AMCG00012446


Basic Information

Item Value
gene id AMCG00012446
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18353011 ~ 18375993 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012446
ATGCAGGGGGACACAGTGGTGGAGGTACAGGAAATGGACAGTGAGAGAGTGAACGTGTGTAACCTGGTGGCGGTGAAGCGTGGCGAGCACAACCCCGAGGTGCAGAAGCTGGTGAACCTGGTGAACACGGTCAGCCCAAGTGCCGTGGCCCAGCCGCCCACCCTGCAGGTTGTTATGACCAACAACAAGGCCCCTGGCAACGGCCTCCCCACCGCCACCACGACCAGCAGCGGCGCAGCCGTCTCCTCCCTGCCCCTCAACAGCATCCAAGTGGGTCCCGCCACGTCTGTGCCGTCCTCCAAGATGTGCCCGCGCTGTGGTGCCCAGTTCAGACTGGTGGAGGCGCTGAGGGGGCATATCCTGAAAGCCAGCGAGGGGCAGAAGGCCGCCAACAACTCTTCTGCCAACACGGTCTCCCGCCCTGCCGCCCCCCCAGCCTTGGCCCAGGCCGCACCCCCGCAGACCCCCCCGACCCCCCAGCCTAAGCCGCTGCCCAGCGCCTCTGCCCCCCCGTCCGCCACGCCCCCCGCGGACAGCCAGAGCGGCAGCATCGACTCACAGGGCAAACTCATCATGCTGGTGGACGACTTCTACTACGGCAGCGACGAGGGCCGGCTGACGCACAGCTTGGTGGACAGCAAGGAGCCCGTCCCCTTCAAGTGTCTCAACTGCTCCAAGAAGCTCAAGAACAACATCCGGTTTATGAACCACATGAAGCACCACGTGGAGCTGGACCAGCAGAACGGCGAGGTGGACACCCACACCATCTGCCAGCACTGCTACCGCCAGTTCCCCACGCCCTTCCAGCTGCAGTGCCACCTGGAGAGCGTGCACAGCCACTACGAGTCCACAACCAAGTGTAAGATCTGCGAATGGGCTTTTGAGAGCGAGCCCGTGTTCCTGCAGCACATGAAGAACACGCACAAACCCGGGGAGATGCCCTACGTGTGCCAGGTGTGTGAATTCCGTTCATCCTACTATTCGGACGTGGACGCCCACTTCCGCGTCCAGCACGAGGACACCAAGCACCTGCTCTGCCTGTACTGCCTGAAGGTCTTTAAGAACGGCACCGCCTTTCAGCAGCACTTCTTCAGACACCAGAAGAAGAGCGTCTATCACTGCAACAAGTGTCGGCTGCAGTTCCTCTTCACCAAGGACAAGATCGAGCATAAGCTGCACCATCACAAGACCTACCGCAAGCCCCGGCAGCTCGAGGGCCTGAAGCCAGGGACCAAGGTGACTATCCGGGCGTACGCGGTGCAGAGCAAGGCGGTGGGGATGTCCGTGGTGCCCCCACTCCCGCTGCTGCCCCAGCCCGCCGAGGGGAAGAGCCTGCCCGCCAAACCGGCCGAGCCCCCGTTTGCGCCGCCCGCCGCCCAGAGGCCTGCCGTCAAGAAGAGGTCCGTCAGTAAGATGCTGGAGCTGCTGAGCAAGTTTCAGGAGAAACGGTCCACGCTGGGCAGGCAGACCTGCCTGGAGTGCAGCTTCGACATCCCGGACTTCCCCAACCACTTCCCCACCTACGTGCACTGCTCCCTTAACCATGTGCCGCGCAAGAGCCCCAAGTACCTGGCCCTGTACAAGAAACCAGCCCCCAGCTGGCTGACGCTGGCCTGCACAACATGCTCCTTCACCACCAAAGTGGGGGATGTCATGGCCAAGCACCTGGACCAGAACCCCAACCATGGCTCCAGCCTCTGCTCAGAGTATCCACAGTTCAGGAAGAGGATGCGTCACGGTCGTCTCCTGCTTTCCCACTCTCAGCCACGCACTCGTCCCTCTTTCAACCTGCACGGCACTTTGGCCACTGTCTTGGTGTTTCTCACTGGCTGGAGGAGGGGTGGAGgaggggtggtgGAAGAGGAGCCGGGAGGGGAGGAAGGAGGAAGTGGAGCCGGGGGCCCATGGACTGAACCGGCCTCCGCAGACCCGTGGGGGGAGCCCGGGCGGCCAGTTGGGGTCGTGGAGTTCACGGCGACCTCTGGGCCGCGGTACAACCTGGGCCGGTCCGCCGACGTCCGGGACTATTTCCGCCTGCTCTTCCCCGACTCCTTATTTGAGCTCATCGCCCGGGAGACCAACGCCGGCGTGTACAGGGAGCAGGGGCCCCGGCCGGACCCCGAGTGGGAGCCCACGGACAGCCACGAGATCGCCGCCTTCCTGGGCCTTAGTATCCTCATGGGCCTGCAAAGCCTCCCCAAGACGCACCTGTACTGGTCCGCCAAGCACTACGAGGGCAGCCAGGACTTCCTCCTCACCATGACCTCCGCCCGCTACCAGCAGCTCTCCAGCGTCCTGCGGGTGGGTGGCTGCAGCGGAGAGGGGCCCGGGCAGAGCGATCCCGAAGACCGTCTCCGTGCCATCCGACCCCTGCTGGACATGGTGGAGAGAGCCATGTGGGACGCCTACCTGCCCAACCAGTGCCTGACCATCGACCGGGCCCTGACCCCCAGCCTGGATAGCGACGGTGCCCGGGAGAAGGGTCGGGGCAAGGGGCGGCCCCGGGTGTGGCTGCTGTGCGACTCCAAGTCGGGCTACTGCCACCGCGTGCTGATCCAGCCCCAAAGTGGCAAGAAGAAGGGGGCGGGGTGTGGCCGGGGTGTGGTGCTGCCCCTAGTGGAGGGTCTGCAGAGCAAGCACCACCAGATCTTCCTGGCGAGCTCTCTGGTCTCTGTACCACTGCTGCAAGAGCTGCTGGACCAGGGCATCTACGGCTGCGGCACAGTCCCGCTGGGCCTCCCCGGGGTGCCCGCCGACTTCTGGGAAGCAGGGGTGCTGGAGGAGCCGGGCAGTTTCCGGCAGTGCCAGCGCGGCAGCCTGCTGGCCACCCGCTGGAGGGACAGTAAGGAGATGTGTTGCCTGTCCACCAACGCCCAGCCGGGCCTGAGCGACACGGtgtggaggaaggggagggcgGTGGGTGGGCAGCTGTGCCCCGTGGCGCGGCCCCAGCCCTTCCAGCTGCACCAGGAGAACATGCGTGGCGTGGACATCTGCAACCAGCTGCTGGACTGTAACCCACTGGGCCAGGGAGGCGCCTACGACCGCTGGTGGCGCTCCTTCTTCTGGTTCTTCCTCAACCTCTGCGTGGTCAACTCCTTCATCGTGCTCCGCGAGAGCCGCAAGGACAGCCCCCCGGCCTGGCTGCCCAGCCGGCGCTTCTCTCAGGCGCAGTACCGCCAGCGCCTGGCCCGCCAGCTACTCCGGAGATCCTATGGGGAGCGGGGCGGCGCCGAGCCCGGCCACCGGATGACCAAGATCTCCTCCCGGCCCAAGCGCTGCCGCAACTGTGGGCGCAAGGGGCTGCGCCACGAGAGTGTGTTCGGCTGCGCGGCCTGCGACGCCAACCTGTGCAAGGGCCCTGCCTGCTTCAACGAGTACCACGGATACAGAGCGCCGGGCCAAGGGTCCCGAAAGGCTGAAATCCCCAGGCACCTCCCCCTGCCCAGCGTCTGGTTTCCCAACAGCCTCGGCAGCAGCAGCGTCCTTGGCCGCCTGCCACGCAGCGCCACCAAACTGCTTCCAAAGCCCctccccagccccagccccgcCCCCACCGTGGCCCCGGCCCTGAACGGGGGGCCGAGGGACGTGGAGATGGCCCCTGTGGAAGAGCCCGAGGAGCCACCAGCACCCGAAGCTCCGTCGGAGGAGGCAACGCCTGCCACGGCCAAGAAAGAAGAGACCCTGTCCTCAACACCCAAGACCAAGGGGCCCCTGGAGGACTCGGCAGCGGGGCCTTCGGAGCCGGAGAAGCCCGCGTCGGAGACCAAGGACCAGGAGGAGACGCTGTCTGTCCGGCAGCTGCGCATCGCGCTGTTTGCCCTGTGCTGCGGCGTCCCCCAGGCGGCCGAGCACTTCGGCAGTCCCCCCGAGCTCATTGAGGCCTGGCTGCGGGGCCTGGCGGAGAAGGAGCGGCAGAGGGGCACCGAGGGCCGCGGCGGTGCGGCGGTGGACCGGCTGGTGCAGTGGGTGCTGGTGCAGCGAGAGCAGCAGCTGCCCGTCAATGAGAAGAACCTCTTCCAGAAGGCTTCGGAGATCCACAGCAAGGCCAACCTCAGCGGCTCCTTCCGCATCTCCTACGAGTGGGCCGTGGGCTTCATGCTGCGCCACGAGCTGGGCCTGCAGACGCGGGGTGCAGTGGGCCGCCGGCTGCCCCCCGATATGGAGGAGAACGTGCGGGCCTTCGTGGAGTTCGTGCAGAAGCAGATCCACGTGCAGGAGATCCCGCTCTCGGTCATCGGCACCATGGACGAGCTCTCCATCTTCCTGGTAGGCTGGGTGGCCGAGGCCCTGGCTGGCATCTCGGCCCAGCCCGAGCTGCTGCAGCAGTCCTTCCTGGTGGCCAGCGTGCTGCCGGGGCCCGAGGGTGTGGAGAGCGCGGCCGACACGCAGGTGGAGCTCATCCGGCTGATGGAGCAGCGCCTGCAGGGGCCTGCGGTGCCGGCGGAGGAGGAAGGTGAGGCCAAGGAGGGCAAAGAGCATAAGGAGGCCAAGGAGGGTGAGAAGGCCGAGGAGGGTGTGGCCCAGGAAGGCAAGGAGGGCCTGGCCAATGTGGCTGAGGAGGCCAAGGGGGGCATGGTCAAGGAAGCCAAGGAAGGTGAGGAGGCCAAGGTGGGGGTGGCCAAGACCGGCGAGGAAGTCAAAGAGGGCGAGGCGGCCAAGACAGGCAAAAAGCCACCGGCCAAAGTCTCCGCCCAGGTGTCGGAGAAGCCGAACAAGAAGGCCTCTCCGGGACTGAGCCGGGCCGCCGCGGAAGCCGGACCTCTGCACCAGCTGTTCGAGAAAGACAGCGATGCCGAATCATTCCACGGCTTCGACGACACCGAGCTGGACCCCTGA

Function

GO: NA

KEGG:

id description
K22594 POGZ; pogo transposable element with ZNF domain

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012446 True 4842 mRNA 0.66 17 18353011 18375993

Neighbor

gene id symbol gene type direction distance location
AMCG00012447 NA coding upstream 2110 18329924 ~ 18350901 (+)
AMCG00012440 anp32e,LOC100707939,LOC102193634,LOC102789185 coding upstream 115823 18229745 ~ 18237188 (+)
AMCG00012431 NA coding upstream 173194 18174010 ~ 18179817 (+)
AMCG00012432 NA coding upstream 183267 18162576 ~ 18169744 (+)
AMCG00012429 NA coding upstream 346237 18002639 ~ 18006774 (+)
AMCG00012454 selenbp1,LOC107588475,LOC107556087 coding downstream 13838 18389831 ~ 18401677 (+)
AMCG00012451 LOC101076171,LOC102795628 coding downstream 26312 18402305 ~ 18414912 (+)
AMCG00012452 pi4kb,LOC107588477,LOC107556110 coding downstream 40970 18416963 ~ 18442351 (+)
AMCG00012453 NA coding downstream 69118 18445111 ~ 18466585 (+)
AMCG00012457 NA coding downstream 100718 18476711 ~ 18491471 (+)
G136848 NA non-coding upstream 35935 18295215 ~ 18317076 (+)
G136842 NA non-coding upstream 83504 18261897 ~ 18269507 (+)
G136718 NA non-coding upstream 451355 17900908 ~ 17901656 (+)
G136571 NA non-coding upstream 688841 17663433 ~ 17664170 (+)
G136568 NA non-coding upstream 703904 17648628 ~ 17649107 (+)
G136866 NA non-coding downstream 57577 18433570 ~ 18470784 (+)
G136873 NA non-coding downstream 97240 18473233 ~ 18474916 (+)
G136969 NA non-coding downstream 239905 18615898 ~ 18653598 (+)
G137007 NA non-coding downstream 526519 18902512 ~ 18902871 (+)
G137016 NA non-coding downstream 556431 18932424 ~ 18933248 (+)
AMCG00012439 NA other upstream 218630 18130284 ~ 18134381 (+)
G136720 cct3,tcpg,LOC107597996,LOC107587818,LOC107741740,LOC107671634,LOC107704884 other upstream 449201 17902832 ~ 17903810 (+)
G136658 NA other upstream 509090 17840933 ~ 17843921 (+)
AMCG00012423 LOC102799202,LOC107564869 other upstream 557767 17792251 ~ 17795244 (+)
G136641 NA other upstream 585480 17764145 ~ 17767531 (+)
G136864 psmb4 other downstream 9296 18385289 ~ 18388306 (+)
AMCG00012460 NA other downstream 163552 18539545 ~ 18544490 (+)
AMCG00012471 NA other downstream 671504 19047497 ~ 19053829 (+)
G137083 NA other downstream 793755 19169748 ~ 19174421 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other downstream 861696 19237689 ~ 19238958 (+)

Expression


Co-expression Network