGAACATCTGCAATCTCCGAGAGCCTGTTGTTGACGTCACAGAGGCCGCCCGTGTCATTTCCTGTTTGTCGAGGGTTCCCGGTAAACTGGCCCGTCTAATCCCGTCTCCCATTAATTACGGCACGAGCTCCTCCTCTTTTGGTGTTTGGAGGCCTTGGCGCCAGAGACTAACGGGAGCTTCTGAACTAACCCTGGTATTTGTTTCTCAGGTGAAGGACGAGAAGAAGATGCAGGAAGTGTTCGACCTGTCGGACTACGAGAAATCGGAGGAGCTGCGCAAGTCCAAGAGCCGCAGCAAGAAGAACCACAGCAAGTTCACCCTGCTGAGGTCCCGGCAGCCTGGGAACACGGTCCCTAATCTGGTGTTCTTGGCAGTCAGTCCCGAGGAGAAGGAGTCGTGGATCAATGCTTTGAACGGAGCGATAACGAGAGCCAAGAACCGCATCCTCGACGAGGTCACAGTAGAGGAAGAGAGCTTCCTGGCCCACCCCACCCGGGACCGCGCCAAGATCCCGCACAACCGCCGGCTGCCCACGCGCGGACACCTCATGGCTGTGGCATCCACCTCCACCTCGGACGGCATGCTGACCCTCGACCTCATCCAGGAGGAGGATGCCTCGTCGCCGGAGCCGCAGGCCGCGTGTGAGAAGGGCTACCGGGTGGACCTGGACAAACCGGCGCCCCCAAGCAGCAGCTCCAAGCCCCCCGGGCCGGGCGGGGCAGGCGAGGGCAAGTCAGAGAGCCTGCCCCGCAAGAGCGAGATCAGCTGGGAGCGGACGGGCGAGGCCCAGGGCGCCCGCACGCCGCAGGTGGCCAAGAGACTGTGCCCGGCCGAGAAGAGCCGCTGCGCCTCGCTGGAGGAGATCCTGTCTGGCTCGGAGTCCCGTGCCAAGTGGGCCTGTCCTGCCTCACCGGCCACCACGCCGCCCCTCCACCAGCTGCAGGACCTGATCGCCCAGAGACTGGAGAGGACTCAGGAGCTGCTGGCCGAGGTCAAGGGCCGCGAGCGCAAGGGCAAGGACTCGCCGCCTGCCAAGGGCAAGGACTCAGGGGGCAGCCGGGCCGAGGCGGAGCGGCTGCTGCAGGAGGCGGCCTCCACCTGGGGCCAGGCCCGGGAGGTACTGGAGGAGGTGAAAGAACTGCGGGCGCTGTACCAGCAGATGGACCTGAGCCCCTCCGCACCCCTGTCGCCCTCGCAGGGCAAGCTAAAGAGCCCCCAGCAGACTCACCACCGGAAAAGCATGATGTGAGGCCCGGGGGAGGGACAGAATTACGTCAGAACCGGAAATAATTGACAAACATATTGCAGTGACAATACTGTCAGGGAGGGTGGCACCATTTCCTCCTTCGCCCCCTGCCACCCATCCCTTCTCTGCTATGATGAGGCGTGCAAAGTAAAGCTCCCTCCTCCTCTAATCCCTGCTTCCCGATcgctacactgtactgtactctacaGCGTCTCCCGGGCAGCTTCAGCCGGATCAGAATGTCTTTTTTCCCCGTTTGTGTTTTCGGAAGGCAGAGTAGGGATTCCGCCCGCTGAGGGTTCCAGAGGGTTCTAGATTGGTTGGGGCTAGCGTTGGGTTTCATGTGGCGTTCAAATCTCAGTCGAATGCGCCTTCTGGCACCGGAGCACGCAGTGTTTCCCTCAGCCCGGAGTTAGAAACCTAAATAAATCTGAGCCACGTGACccctgaaaagaaaatcagatttCTGCCACCGAATTTGATGACGCTTCTTTTAGAACCATTTAAGCTTTGCTTGGGTCAATAGAACGCGGTTTGCGAATCAACAACCATTGGGTTCCCGACTGTAAAGCAGACAGTGACCTTATGAAACTAGACTCCTTCCCCCTCTGCCTCCTTCGAGTAAATCCTCTGATACTGCGATGCCAGAACGTGCAATTATAAGGCAAACCAGTCTGTCATGTTcccattcatttgtatttatgtggAAATCAGACACGCCGTACAATCTAGACACACTCACAAACGGTAcgtttatcttttttttaaattatttgtattattttatactgaaaCCGCACGAAAGCTGGGTACAGTCGGAGATTTCAAGCAGTACGTCCGTATGGATTAAACCACTTCTTTGGGAGGGCGGGATTTCAGAGTCGGGGGCTTGGACCGTGTCGTAGCACTTTTGGAGAACGCTCTAGAACTAGACCTCGACACCACCCCGCTTGCTGAATCTAGTACCGTTTCCAACAAAGATCTTCTGTCTCTCGTGGTGTTACGGAACCGAGCGTCCCCCGGAAAAGGGCACCGACCGGCGAGGCGAGCACGTATGGCGTACGTGAGGCCCGCAACCTTGTGCCCCCGGTACAGAACTACTGTAATCTTTACCTGCACATGCCAAAAAATTGTAAGcgtacaaaaaacaacaacaagggCTAGACGATCAACGCGGAGCGATACGCTATTTCTCGCCTGCACATCTTCTCTCATTTTCCTGTCCGTAGTCATGATTTTGCACTAAACCGGCGGGGGGGACCTCGGATTGCGCTGGTTTTGTCTCTCCGCATTTACGAAAGCagtgttattattgtgttattgttttttattattattatttttactgttggTTCAAATTGTTGGCCCTTTTGGGAGCGCACGGGAACCTGTTTTGGAACAAAGTCACGGGGAACGGAGAGGAAGGATGCAGACGTCACGTGAATCGCAGAGTTTTAGCACAAGAGTACGACAAACAAAGTGACGACAACAGACTGTGGTAGCTGTGAACTGTTTCgatcttcatttttttgtttttcttaagggAAATCCTTTGTTATCcacttatttttatgttttttggtttttttttttgttggcagTCATGGAAAATGACACTGAAGTCTGACTGGATCACAGTGTTGGTCTTCAGAGGGGTCAGATTCTCCCTCTTACAGTATGTCACTGTAACACAGTCGACACATAAGGTACGACTCCATTAAACTTGGAATTCCTAAAGCCTCCAGGCGGGTTAATTTGGAGGTTATTAACCAGAGCCAACACTGACAGACCGGGTCATTACATGAGCGTGATCTCACACTTAATTGTCAAGAAGTCATCAGGGAAATTAGCGAGTAGAATTCCCGTGGGCTTGTTACTATTGTCAAACACAGTGTTGCAAACTCTAAGgaatatacatttgattaatatttcCCGAGGGTGGGCTGTTCCCCTCCCCCACACCTCTCCACGTATCAGGTCATTTTACTTCCTCGCTGCTTCCTTCCATTGCACTTAAAGGTTTCCCGTAATGAGTTTTGGAGGCTGTCAGTTGCACATTCAAACAGTTGTACCAGAAAACTGCATTGATGAGAGAGTGAATAAAATATGCACAGCATCtggactgaaaacaaatgtttctaaATAGGTACCACTGTTAAAAAAACCAACCTCATCCACACAGATACGTAAGTAGGCCATAATACGTTTACTTTACTCGTAGTATGTCTCTGGTCTGGCCTTAAGCAGCCCCCTTTGGAACAAAAGCTGTGGCAATCTTGAGACtgatttcaattatttgttttctgcttttgaaaatgacacTTTGTTATCGTGGTTTTTTTTAtctgattataataattattgtattgtaatgatcatttttatttgtttttctaacatTTGGGCTGCTTGAATGACCCGCAGTCTTTGTGAATGTGAGAGCTTCCCTGGCAATCTCGTGCCAGAAGGGATTATGTTTTCAAATTGCATTCAGAGACCCCCGCGGTCTCCATCCCTTGGTCCCGATGTGATCACGTATCATTTCAGTGTAGCTCTCTGAATGGGGTAGTGCCGACAGTTATGCCAAAGATGAGGGGCAGTACCGATTTATATTTAGTAAATGTAACGCACTGTCTGGATGTTACTCATCTTGCACTGATTGCATCAGGGCGTTCCCATCCTCACCTCATTGGAATCCCAGCATCCTCTGCTTCCCACTGCTGCCCAGCGCTCGGCTTTTACATCATTAGCatcttaattgaagtcaatcaGTACCAATTAGTCATGGGTAAGATTGGGAAACCCTGGCTTATGATCACAGCGCCTTCAGCCAAAATCCTCTTCTCAGGGCTAAACCCACTCAAGTCACGGCCCTTGCTTCGTATAGAGACAGACTCTCGTTACGTTTCATGGCAATCACTAAATGGAAAACACCCCTTTTAACTAAAAAGAAGTACTGTTATTTCAAAATTATCTATTTCGAAGTTTTTAACGGTGCGTTTCCATGTCCGCTTCCGTGATGGGATTTGCCAAGGCCTATAAACCCCTCAACTGAATCCTTGCGCTCAAAAACTGGCAAAAGGAGTTGTATTTGCCAGGAGCTGCATTTCCGAAAAAGTCCCTGCCCGTCTGCAGCTTGGTCCTTCGGAGAAATGTTTTGGCTGAGGGTTTcggagttatttatttttttcttccatttttctttccaaCAAGTCTTCCTTTTAGAATCTGTTGAGTtatcttcattttgtattactttgctTTGAACACAGTTGTCAAGTGCGTGACCTCACTCACGCAGTGTTTGTCTCAAGACGTAACTTAAAGCCTTAAAAGAGCTTGGGTTTCAGACCGGGCCGTTCGGAACCTCTTTGAGGAACACAAAGGCACCAGTTACCGACGGCCGTTCTGGCATGTCGAAACGAGGTACGGGATCCGAGTTGGTGCTTTACCCCATGCCGGGTAAAAGGAGAAAAGCGTTTCATCCAACCTGAAGCGGGTCTGGGTCGGGTGCTGCACCCGCTTCTCGAAATGAATTGGTCACATGGTTGATTTATGCTGATTTAGAATTTAATGTGAATAAAAGTGCTGTGAAAAGACACCCCCCCGTTGACTTTCATTCAGTGATTCGACAAACTAGAAAGCATGTGTTTTGTTGACACACGAGGTGGTTTGTGATTTGATTTACTCCGTCTGGAAGCTTTgtaagtgtatatatttgcaaaCAATTCACACATTTGTTGAAGTCTTGCTACCCACACAGAACAACCATATATTGCCTTGGTTGATAAAGGTGCTGGAAGTGACTTCACTCCACAGTATTTTCACGGCTGATTGTATGCACTGCGTTTTGATTCTGTCGAGTGGATCAACGCCCTGATTTCCGCCTAAAACAAATGTCGGCAACTGTCTGTTCCTGGAGTTGGTCACTGACCAGCTCCCAAAGCACCCTAGGAATGTATAAGGTGTCAGTGAATGTCCAAACCATTAGGGAGAACAACATCATTACTCCAGACATACATGACCTTGTGTCCAAGACGTTACGcacatttgacttttttttttaaggatggcCCGAATGAGCAACCGTAGAAAATCGGTTTCAGCATCAGATTTTTCTAGAAACATGACGGAAAAGACTTGACTTTGAGATTGTCAGATAACCTTGTCCACCCTTTGGCCATCTCCACCCTAAGaagaagtataaaataaatagatgttcTTCACGCTGTAACACTGAGCCTCGGGCAGAGTCGTCGCTTTGAGGGTGTTTTTCAAACTGAAATTCTCTTACCAAGAGCCTCTCTCGAtcagtgaatgtccttgagcaTCCTTGCTGCACCCCGTGTTTGCCGTTAAGTATTTGGGCAGAGAAGAGTGATAATCCTGAACTACTCATCTCTGAATTTGGTATTCCCGCCTGGCACCTCAGGATCTGGCGTTTGATGATTGAAATTCAAGCTGTGGGTTGTTCAAAGTGATACCCATCCCCCATCCACACGATCTGACAGCACAGAAATCAAAGACTGGATATTCAGGGTCGATTGCTCCATTACaggatcaaattaaattaaaaacaaatctacttCGATTAAGTATTTGGTAAATTCCATTACTGGAGACAAGACAAGTGAGTTGAAAGCACTTCATGACCAAAAGAGAAGCGGGGGATGCTTTTAAGGTCGTCTTTAAAGGGCACCTGTAGTTAATATGATCAAAGGGTTAAAATTGCAATGGCCAGTGTCGATTCCAGTCTTGATATTGGTATTTTTCCCTCTCTGGGTGTCGTTTTGCTACATAGTCAACCGCTTTTATTCGTGCTTTTGCCTCGTCGAATTTTGACAGTTTCCCTGAGGAATTCTGCCCAGATGCACTTGAGGGATATCTGTACGAACCACTGATTAGATTAGTCCCATTTAGTCAAGAATTATCCTGACGGAGAAGTCGCCGGAACAAAAGCTCCTAGTCTCCTAGACTGTACGGCACCACAATCTTTGACACGAGCGCGTATCCGCCAGAATATTGTCACACCCGAGTGTAACACGACTCGATTTTTTCCGCAGACGGGGAGGCAGTATCGCCTAATGCCTGACCTCATACTCATGACTGTCTCATTGAAGACACTTAGTGCATTGAGAGTCACTGGCAGTGCGGGATTGATCATTTTACCCCTGTGGTTCATTTCGACTACTGGTGTGCTTTAAAACACACGGGGAATATTTTGTGGACGCGATCGGGATCTGCTTTTCAGACCCTGCAGAATCTCTCACTCCAGATGTCGCCGTTCGGCTCGGTATATGAGCAGTAAAGTAACTAATCCCACATGGTTCGTGTGCGAGCTTCTGCAGGATGTCCCATTatcttgggaaaaaaaaagcctgcaTATATACgcgaataaataaaataatccaggTTTATAGACGACTAGGCTGTGATTTGTGGGTTTCAGGGAGGTTATCGTACTCTAGAAATAACCTGTGGCTGCTTTTATGCATGTGCATCCCAACGGCATTGCTTTCGAGCTGATGCTAACTGGCTTAGGGCTGGTGTCCCGGCTCAAATCCCTGGCTGTCTGACACGCACCGGCTCTGAAGAGAGATACCGTTCGACGTCTACTTTCGCTGCATCCCGAAGCACTGTGATCTTCTTACCTAGCCGGGACGAATTAAACTTTAATCGCAATCTATTAATATcttgttgcaaaataaaatggttatttttttatctgcacATTTGTTTCCTGGCTTAATAATAGCCACACTTTTACAGAGGTGCCAGTCACCCTTTGAAGTCGACCAGACTAAACCTTAACCCAACCAGCCGCGCCGACCTTTTCTTTCCCAGCTGAACGTCGGCTGCTGGCAGATCGCATTTCTTAGGAAGACCGAGATCTGAGCTGATATTTTAAAGCTGCGATTCGTTCTGTTAGGGGGTCCAGAAATTGGGCAAGACGCCTACAGAAATATCCCGAGCTAAAGCAGATCAACGTGCTTGATTTACCGGCACAAAGCCAGAACAAAAAGCAACAAGATCCAAACAAGGGAGTCTGGGGATGTGGTAGTTACAGTTTTATGACGTATTATGCAACCAGTGTTGGCTTTCAAAGCTTCAAAGATGTATATGTGTCTCACCAGTCTTCCCTCTTGATAAGAtagttgtctctctctcccacctgcTTTGAAGACCTGGAGTAAATCAAAAGATTGCAACCCACCAATTTGGAAAAGACGCAGGTCagaaacccaaacaaacaacaaaaaagtaccGACTCGCCTAAATACTTAAAAGCTGGCCCCAGGTCTTTACTTAGCTGAAACGTTTTAAGACGTATCGAGTAAGTGGTGTGTGTTTCTTCCAAGTCTTAactgttgttgtctttttggtTCGAGTGGCTCTCTTTGCGGCCGTTGCGTGGCTGTGTGTCGTCAGCGTGTCTTTTGTCGTCCTGCAGCTTGCAAAGGGATATACGGATTAAATTTGGTCAGCCAGTCACTACCGTAAAACCCTGGCGACAGTGGGTGTCCgtgcaagtttaaaaaaaaagtctgtgtgATGTTTTGCATAACTTGATTGTTCATGGCGGGTGtggggggttaaaaaaaaaaaaattgaaaagacgAAATGCAAATAAACCTTCCTGTCTGCTGGTGTGTGATGAAAAGACTCCGTTTAGTGTTGTTCGATCTGCTGTGCTGCTTTTTCAGAGCATGCAAAGGAGAAACCAtggtttacagtatttttagCACGGATTTTCCTTTCATGTACGCGAAGATGAACAAGGCAAAACGAAATAAAGAATTAATTTATACAAGCTC

Function

GO: NA

KEGG:

id description
K24022 PLEKHO; pleckstrin homology domain-containing family O

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012441 True 8120 mRNA 0.48 5 18261865 18277604

Neighbor

gene id symbol gene type direction distance location
AMCG00012443 NA coding downstream 10859 18240923 ~ 18251006 (-)
AMCG00012444 NA coding downstream 54382 18195065 ~ 18207483 (-)
AMCG00012445 NA coding downstream 75070 18185723 ~ 18186795 (-)
AMCG00012442 NA coding downstream 79350 18180454 ~ 18182515 (-)
AMCG00012434 NA coding downstream 106611 18153542 ~ 18155254 (-)
AMCG00012448 vps45,LOC106588336 coding upstream 17611 18295215 ~ 18320973 (-)
AMCG00012449 NA coding upstream 45401 18323005 ~ 18326883 (-)
AMCG00012450 psmb4 coding upstream 106074 18383678 ~ 18388229 (-)
AMCG00012455 fam63a coding upstream 192391 18469995 ~ 18476148 (-)
AMCG00012461 NA coding upstream 291245 18568849 ~ 18569085 (-)
G136826 NA non-coding downstream 82178 18140751 ~ 18179687 (-)
G136820 NA non-coding downstream 148962 18112676 ~ 18112903 (-)
G136746 NA non-coding downstream 290012 17912238 ~ 17971853 (-)
G136750 NA non-coding downstream 298621 17941472 ~ 17963244 (-)
G136623 NA non-coding downstream 577682 17682207 ~ 17684183 (-)
G136915 NA non-coding upstream 142405 18420009 ~ 18493905 (-)
G136906 NA non-coding upstream 161975 18439579 ~ 18442587 (-)
G136951 NA non-coding upstream 267314 18544918 ~ 18546313 (-)
G136955 NA non-coding upstream 275403 18553007 ~ 18556113 (-)
G136968 NA non-coding upstream 336435 18614039 ~ 18614257 (-)
G136837 NA other downstream 24609 18205375 ~ 18237256 (-)
AMCG00012437 LOC106580258 other downstream 159536 18098177 ~ 18102329 (-)
AMCG00012414 NA other downstream 482743 17767410 ~ 17779122 (-)
AMCG00012416 NA other downstream 497304 17757334 ~ 17764561 (-)
G136666 NA other downstream 537797 17720726 ~ 17724068 (-)
G136900 NA other upstream 97726 18375330 ~ 18378297 (-)
AMCG00012459 cdc42se1,LOC106569912,LOC106588345,LOC102790437 other upstream 239232 18516836 ~ 18537125 (-)
AMCG00012467 NA other upstream 649775 18927379 ~ 18933201 (-)
AMCG00012472 ensa,LOC102787866,LOC100695493,LOC101487776,LOC102291346,LOC102199757,LOC108243249,LOC103369031 other upstream 754999 19032603 ~ 19043449 (-)
G137199 NA other upstream 1164323 19441927 ~ 19507394 (-)

Expression


Co-expression Network